Incidental Mutation 'R0443:Cux2'
| ID |
39271 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cux2
|
| Ensembl Gene |
ENSMUSG00000042589 |
| Gene Name |
cut-like homeobox 2 |
| Synonyms |
1700051K22Rik, ENSMUSG00000072641, Cutl2, Cux2, Cux-2 |
| MMRRC Submission |
038644-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.383)
|
| Stock # |
R0443 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
(trace)
|
| Chromosome |
5 |
| Chromosomal Location |
121996025-122188522 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 122025500 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Histidine
at position 56
(R56H)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000130302
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000086317]
[ENSMUST00000111752]
[ENSMUST00000134326]
[ENSMUST00000154139]
[ENSMUST00000168288]
|
| AlphaFold |
P70298 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000086317
AA Change: R56H
PolyPhen 2
Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000083497
Gene: ENSMUSG00000042589
AA Change: R56H
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
133 |
214 |
N/A |
INTRINSIC |
|
coiled coil region
|
235 |
311 |
N/A |
INTRINSIC |
|
low complexity region
|
373 |
394 |
N/A |
INTRINSIC |
|
low complexity region
|
397 |
408 |
N/A |
INTRINSIC |
|
low complexity region
|
459 |
474 |
N/A |
INTRINSIC |
|
CUT
|
484 |
569 |
7.62e-34 |
SMART |
|
coiled coil region
|
626 |
655 |
N/A |
INTRINSIC |
|
low complexity region
|
688 |
696 |
N/A |
INTRINSIC |
|
low complexity region
|
740 |
757 |
N/A |
INTRINSIC |
|
CUT
|
829 |
917 |
6.52e-42 |
SMART |
|
low complexity region
|
965 |
976 |
N/A |
INTRINSIC |
|
CUT
|
984 |
1070 |
1.12e-40 |
SMART |
|
HOX
|
1113 |
1175 |
7.54e-13 |
SMART |
|
low complexity region
|
1318 |
1332 |
N/A |
INTRINSIC |
|
low complexity region
|
1351 |
1370 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000111752
AA Change: R56H
PolyPhen 2
Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000107381
Gene: ENSMUSG00000042589
AA Change: R56H
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
133 |
214 |
N/A |
INTRINSIC |
|
coiled coil region
|
235 |
311 |
N/A |
INTRINSIC |
|
low complexity region
|
373 |
394 |
N/A |
INTRINSIC |
|
low complexity region
|
397 |
408 |
N/A |
INTRINSIC |
|
low complexity region
|
459 |
474 |
N/A |
INTRINSIC |
|
CUT
|
484 |
569 |
7.62e-34 |
SMART |
|
coiled coil region
|
626 |
655 |
N/A |
INTRINSIC |
|
low complexity region
|
688 |
696 |
N/A |
INTRINSIC |
|
low complexity region
|
740 |
757 |
N/A |
INTRINSIC |
|
CUT
|
829 |
917 |
6.52e-42 |
SMART |
|
low complexity region
|
965 |
976 |
N/A |
INTRINSIC |
|
CUT
|
984 |
1070 |
1.12e-40 |
SMART |
|
HOX
|
1113 |
1175 |
7.54e-13 |
SMART |
|
low complexity region
|
1318 |
1332 |
N/A |
INTRINSIC |
|
low complexity region
|
1351 |
1370 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133760
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000134326
AA Change: R56H
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144069
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000154139
AA Change: R56H
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000114948
Gene: ENSMUSG00000042589
AA Change: R56H
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
1 |
27 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000168288
AA Change: R56H
PolyPhen 2
Score 0.659 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000130302
Gene: ENSMUSG00000042589
AA Change: R56H
