Mutagenetix > Incidental Mutation

Incidental Mutation 'R2113:Crat'

232734

Institutional Source

Beutler Lab

Gene Symbol

Crat

Ensembl Gene

ENSMUSG00000026853

Gene Name

carnitine acetyltransferase

Synonyms

CARAT

MMRRC Submission

040117-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.215) question?

Stock #

R2113 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

30290483-30305825 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 30292654 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 606 (Y606F)

Ref Sequence

ENSEMBL: ENSMUSP00000099919 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028207] [ENSMUST00000028209] [ENSMUST00000102854] [ENSMUST00000102855] [ENSMUST00000113612] [ENSMUST00000123202] [ENSMUST00000154595]

AlphaFold

P47934

Predicted Effect

probably benign
Transcript: ENSMUST00000028207
AA Change: Y606F

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000028207
Gene: ENSMUSG00000026853
AA Change: Y606F

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	34	616	1.9e-235	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000028209

SMART Domains

Protein: ENSMUSP00000028209
Gene: ENSMUSG00000026856

Domain	Start	End	E-Value	Type
acidPPc	59	180	1.31e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102854
AA Change: Y585F

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000099918
Gene: ENSMUSG00000026853
AA Change: Y585F

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	13	595	1.8e-235	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000102855
AA Change: Y606F

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000099919
Gene: ENSMUSG00000026853
AA Change: Y606F

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	35	615	2.4e-195	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113612

SMART Domains

Protein: ENSMUSP00000109242
Gene: ENSMUSG00000026856

Domain	Start	End	E-Value	Type
Pfam:PAP2	58	165	1.7e-13	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000123202

SMART Domains

Protein: ENSMUSP00000119478
Gene: ENSMUSG00000026856

Domain	Start	End	E-Value	Type
Pfam:PAP2	1	90	8.1e-13	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133991

Predicted Effect

probably benign
Transcript: ENSMUST00000154595
AA Change: Y131F

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000114925
Gene: ENSMUSG00000026853
AA Change: Y131F

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	1	132	1.4e-45	PFAM

Predicted Effect

unknown
Transcript: ENSMUST00000155790
AA Change: Y180F

SMART Domains

Protein: ENSMUSP00000122814
Gene: ENSMUSG00000026853
AA Change: Y180F

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	1	133	2.4e-51	PFAM
Pfam:Carn_acyltransf	128	190	8.9e-16	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151018

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152303

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146603

Predicted Effect

probably benign
Transcript: ENSMUST00000137248

SMART Domains

Protein: ENSMUSP00000116276
Gene: ENSMUSG00000026856

Domain	Start	End	E-Value	Type
transmembrane domain	31	53	N/A	INTRINSIC
low complexity region	71	90	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000155196

SMART Domains

Protein: ENSMUSP00000115602
Gene: ENSMUSG00000026856

Domain	Start	End	E-Value	Type
transmembrane domain	29	51	N/A	INTRINSIC
low complexity region	69	88	N/A	INTRINSIC

