Mutagenetix > Incidental Mutation

Incidental Mutation 'R1540:Ints10'

171665

Institutional Source

Beutler Lab

Gene Symbol

Ints10

Ensembl Gene

ENSMUSG00000031864

Gene Name

integrator complex subunit 10

Synonyms

4921521J11Rik

MMRRC Submission

039579-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1540 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

69245729-69282062 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 69249365 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000105871 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034328] [ENSMUST00000070713] [ENSMUST00000110241] [ENSMUST00000110242]

AlphaFold

Q8K2A7

Predicted Effect

probably benign
Transcript: ENSMUST00000034328

SMART Domains

Protein: ENSMUSP00000034328
Gene: ENSMUSG00000031864

Domain	Start	End	E-Value	Type
low complexity region	132	138	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000070713

SMART Domains

Protein: ENSMUSP00000069908
Gene: ENSMUSG00000031864

Domain	Start	End	E-Value	Type
low complexity region	132	138	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110241

SMART Domains

Protein: ENSMUSP00000105870
Gene: ENSMUSG00000031864

Domain	Start	End	E-Value	Type
low complexity region	132	138	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110242

SMART Domains

Protein: ENSMUSP00000105871
Gene: ENSMUSG00000031864

Domain	Start	End	E-Value	Type
low complexity region	132	138	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000121595

