Mutagenetix > Incidental Mutation

Incidental Mutation 'R4996:Micall2'

385241

Institutional Source

Beutler Lab

Gene Symbol

Micall2

Ensembl Gene

ENSMUSG00000036718

Gene Name

MICAL-like 2

Synonyms

MICAL-L2, Jrab, A930021H16Rik

MMRRC Submission

042590-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.352) question?

Stock #

R4996 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

139692451-139722091 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 139696344 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 729 (S729P)

Ref Sequence

ENSEMBL: ENSMUSP00000127937 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044642] [ENSMUST00000170773]

AlphaFold

Q3TN34

Predicted Effect

unknown
Transcript: ENSMUST00000044642
AA Change: S812P

SMART Domains

Protein: ENSMUSP00000039707
Gene: ENSMUSG00000036718
AA Change: S812P

Domain	Start	End	E-Value	Type
CH	3	102	4.34e-20	SMART
LIM	187	241	1.62e-5	SMART
low complexity region	242	253	N/A	INTRINSIC
low complexity region	326	344	N/A	INTRINSIC
low complexity region	428	489	N/A	INTRINSIC
low complexity region	502	518	N/A	INTRINSIC
low complexity region	728	746	N/A	INTRINSIC
low complexity region	755	770	N/A	INTRINSIC
DUF3585	840	980	3.1e-63	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000164584

Predicted Effect

probably benign
Transcript: ENSMUST00000165645

Predicted Effect

probably benign
Transcript: ENSMUST00000170773
AA Change: S729P

PolyPhen 2 Score 0.312 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000127937
Gene: ENSMUSG00000036718
AA Change: S729P

Domain	Start	End	E-Value	Type
SCOP:d1bkra_	1	25	9e-5	SMART
Blast:DUF3585	1	45	2e-7	BLAST
LIM	104	158	1.62e-5	SMART
low complexity region	159	170	N/A	INTRINSIC
low complexity region	243	261	N/A	INTRINSIC
low complexity region	345	406	N/A	INTRINSIC
low complexity region	419	435	N/A	INTRINSIC
low complexity region	645	663	N/A	INTRINSIC
low complexity region	672	687	N/A	INTRINSIC
DUF3585	757	897	3.1e-63	SMART