Coding Region Coverage

1x: 99.1%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes carnitine O-acetyltransferase, a member of the carnitine acyltransferase family and a key metabolic pathway enzyme which plays an important role in energy homeostasis and fat metabolism. This enzyme catalyzes the reversible transfer of acyl groups from an acyl-CoA thioester to carnitine and regulates the ratio of acyl-CoA/CoA. It is found in both the mitochondria and the peroxisome. Alternative splicing results in transcript variants encoding different isoforms that may localize to different subcellular compartments. [provided by RefSeq, Oct 2016]
PHENOTYPE: Mice with muscle specific loss of function display increased circulating glucose level, impaired glucose tolerance, insulin resistance, decreased circulating triglyceride and free fatty acid levels, increased susceptibility to diet-induced obesity and abnormal mitochondrial physiology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 127 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd4	C	A	12: 84,655,790 (GRCm39)	G295*	probably null	Het
Acad9	T	C	3: 36,128,525 (GRCm39)	Y129H	probably damaging	Het
Actn4	C	T	7: 28,597,549 (GRCm39)	G608D	probably benign	Het
Adcyap1r1	T	A	6: 55,458,100 (GRCm39)	N300K	probably damaging	Het
Adh5	A	G	3: 138,157,245 (GRCm39)	I269V	probably benign	Het
Afap1l2	G	A	19: 56,901,821 (GRCm39)	A842V	possibly damaging	Het
AI429214	A	T	8: 37,461,154 (GRCm39)	K101*	probably null	Het
Alg10b	T	A	15: 90,109,860 (GRCm39)	W58R	probably damaging	Het
Alpk2	C	T	18: 65,438,754 (GRCm39)	E1347K	probably benign	Het
Amotl2	G	T	9: 102,601,922 (GRCm39)	E389*	probably null	Het
Ap5m1	G	A	14: 49,323,705 (GRCm39)	R465Q	probably damaging	Het
Apoa1	A	C	9: 46,140,512 (GRCm39)	S48R	probably damaging	Het
Asb1	T	C	1: 91,471,950 (GRCm39)	L34P	probably damaging	Het
Atg14	C	T	14: 47,788,781 (GRCm39)	A191T	probably damaging	Het
Atp13a4	C	T	16: 29,260,102 (GRCm39)	V235I	possibly damaging	Het
Atrnl1	C	T	19: 57,744,048 (GRCm39)	Q1217*	probably null	Het
Bltp2	T	C	11: 78,159,598 (GRCm39)	V549A	probably benign	Het
Bsn	A	T	9: 107,992,085 (GRCm39)	H1222Q	probably benign	Het
Catsper4	A	T	4: 133,945,552 (GRCm39)	V169E	probably damaging	Het
Cbx4	C	T	11: 118,972,718 (GRCm39)	G219E	probably damaging	Het
Ccdc136	C	T	6: 29,413,031 (GRCm39)	T406I	possibly damaging	Het
Celsr3	A	T	9: 108,715,669 (GRCm39)	Y2117F	probably damaging	Het
Cenpf	T	A	1: 189,411,299 (GRCm39)	Q295L	probably damaging	Het
Ces1b	A	G	8: 93,794,783 (GRCm39)	V272A	probably benign	Het
Cgn	A	T	3: 94,687,116 (GRCm39)	V62D	probably damaging	Het
Ckap4	T	G	10: 84,369,387 (GRCm39)	Q115P	possibly damaging	Het
Clec10a	T	C	11: 70,060,650 (GRCm39)		probably null	Het
Clmn	A	T	12: 104,747,067 (GRCm39)	S827T	probably benign	Het
Cntn4	T	C	6: 106,466,658 (GRCm39)	S187P	probably damaging	Het
Cntnap5a	A	T	1: 116,116,095 (GRCm39)	I526F	probably damaging	Het
Cntnap5b	A	G	1: 100,202,140 (GRCm39)	Q329R	probably benign	Het