| Domain | Start | End | E-Value | Type |
|---|
|
coiled coil region
|
133 |
214 |
N/A |
INTRINSIC |
|
coiled coil region
|
235 |
311 |
N/A |
INTRINSIC |
|
low complexity region
|
373 |
394 |
N/A |
INTRINSIC |
|
low complexity region
|
397 |
408 |
N/A |
INTRINSIC |
|
low complexity region
|
459 |
474 |
N/A |
INTRINSIC |
|
CUT
|
484 |
569 |
7.62e-34 |
SMART |
|
coiled coil region
|
626 |
655 |
N/A |
INTRINSIC |
|
low complexity region
|
688 |
696 |
N/A |
INTRINSIC |
|
low complexity region
|
740 |
757 |
N/A |
INTRINSIC |
|
CUT
|
829 |
917 |
6.52e-42 |
SMART |
|
low complexity region
|
965 |
976 |
N/A |
INTRINSIC |
|
CUT
|
984 |
1070 |
1.12e-40 |
SMART |
|
HOX
|
1113 |
1175 |
7.54e-13 |
SMART |
|
low complexity region
|
1318 |
1332 |
N/A |
INTRINSIC |
|
low complexity region
|
1351 |
1370 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.1795 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.8%
- 10x: 97.3%
- 20x: 95.6%
|
| Validation Efficiency |
96% (52/54) |
| MGI Phenotype |
FUNCTION: This gene is a member of the Cut family of transcription factors that have multiple DNA binding domains and regulate cell proliferation and differentiation. This gene is primarily expressed in nervous tissues where it controls the proliferation of neuronal precursors, and may play a role in organogenesis earlier during embryonic development. Mice lacking the encoded protein exhibit smaller spinal cords with deficits in neural progenitor development as well as in neuroblast and interneuron differentiation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit various neural defects. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actr3b |
G |
T |
5: 26,053,409 (GRCm39) |
R246L |
probably damaging |
Het |
| Adam18 |
T |
C |
8: 25,119,653 (GRCm39) |
|
probably null |
Het |
| Ankhd1 |
A |
G |
18: 36,777,652 (GRCm39) |
S1612G |
possibly damaging |
Het |
| Caskin1 |
C |
T |
17: 24,724,374 (GRCm39) |
A1054V |
probably damaging |
Het |
| Casz1 |
T |
C |
4: 149,033,368 (GRCm39) |
V1380A |
possibly damaging |
Het |
| Ccn2 |
T |
C |
10: 24,471,701 (GRCm39) |
|
probably benign |
Het |
| Cnot6l |
T |
G |
5: 96,239,604 (GRCm39) |
|
probably benign |
Het |
| Crat |
T |
C |
2: 30,293,640 (GRCm39) |
|
probably benign |
Het |
| Dst |
A |
G |
1: 34,333,631 (GRCm39) |
|
probably null |
Het |
| Dync2h1 |
G |
T |
9: 7,167,244 (GRCm39) |
|
probably null |
Het |
| Epg5 |
T |
C |
18: 77,999,118 (GRCm39) |
|
probably benign |
Het |
| Ergic3 |
G |
A |
2: 155,858,707 (GRCm39) |
V278M |
probably benign |
Het |
| Fam20b |
A |
T |
1: 156,509,023 (GRCm39) |
D396E |
probably benign |
Het |
| Gapvd1 |
A |
G |
2: 34,594,633 (GRCm39) |
|
probably benign |
Het |
| Golga1 |
A |
T |
2: 38,908,453 (GRCm39) |
S749T |
probably damaging |
Het |
| Gsdma2 |
C |
T |
11: 98,548,514 (GRCm39) |
T255I |
probably damaging |
Het |
| Itga1 |
T |
A |
13: 115,128,996 (GRCm39) |
D554V |
probably benign |
Het |
| Itgam |
C |
T |
7: 127,680,806 (GRCm39) |
A245V |
probably damaging |
Het |
| Kcnk15 |
A |
G |
2: 163,700,243 (GRCm39) |
T161A |
probably benign |
Het |
| Map3k19 |
A |
T |
1: 127,750,152 (GRCm39) |
N1066K |
probably benign |
Het |
| Ms4a6b |
A |
G |
19: 11,499,044 (GRCm39) |
I53V |
possibly damaging |
Het |
| Mtf1 |
C |
T |
4: 124,718,075 (GRCm39) |
|
probably benign |
Het |
| Neb |
T |
C |
2: 52,051,489 (GRCm39) |
|
probably null |
Het |
| Nop9 |
A |
G |
14: 55,991,205 (GRCm39) |
S621G |
probably benign |
Het |
| Or1e19 |
A |
G |
11: 73,316,581 (GRCm39) |
V76A |
probably damaging |