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
Actl11	A	G	9: 107,808,934 (GRCm39)	I1086V	possibly damaging	Het
Adgrv1	T	C	13: 81,726,853 (GRCm39)	S500G	probably benign	Het
Ahcyl1	A	T	3: 107,575,603 (GRCm39)	V394E	probably damaging	Het
Alg9	T	C	9: 50,720,005 (GRCm39)	F494L	probably damaging	Het
Ankrd55	C	A	13: 112,492,622 (GRCm39)	D264E	possibly damaging	Het
Asb14	A	G	14: 26,634,073 (GRCm39)	N426S	possibly damaging	Het
Atm	A	T	9: 53,435,807 (GRCm39)	F168I	probably benign	Het
Atp13a4	A	T	16: 29,290,822 (GRCm39)	I209N	probably damaging	Het
BB014433	A	T	8: 15,092,166 (GRCm39)	L229Q	probably benign	Het
Calml3	T	C	13: 3,854,142 (GRCm39)	D21G	probably damaging	Het
Capn10	A	G	1: 92,872,858 (GRCm39)	N528S	probably damaging	Het
Ccnl2	T	A	4: 155,897,981 (GRCm39)	D141E	possibly damaging	Het
Cd163	A	G	6: 124,296,106 (GRCm39)	I817V	probably benign	Het
Cgnl1	CTTGCCCAGGTT	CTT	9: 71,632,108 (GRCm39)		probably benign	Het
Cln6	T	A	9: 62,757,937 (GRCm39)	I232N	probably damaging	Het
Col22a1	A	C	15: 71,879,010 (GRCm39)	V49G	probably damaging	Het
Csmd1	A	T	8: 15,960,452 (GRCm39)	M3321K	probably damaging	Het
Cyp2u1	T	A	3: 131,091,933 (GRCm39)	M196L	probably benign	Het
Dlec1	T	G	9: 118,975,118 (GRCm39)	L1566R	probably damaging	Het
Dnajc3	A	G	14: 119,209,839 (GRCm39)	T305A	probably benign	Het
Drp2	G	A	X: 133,342,065 (GRCm39)	R567H	probably damaging	Homo
Efhd1	G	T	1: 87,192,280 (GRCm39)	G37W	possibly damaging	Het
Exph5	G	C	9: 53,286,910 (GRCm39)	E1330D	possibly damaging	Het
Fbln2	A	T	6: 91,242,992 (GRCm39)	Y913F	probably benign	Het
Fmnl1	G	A	11: 103,073,482 (GRCm39)	S167N	possibly damaging	Het
Frs3	A	G	17: 48,012,635 (GRCm39)	E114G	probably damaging	Het
Gmpr2	T	C	14: 55,914,252 (GRCm39)	I169T	probably damaging	Het
Gria2	A	G	3: 80,614,448 (GRCm39)	S531P	probably damaging	Het
Hace1	G	A	10: 45,526,046 (GRCm39)	A296T	probably benign	Het
Ift70a1	C	T	2: 75,810,266 (GRCm39)	G606S	probably benign	Het
Inhbb	A	C	1: 119,348,548 (GRCm39)	L90R	probably damaging	Het
Insr	C	T	8: 3,242,665 (GRCm39)	R18Q	probably null	Het
Kdm6b	G	T	11: 69,296,557 (GRCm39)	P570Q	probably damaging	Het
Lama3	T	C	18: 12,651,800 (GRCm39)	V1803A	probably benign	Het
Lpin3	T	A	2: 160,747,207 (GRCm39)	L811Q	probably damaging	Het
Lrrc8e	C	T	8: 4,285,166 (GRCm39)	L464F	probably damaging	Het
Naca	C	T	10: 127,878,298 (GRCm39)		probably benign	Het
Nav1	A	T	1: 135,393,709 (GRCm39)	S1010T	probably damaging	Het
Nefm	T	C	14: 68,358,570 (GRCm39)		probably benign	Het
Nlrp9c	A	T	7: 26,085,172 (GRCm39)	F136I	possibly damaging	Het
Nup210	A	T	6: 91,030,418 (GRCm39)	F137Y	probably benign	Het
Or1o3	A	G	17: 37,573,758 (GRCm39)	S266P	probably benign	Het
Or3a1c	A	G	11: 74,046,157 (GRCm39)	H59R	probably damaging	Het
Or8k32	T	C	2: 86,368,615 (GRCm39)	I215V	probably benign	Het
Otog	C	A	7: 45,948,030 (GRCm39)	H2344N	possibly damaging	Het
Otog	C	A	7: 45,954,934 (GRCm39)	C517*	probably null	Het
Pcdhac1	C	T	18: 37,225,580 (GRCm39)	Q798*	probably null	Het
Pdhx	T	C	2: 102,860,657 (GRCm39)	D330G	probably damaging	Het
Peg10	ACATCAGGATCC	ACATCAGGATCCCCATCAGGATCC	6: 4,756,454 (GRCm39)		probably benign	Het
Pgr	C	A	9: 8,900,914 (GRCm39)	P149Q	probably damaging	Het
Plaat1	G	A	16: 29,036,456 (GRCm39)	W31*	probably null	Het
Ppm1h	A	T	10: 122,777,245 (GRCm39)	I504F	probably damaging	Het
Ppp6r3	A	G	19: 3,523,833 (GRCm39)	S556P	probably damaging	Het
Ranbp9	G	A	13: 43,578,570 (GRCm39)	Q168*	probably null	Het
Relb	A	T	7: 19,349,528 (GRCm39)	L259Q	probably benign	Het
Rfx5	G	A	3: 94,863,126 (GRCm39)	V73I	probably benign	Het
Rgcc	T	C	14: 79,527,716 (GRCm39)	D125G	possibly damaging	Het
Rmnd5b	A	G	11: 51,518,735 (GRCm39)	V86A	probably damaging	Het
Slc15a5	G	A	6: 138,020,583 (GRCm39)	T250M	probably damaging	Het
Slc7a2	A	T	8: 41,365,599 (GRCm39)	K477*	probably null	Het
Slx9	A	T	10: 77,351,367 (GRCm39)	W14R	probably null	Het
Smc2	T	A	4: 52,461,042 (GRCm39)		probably null	Het
Sox5	A	T	6: 143,974,070 (GRCm39)	L226*	probably null	Het
Sp140l2	G	T	1: 85,224,815 (GRCm39)	A240E	probably benign	Het
Syne2	A	G	12: 75,990,724 (GRCm39)	E1903G	possibly damaging	Het
Tenm3	A	T	8: 48,688,861 (GRCm39)	I2226N	probably damaging	Het
Tmtc3	A	T	10: 100,283,086 (GRCm39)	I823N	probably damaging	Het
Top6bl	T	A	19: 4,676,112 (GRCm39)	K673N	probably benign	Het
Tor3a	T	C	1: 156,483,342 (GRCm39)	Y360C	probably damaging	Het
Trpc3	T	C	3: 36,716,967 (GRCm39)	E357G	probably benign	Het
Tubgcp6	A	T	15: 88,987,693 (GRCm39)	N1093K	possibly damaging	Het
Vmn1r64	T	A	7: 5,887,052 (GRCm39)	T164S	probably benign	Het
Vmn2r40	T	A	7: 8,911,166 (GRCm39)	Q709L	probably damaging	Het
Vmn2r81	A	T	10: 79,129,247 (GRCm39)	I713L	probably benign	Het
Washc5	T	C	15: 59,205,484 (GRCm39)	T686A	probably benign	Het
Wipf1	GCCTCCTCCTCCTCCTCCTCCTCC	GCCTCCTCCTCCTCCTCCTCC	2: 73,270,418 (GRCm39)		probably benign	Het