Col1a1	T	A	11: 94,839,188 (GRCm39)	S979T	unknown	Het
Cyp2c29	G	T	19: 39,318,708 (GRCm39)	C396F	probably damaging	Het
Cyp2d34	G	T	15: 82,501,817 (GRCm39)	P231Q	probably damaging	Het
Ddi2	A	T	4: 141,430,591 (GRCm39)		probably null	Het
Dicer1	A	T	12: 104,679,473 (GRCm39)	H501Q	probably damaging	Het
Dnah12	A	G	14: 26,488,098 (GRCm39)	I1001V	probably damaging	Het
Dnase2a	T	A	8: 85,637,500 (GRCm39)	C301S	probably damaging	Het
Dock10	T	A	1: 80,584,280 (GRCm39)	D142V	probably damaging	Het
Dpp8	G	A	9: 64,971,150 (GRCm39)	C590Y	probably benign	Het
Dst	T	A	1: 34,314,317 (GRCm39)	M6707K	probably damaging	Het
Duox1	T	C	2: 122,167,735 (GRCm39)	V1006A	probably benign	Het
Dync1h1	T	C	12: 110,596,420 (GRCm39)	S1623P	probably damaging	Het
Ehmt1	A	T	2: 24,694,015 (GRCm39)	D1011E	probably damaging	Het
Epc2	T	A	2: 49,422,235 (GRCm39)	D376E	probably benign	Het
Eps8	C	A	6: 137,514,633 (GRCm39)		probably null	Het
F11	T	C	8: 45,699,869 (GRCm39)	T406A	probably benign	Het
Fat3	T	G	9: 15,911,082 (GRCm39)	D1640A	probably damaging	Het
Fbxo15	A	T	18: 84,977,230 (GRCm39)	R47S	probably benign	Het
Fbxo28	A	T	1: 182,157,490 (GRCm39)	V109E	probably damaging	Het
Fn1	A	T	1: 71,665,323 (GRCm39)	S931R	probably damaging	Het
Fndc3b	T	C	3: 27,697,185 (GRCm39)	D9G	probably damaging	Het
Frem2	G	A	3: 53,560,343 (GRCm39)	T1388I	probably damaging	Het
Fstl3	C	A	10: 79,617,012 (GRCm39)	T185N	probably damaging	Het
Glo1	A	T	17: 30,823,014 (GRCm39)	Y49*	probably null	Het
Gtsf2	T	C	15: 103,348,100 (GRCm39)	M137V	probably benign	Het
Gzmk	C	T	13: 113,310,489 (GRCm39)	G110S	probably benign	Het
Hdac9	G	T	12: 34,439,331 (GRCm39)	S428R	probably damaging	Het
Hnrnpul1	G	A	7: 25,432,694 (GRCm39)	T456I	possibly damaging	Het
Ino80	T	A	2: 119,284,565 (GRCm39)	H172L	probably damaging	Het
Itgb8	A	C	12: 119,154,347 (GRCm39)	L230R	probably damaging	Het
Klf9	C	T	19: 23,142,052 (GRCm39)	R171W	probably damaging	Het
Kmt2b	G	T	7: 30,282,812 (GRCm39)	P1050Q	probably damaging	Het
Krt15	A	T	11: 100,026,484 (GRCm39)	F67L	unknown	Het
Maml3	T	A	3: 51,598,077 (GRCm39)	Y223F	probably damaging	Het
Mcm9	C	T	10: 53,491,943 (GRCm39)		probably null	Het
Mettl3	A	G	14: 52,532,441 (GRCm39)	*104Q	probably null	Het
Msrb3	T	A	10: 120,687,985 (GRCm39)	D30V	possibly damaging	Het
Mycbp2	T	C	14: 103,457,512 (GRCm39)	T1562A	probably damaging	Het
Nat14	T	C	7: 4,927,038 (GRCm39)	V70A	possibly damaging	Het
Nbeal2	T	C	9: 110,454,474 (GRCm39)	T2685A	probably damaging	Het
Nek1	A	G	8: 61,469,327 (GRCm39)	D128G	probably damaging	Het
Nfam1	T	A	15: 82,899,202 (GRCm39)	K155*	probably null	Het
Noc4l	A	T	5: 110,798,425 (GRCm39)	M255K	possibly damaging	Het
Nolc1	GCA	GCAACA	19: 46,069,800 (GRCm39)		probably benign	Het
Nolc1	CAG	CAGGAG	19: 46,069,798 (GRCm39)		probably benign	Het
Nprl2	T	C	9: 107,422,511 (GRCm39)	S334P	probably benign	Het
Nsrp1	A	G	11: 76,937,396 (GRCm39)	S267P	probably benign	Het
Ntn4	A	T	10: 93,480,701 (GRCm39)	M142L	probably damaging	Het