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145140

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146322

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.4%
20x: 93.0%

Validation Efficiency

96% (72/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] INTS10 is a subunit of the Integrator complex, which associates with the C-terminal domain of RNA polymerase II large subunit (POLR2A; MIM 180660) and mediates 3-prime end processing of small nuclear RNAs U1 (RNU1; MIM 180680) and U2 (RNU2; MIM 180690) (Baillat et al., 2005 [PubMed 16239144]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agl	A	G	3: 116,574,384 (GRCm39)	C767R	probably benign	Het
Anpep	C	T	7: 79,488,004 (GRCm39)	E518K	probably benign	Het
Ap3d1	A	T	10: 80,551,775 (GRCm39)	I644N	probably benign	Het
Asb16	A	G	11: 102,163,402 (GRCm39)	I131V	probably benign	Het
Atp6v0a2	C	A	5: 124,784,638 (GRCm39)	A307D	probably damaging	Het
C1qtnf1	C	T	11: 118,338,749 (GRCm39)	H140Y	probably benign	Het
Cacna1g	T	A	11: 94,347,865 (GRCm39)	D741V	probably damaging	Het
Caprin2	T	A	6: 148,777,969 (GRCm39)	T211S	probably benign	Het
Carmil1	T	C	13: 24,283,037 (GRCm39)	E89G	possibly damaging	Het
Casz1	T	A	4: 149,027,357 (GRCm39)		probably benign	Het
Catsperb	G	A	12: 101,378,589 (GRCm39)	R30Q	probably benign	Het
Ccdc102a	A	T	8: 95,634,341 (GRCm39)		probably null	Het
Ccdc110	G	T	8: 46,395,362 (GRCm39)	E418*	probably null	Het
Ccdc90b	C	T	7: 92,231,024 (GRCm39)	A210V	probably benign	Het
Cdadc1	G	T	14: 59,823,532 (GRCm39)	A320E	probably damaging	Het
Cdadc1	T	A	14: 59,823,541 (GRCm39)	Q317L	probably damaging	Het
Cep170	C	A	1: 176,567,498 (GRCm39)	W1396L	probably damaging	Het
Col4a6	T	C	X: 140,010,854 (GRCm39)	T129A	probably damaging	Het
Ctcfl	C	T	2: 172,954,141 (GRCm39)	D319N	probably benign	Het
Dclk1	T	C	3: 55,385,244 (GRCm39)	S45P	probably damaging	Het
Efcab3	T	C	11: 104,999,726 (GRCm39)	I5581T	probably benign	Het
Evi2	T	C	11: 79,406,412 (GRCm39)	I388V	probably benign	Het
Fbxl5	A	T	5: 43,915,978 (GRCm39)	V435E	possibly damaging	Het
Fig4	A	T	10: 41,064,582 (GRCm39)	M887K	possibly damaging	Het
Glt8d1	G	A	14: 30,733,549 (GRCm39)	V345I	probably benign	Het
Gm5709	T	C	3: 59,526,073 (GRCm39)		noncoding transcript	Het
Hsp90b1	A	G	10: 86,529,906 (GRCm39)	F264L	probably damaging	Het
Id3	A	G	4: 135,871,250 (GRCm39)	S21G	possibly damaging	Het
Ighe	T	A	12: 113,235,066 (GRCm39)	N365Y	unknown	Het
Il17rd	T	G	14: 26,821,915 (GRCm39)	M403R	probably damaging	Het
Kcnc4	T	A	3: 107,352,743 (GRCm39)		probably null	Het
Kctd19	A	G	8: 106,114,511 (GRCm39)	S517P	probably damaging	Het
Lama5	A	G	2: 179,821,944 (GRCm39)	F2964L	probably benign	Het
Lin54	A	T	5: 100,628,109 (GRCm39)	N31K	probably damaging	Het
Lrrc8e	A	G	8: 4,284,990 (GRCm39)	K405R	probably benign	Het
Lyst	T	A	13: 13,809,686 (GRCm39)	M452K	possibly damaging	Het
Mroh7	A	G	4: 106,560,273 (GRCm39)	L677P	probably benign	Het
Mrps27	T	A	13: 99,541,558 (GRCm39)	F221I	probably benign	Het
Nhlrc1	C	T	13: 47,167,820 (GRCm39)	V146M	probably damaging	Het
Nlrp9b	T	A	7: 19,782,772 (GRCm39)	C895*	probably null	Het
Nod1	T	C	6: 54,920,960 (GRCm39)	T453A	probably benign	Het
Nodal	T	C	10: 61,258,764 (GRCm39)	V67A	probably damaging	Het
Ntsr1	T	C	2: 180,184,440 (GRCm39)	L381P	probably damaging	Het
Or13c25	T	C	4: 52,910,996 (GRCm39)	D266G	probably benign	Het
Or2b2b	T	A	13: 21,858,700 (GRCm39)	Q138L	probably benign	Het
Or9e1	T	A	11: 58,732,477 (GRCm39)	M179K	probably benign	Het
P2ry14	T	A	3: 59,022,686 (GRCm39)	K267M	probably benign	Het
Pcdh1	T	C	18: 38,322,779 (GRCm39)	N1018S	probably benign	Het
Pkn3	G	A	2: 29,974,703 (GRCm39)	V406I	probably damaging	Het
Prkcb	C	T	7: 122,226,916 (GRCm39)	T634I	probably damaging	Het
Psme2b	T	A	11: 48,836,209 (GRCm39)		probably null	Het
Ptgfrn	A	G	3: 100,967,970 (GRCm39)	I541T	probably benign	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Ralgapb	T	C	2: 158,307,746 (GRCm39)	V684A	probably benign	Het
Rbbp5	C	T	1: 132,422,020 (GRCm39)	R307*	probably null	Het
Rcor1	T	A	12: 111,070,037 (GRCm39)		probably benign	Het
Rlbp1	C	T	7: 79,029,808 (GRCm39)	A142T	probably damaging	Het
Rps6ka2	A	G	17: 7,560,305 (GRCm39)	E581G	probably null	Het
Sars1	A	T	3: 108,340,461 (GRCm39)	V155E	probably benign	Het
Sec31a	G	C	5: 100,523,178 (GRCm39)	P569A	probably damaging	Het
Selenof	A	T	3: 144,300,685 (GRCm39)	K111*	probably null	Het
Serpinb7	C	T	1: 107,355,998 (GRCm39)	A7V	possibly damaging	Het
Smc4	T	A	3: 68,924,105 (GRCm39)	Y298N	probably damaging	Het
Snrpa1	T	A	7: 65,720,409 (GRCm39)	I204N	probably damaging	Het
Spry4	T	G	18: 38,734,740 (GRCm39)		probably benign	Het
Tcea2	A	G	2: 181,328,751 (GRCm39)	N261S	possibly damaging	Het
Tmem59l	A	G	8: 70,937,804 (GRCm39)	F192S	probably benign	Het
Tnr	T	A	1: 159,677,675 (GRCm39)	I20N	probably damaging	Het
Ttll5	C	T	12: 85,938,982 (GRCm39)	Q427*	probably null	Het
Vps45	C	T	3: 95,955,658 (GRCm39)	A111T	probably damaging	Het
Zfp395	T	C	14: 65,630,523 (GRCm39)	S358P	probably benign	Het
Zfp438	A	G	18: 5,210,740 (GRCm39)	V766A	probably benign	Het