Other mutations in Micall2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00231:Micall2	APN	5	139,703,311 (GRCm39)	critical splice acceptor site	probably null
IGL00496:Micall2	APN	5	139,702,083 (GRCm39)	missense	probably benign	0.01
IGL02641:Micall2	APN	5	139,705,094 (GRCm39)	missense	probably damaging	1.00
IGL03245:Micall2	APN	5	139,705,014 (GRCm39)	missense	probably damaging	1.00
IGL03252:Micall2	APN	5	139,702,481 (GRCm39)	missense	probably benign	0.01
R1214:Micall2	UTSW	5	139,697,396 (GRCm39)	missense	probably damaging	0.97
R1468:Micall2	UTSW	5	139,705,097 (GRCm39)	missense	probably damaging	1.00
R1468:Micall2	UTSW	5	139,705,097 (GRCm39)	missense	probably damaging	1.00
R1831:Micall2	UTSW	5	139,702,508 (GRCm39)	missense	probably benign	0.09
R1833:Micall2	UTSW	5	139,702,508 (GRCm39)	missense	probably benign	0.09
R1969:Micall2	UTSW	5	139,721,885 (GRCm39)	missense	probably damaging	1.00
R2023:Micall2	UTSW	5	139,703,266 (GRCm39)	missense	possibly damaging	0.51
R2060:Micall2	UTSW	5	139,697,317 (GRCm39)	missense	probably damaging	0.98
R2330:Micall2	UTSW	5	139,703,270 (GRCm39)	missense	probably damaging	1.00
R3820:Micall2	UTSW	5	139,701,611 (GRCm39)	missense	possibly damaging	0.92
R4299:Micall2	UTSW	5	139,695,226 (GRCm39)	intron	probably benign
R4334:Micall2	UTSW	5	139,699,105 (GRCm39)	missense	probably damaging	1.00
R4451:Micall2	UTSW	5	139,692,852 (GRCm39)	missense	probably damaging	1.00
R4769:Micall2	UTSW	5	139,692,641 (GRCm39)	missense	probably damaging	0.97
R4911:Micall2	UTSW	5	139,702,580 (GRCm39)	missense	probably damaging	1.00
R5118:Micall2	UTSW	5	139,702,202 (GRCm39)	missense	probably damaging	1.00
R5155:Micall2	UTSW	5	139,695,986 (GRCm39)	missense	probably damaging	1.00
R5475:Micall2	UTSW	5	139,702,224 (GRCm39)	missense	probably damaging	1.00
R5750:Micall2	UTSW	5	139,701,456 (GRCm39)	splice site	probably null
R5998:Micall2	UTSW	5	139,692,666 (GRCm39)	critical splice acceptor site	probably null
R6181:Micall2	UTSW	5	139,702,506 (GRCm39)	missense	probably benign	0.41
R6852:Micall2	UTSW	5	139,701,548 (GRCm39)	missense	possibly damaging	0.90
R7046:Micall2	UTSW	5	139,694,699 (GRCm39)	unclassified	probably benign
R7395:Micall2	UTSW	5	139,702,124 (GRCm39)	missense	possibly damaging	0.78
R8514:Micall2	UTSW	5	139,701,977 (GRCm39)	missense	probably damaging	1.00
R8889:Micall2	UTSW	5	139,703,254 (GRCm39)	missense	probably damaging	0.98
R8892:Micall2	UTSW	5	139,703,254 (GRCm39)	missense	probably damaging	0.98
R8960:Micall2	UTSW	5	139,702,025 (GRCm39)	missense	probably benign	0.23
R9060:Micall2	UTSW	5	139,705,035 (GRCm39)	missense	probably damaging	1.00
R9209:Micall2	UTSW	5	139,696,170 (GRCm39)	missense	unknown
R9227:Micall2	UTSW	5	139,701,827 (GRCm39)	missense	unknown
R9230:Micall2	UTSW	5	139,701,827 (GRCm39)	missense	unknown
R9260:Micall2	UTSW	5	139,695,453 (GRCm39)	missense	unknown
R9452:Micall2	UTSW	5	139,703,311 (GRCm39)	critical splice acceptor site	probably null
Z1088:Micall2	UTSW	5	139,702,050 (GRCm39)	missense	probably benign	0.12
Z1088:Micall2	UTSW	5	139,692,649 (GRCm39)	missense	probably damaging	1.00
Z1177:Micall2	UTSW	5	139,696,057 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- ACTGGGGAAGTGACAGCTTC -3'
(R):5'- CTCTGGCTACACTCAGTGTC -3'

Sequencing Primer
(F):5'- CTTCACCAGGTGGAGCAAG -3'
(R):5'- TACACTCAGTGTCAGGGCTCTG -3'

Posted On

2016-05-10