Nup188	T	A	2: 30,194,113 (GRCm39)	C139*	probably null	Het
Nup210l	A	T	3: 90,098,281 (GRCm39)	N1411I	possibly damaging	Het
Or10g1	A	G	14: 52,647,753 (GRCm39)	L192P	probably damaging	Het
Or5ak24	T	G	2: 85,260,430 (GRCm39)	T248P	probably damaging	Het
Pard3	A	T	8: 128,115,018 (GRCm39)	T579S	probably damaging	Het
Pcnx3	G	T	19: 5,721,584 (GRCm39)	D1071E	possibly damaging	Het
Pi4k2a	T	A	19: 42,103,510 (GRCm39)	I340N	possibly damaging	Het
Pkdrej	T	A	15: 85,703,185 (GRCm39)	D917V	probably damaging	Het
Plekhg4	T	A	8: 106,106,066 (GRCm39)	F821Y	probably damaging	Het
Ptgfrn	C	T	3: 100,984,625 (GRCm39)	R189H	probably benign	Het
Ptpn18	T	A	1: 34,510,742 (GRCm39)	S235R	probably damaging	Het
Rabep2	A	G	7: 126,044,460 (GRCm39)		probably null	Het
Rbp3	T	G	14: 33,678,014 (GRCm39)	I654S	probably benign	Het
Rimbp3	T	C	16: 17,027,539 (GRCm39)	L321P	probably benign	Het
Rims2	T	A	15: 39,374,722 (GRCm39)	M1028K	probably benign	Het
Ruvbl1	T	A	6: 88,460,003 (GRCm39)	V221D	probably damaging	Het
Ruvbl2	A	T	7: 45,073,527 (GRCm39)		probably null	Het
Scn7a	C	T	2: 66,506,312 (GRCm39)	D1526N	probably damaging	Het
Scnn1a	T	C	6: 125,314,774 (GRCm39)	F218S	possibly damaging	Het
Sh3tc2	T	A	18: 62,146,176 (GRCm39)	M1185K	probably damaging	Het
Slain1	C	A	14: 103,888,282 (GRCm39)	D67E	possibly damaging	Het
Snx33	T	C	9: 56,833,724 (GRCm39)	D115G	probably benign	Het
Sowaha	G	A	11: 53,369,789 (GRCm39)	R316C	probably damaging	Het
Spata17	A	T	1: 186,830,108 (GRCm39)	F309I	possibly damaging	Het
Spmip7	G	A	11: 11,440,293 (GRCm39)		probably null	Het
Ssrp1	G	T	2: 84,873,350 (GRCm39)		probably null	Het
St6gal1	C	G	16: 23,147,167 (GRCm39)	T225S	probably damaging	Het
Sulf1	C	G	1: 12,918,398 (GRCm39)	F38L	probably damaging	Het
Tbc1d7	G	A	13: 43,306,562 (GRCm39)	T138M	probably damaging	Het
Tdpoz4	T	A	3: 93,704,351 (GRCm39)	M216K	probably damaging	Het
Tmem200a	A	G	10: 25,869,220 (GRCm39)	S350P	probably damaging	Het
Tnpo3	A	T	6: 29,551,871 (GRCm39)	D903E	probably benign	Het
Trpc4ap	A	T	2: 155,499,856 (GRCm39)	I222N	probably damaging	Het
Trrap	T	A	5: 144,781,021 (GRCm39)	Y3261N	probably damaging	Het
Ttn	A	G	2: 76,542,954 (GRCm39)	V33344A	possibly damaging	Het
Uchl4	A	T	9: 64,142,818 (GRCm39)	T100S	probably damaging	Het
Uxs1	A	G	1: 43,810,933 (GRCm39)	Y97H	probably damaging	Het
Vmn1r192	A	T	13: 22,371,800 (GRCm39)	V140D	possibly damaging	Het
Vmn2r114	ATTT	ATT	17: 23,509,906 (GRCm39)		probably null	Het
Vmn2r7	A	G	3: 64,599,025 (GRCm39)	S511P	possibly damaging	Het
Vmn2r88	T	C	14: 51,655,651 (GRCm39)	L621P	probably damaging	Het
Vps45	A	T	3: 95,954,365 (GRCm39)	M174K	probably benign	Het
Wdr72	A	T	9: 74,052,454 (GRCm39)	M162L	probably benign	Het
Wdr81	T	A	11: 75,344,461 (GRCm39)	M269L	probably benign	Het
Zfp53	A	G	17: 21,728,713 (GRCm39)	T249A	probably benign	Het
Zfp758	T	C	17: 22,580,626 (GRCm39)	S22P	probably benign	Het
Zfp780b	T	C	7: 27,663,298 (GRCm39)	D419G	possibly damaging	Het
Zfp934	A	T	13: 62,666,507 (GRCm39)	Y45N	probably damaging	Het