Other mutations in Ints10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00743:Ints10	APN	8	69,271,985 (GRCm39)	missense	probably damaging	1.00
IGL00964:Ints10	APN	8	69,264,638 (GRCm39)	missense	probably damaging	1.00
IGL02326:Ints10	APN	8	69,257,485 (GRCm39)	missense	probably damaging	0.99
R0012:Ints10	UTSW	8	69,260,127 (GRCm39)	missense	probably benign	0.01
R0112:Ints10	UTSW	8	69,279,954 (GRCm39)	missense	probably damaging	0.99
R1302:Ints10	UTSW	8	69,279,964 (GRCm39)	missense	probably damaging	1.00
R1462:Ints10	UTSW	8	69,260,296 (GRCm39)	splice site	probably benign
R1592:Ints10	UTSW	8	69,255,555 (GRCm39)	missense	possibly damaging	0.69
R1845:Ints10	UTSW	8	69,247,323 (GRCm39)	missense	probably damaging	1.00
R2144:Ints10	UTSW	8	69,249,457 (GRCm39)	missense	probably damaging	1.00
R2323:Ints10	UTSW	8	69,271,997 (GRCm39)	missense	probably benign	0.09
R3765:Ints10	UTSW	8	69,277,771 (GRCm39)	missense	possibly damaging	0.78
R3910:Ints10	UTSW	8	69,266,272 (GRCm39)	missense	probably damaging	0.96
R3912:Ints10	UTSW	8	69,266,272 (GRCm39)	missense	probably damaging	0.96
R3913:Ints10	UTSW	8	69,266,272 (GRCm39)	missense	probably damaging	0.96
R4050:Ints10	UTSW	8	69,280,003 (GRCm39)	missense	probably damaging	1.00
R4151:Ints10	UTSW	8	69,247,250 (GRCm39)	splice site	probably null
R4607:Ints10	UTSW	8	69,263,271 (GRCm39)	missense	probably damaging	1.00
R4608:Ints10	UTSW	8	69,263,271 (GRCm39)	missense	probably damaging	1.00
R4881:Ints10	UTSW	8	69,263,256 (GRCm39)	missense	probably benign	0.08
R4911:Ints10	UTSW	8	69,279,964 (GRCm39)	missense	probably damaging	0.98
R5255:Ints10	UTSW	8	69,246,624 (GRCm39)	start gained	probably benign
R5331:Ints10	UTSW	8	69,273,472 (GRCm39)	splice site	probably null
R5461:Ints10	UTSW	8	69,246,693 (GRCm39)	missense	possibly damaging	0.59
R5740:Ints10	UTSW	8	69,257,574 (GRCm39)	missense	probably damaging	0.96
R5741:Ints10	UTSW	8	69,257,574 (GRCm39)	missense	probably damaging	0.96
R6128:Ints10	UTSW	8	69,274,904 (GRCm39)	critical splice donor site	probably null
R6465:Ints10	UTSW	8	69,260,188 (GRCm39)	missense	probably benign
R6868:Ints10	UTSW	8	69,250,450 (GRCm39)	missense	probably damaging	1.00
R6983:Ints10	UTSW	8	69,246,703 (GRCm39)	missense	probably damaging	1.00
R7076:Ints10	UTSW	8	69,249,403 (GRCm39)	nonsense	probably null
R7216:Ints10	UTSW	8	69,274,809 (GRCm39)	missense	probably damaging	0.96
R7652:Ints10	UTSW	8	69,277,771 (GRCm39)	missense	possibly damaging	0.78
R8134:Ints10	UTSW	8	69,255,638 (GRCm39)	nonsense	probably null
R8176:Ints10	UTSW	8	69,255,603 (GRCm39)	missense	probably damaging	1.00
R8185:Ints10	UTSW	8	69,249,370 (GRCm39)	missense	possibly damaging	0.51
R8964:Ints10	UTSW	8	69,264,631 (GRCm39)	missense	probably benign
R9015:Ints10	UTSW	8	69,260,139 (GRCm39)	missense	probably benign	0.00
R9256:Ints10	UTSW	8	69,261,129 (GRCm39)	missense	possibly damaging	0.93
R9320:Ints10	UTSW	8	69,279,951 (GRCm39)	missense	probably damaging	0.98
R9372:Ints10	UTSW	8	69,271,967 (GRCm39)	missense	probably damaging	1.00
X0027:Ints10	UTSW	8	69,261,126 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TCCTCTAGATTGCTGTGGGTTCAGAT -3'
(R):5'- GTGGCAGACGCACTATTCCAGAAG -3'

Sequencing Primer
(F):5'- gcattcaccgccacacc -3'
(R):5'- CAATGCTGACGTGATGATGC -3'

Posted On

2014-04-13