Other mutations in Crat

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01294:Crat	APN	2	30,295,199 (GRCm39)	missense	probably damaging	0.99
IGL01357:Crat	APN	2	30,297,736 (GRCm39)	missense	probably damaging	1.00
IGL01538:Crat	APN	2	30,299,978 (GRCm39)	missense	probably damaging	1.00
IGL01973:Crat	APN	2	30,295,493 (GRCm39)	missense	probably damaging	0.98
IGL02228:Crat	APN	2	30,303,194 (GRCm39)	missense	probably damaging	1.00
IGL02408:Crat	APN	2	30,297,146 (GRCm39)	missense	probably damaging	1.00
IGL02569:Crat	APN	2	30,294,542 (GRCm39)	missense	probably damaging	0.99
IGL02637:Crat	APN	2	30,296,401 (GRCm39)	missense	probably benign	0.06
IGL02983:Crat	APN	2	30,294,538 (GRCm39)	critical splice donor site	probably null
IGL03395:Crat	APN	2	30,294,978 (GRCm39)	missense	probably benign	0.11
Charlie	UTSW	2	30,293,553 (GRCm39)	missense	probably damaging	1.00
demo	UTSW	2	30,292,703 (GRCm39)	missense	probably damaging	1.00
veruca	UTSW	2	30,293,640 (GRCm39)	unclassified	probably benign
R0136:Crat	UTSW	2	30,297,042 (GRCm39)	missense	probably benign
R0389:Crat	UTSW	2	30,293,640 (GRCm39)	unclassified	probably benign
R0443:Crat	UTSW	2	30,293,640 (GRCm39)	unclassified	probably benign
R0619:Crat	UTSW	2	30,299,996 (GRCm39)	missense	probably benign	0.14
R1938:Crat	UTSW	2	30,303,073 (GRCm39)	missense	probably benign
R1990:Crat	UTSW	2	30,295,060 (GRCm39)	missense	possibly damaging	0.93
R2655:Crat	UTSW	2	30,292,703 (GRCm39)	missense	probably damaging	1.00
R3150:Crat	UTSW	2	30,303,871 (GRCm39)	critical splice donor site	probably null
R4231:Crat	UTSW	2	30,303,023 (GRCm39)	missense	possibly damaging	0.95
R4553:Crat	UTSW	2	30,298,229 (GRCm39)	missense	probably benign	0.00
R4592:Crat	UTSW	2	30,305,378 (GRCm39)	utr 5 prime	probably benign
R4718:Crat	UTSW	2	30,298,176 (GRCm39)	nonsense	probably null
R4808:Crat	UTSW	2	30,300,033 (GRCm39)	missense	probably benign	0.01
R4982:Crat	UTSW	2	30,297,148 (GRCm39)	critical splice acceptor site	probably null
R5473:Crat	UTSW	2	30,297,726 (GRCm39)	missense	probably damaging	1.00
R6049:Crat	UTSW	2	30,293,553 (GRCm39)	missense	probably damaging	1.00
R6223:Crat	UTSW	2	30,297,042 (GRCm39)	missense	probably benign	0.07
R6774:Crat	UTSW	2	30,303,195 (GRCm39)	missense	probably damaging	1.00
R6885:Crat	UTSW	2	30,305,208 (GRCm39)	splice site	probably benign
R7376:Crat	UTSW	2	30,296,477 (GRCm39)	missense	probably damaging	1.00
R7407:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7408:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7410:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7467:Crat	UTSW	2	30,299,994 (GRCm39)	missense	probably damaging	1.00
R7484:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7514:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7582:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7584:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7585:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7620:Crat	UTSW	2	30,298,090 (GRCm39)	missense	probably damaging	0.99
R7685:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R7686:Crat	UTSW	2	30,294,577 (GRCm39)	missense	probably benign	0.01
R8332:Crat	UTSW	2	30,295,084 (GRCm39)	missense	possibly damaging	0.71
R8554:Crat	UTSW	2	30,300,035 (GRCm39)	missense	probably benign	0.36
R8766:Crat	UTSW	2	30,297,075 (GRCm39)	missense	probably benign	0.38
R8994:Crat	UTSW	2	30,297,887 (GRCm39)	missense	probably damaging	1.00
R9151:Crat	UTSW	2	30,295,052 (GRCm39)	missense	probably damaging	1.00
R9176:Crat	UTSW	2	30,297,892 (GRCm39)	missense	probably damaging	1.00
R9182:Crat	UTSW	2	30,298,085 (GRCm39)	missense	probably damaging	0.99
R9293:Crat	UTSW	2	30,298,214 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TTTCTGGCTCAAACTGGAGG -3'
(R):5'- GCTCATCCTGGGAAGGAAAG -3'

Sequencing Primer
(F):5'- CTCAAACTGGAGGGCACG -3'
(R):5'- GTGTGAAAGCTTAGCTCCTGC -3'

Posted On

2014-09-18