Het |
| Or5p60 |
A |
G |
7: 107,724,023 (GRCm39) |
V149A |
probably benign |
Het |
| Or9a2 |
T |
A |
6: 41,748,829 (GRCm39) |
I135F |
possibly damaging |
Het |
| Pacs1 |
A |
T |
19: 5,322,611 (GRCm39) |
Y102* |
probably null |
Het |
| Pcdhb10 |
A |
C |
18: 37,545,485 (GRCm39) |
D187A |
probably damaging |
Het |
| Pih1d2 |
A |
G |
9: 50,532,403 (GRCm39) |
R170G |
possibly damaging |
Het |
| Pikfyve |
A |
G |
1: 65,235,865 (GRCm39) |
H179R |
probably damaging |
Het |
| Pknox1 |
A |
G |
17: 31,811,193 (GRCm39) |
S156G |
probably damaging |
Het |
| Prkcz |
T |
A |
4: 155,353,597 (GRCm39) |
D250V |
probably damaging |
Het |
| Psg16 |
T |
A |
7: 16,829,088 (GRCm39) |
I224N |
probably benign |
Het |
| Ro60 |
A |
G |
1: 143,641,661 (GRCm39) |
|
probably benign |
Het |
| Slc25a40 |
T |
A |
5: 8,497,348 (GRCm39) |
S229T |
probably benign |
Het |
| Slc43a2 |
T |
C |
11: 75,435,493 (GRCm39) |
|
probably benign |
Het |
| Snrnp40 |
C |
G |
4: 130,271,836 (GRCm39) |
|
probably null |
Het |
| Tas2r129 |
G |
T |
6: 132,928,159 (GRCm39) |
C32F |
probably benign |
Het |
| Tfap2d |
C |
T |
1: 19,174,591 (GRCm39) |
R15C |
possibly damaging |
Het |
| Tonsl |
T |
C |
15: 76,523,884 (GRCm39) |
S39G |
probably benign |
Het |
| Trpc2 |
A |
G |
7: 101,742,727 (GRCm39) |
|
probably benign |
Het |
| Ttc17 |
A |
G |
2: 94,208,439 (GRCm39) |
F144S |
probably benign |
Het |
| Twnk |
G |
T |
19: 44,996,578 (GRCm39) |
G337V |
possibly damaging |
Het |
| Uvssa |
A |
G |
5: 33,546,168 (GRCm39) |
R180G |
possibly damaging |
Het |
| Vmn1r197 |
T |
A |
13: 22,512,241 (GRCm39) |
I54K |
possibly damaging |
Het |
| Vmn1r71 |
G |
A |
7: 10,482,238 (GRCm39) |
T84I |
probably benign |
Het |
| Zbtb49 |
T |
C |
5: 38,358,174 (GRCm39) |
E693G |
probably benign |
Het |
|
| Other mutations in Cux2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00424:Cux2
|
APN |
5 |
122,006,601 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL00917:Cux2
|
APN |
5 |
122,007,168 (GRCm39) |
missense |
probably null |
0.05 |
|
IGL00979:Cux2
|
APN |
5 |
122,011,777 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01069:Cux2
|
APN |
5 |
122,005,414 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
IGL01303:Cux2
|
APN |
5 |
122,003,991 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL01583:Cux2
|
APN |
5 |
122,012,170 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL01762:Cux2
|
APN |
5 |
122,011,208 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02508:Cux2
|
APN |
5 |
121,998,885 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R0333:Cux2
|
UTSW |
5 |
121,998,671 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0352:Cux2
|
UTSW |
5 |
122,022,802 (GRCm39) |
splice site |
probably benign |
|
|
R1853:Cux2
|
UTSW |
5 |
122,007,184 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R2011:Cux2
|
UTSW |
5 |
121,999,389 (GRCm39) |
missense |
probably benign |
0.21 |
|
R2057:Cux2
|
UTSW |
5 |
122,007,567 (GRCm39) |
missense |
probably benign |
0.02 |
|
R2165:Cux2
|
UTSW |
5 |
122,025,540 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R3964:Cux2
|
UTSW |
5 |
122,025,539 (GRCm39) |
nonsense |
probably null |
|
|
R4182:Cux2
|
UTSW |
5 |
122,006,555 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4579:Cux2
|
UTSW |
5 |
121,998,716 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4655:Cux2
|
UTSW |
5 |
122,023,997 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4673:Cux2
|
UTSW |
5 |
122,025,539 (GRCm39) |
nonsense |
probably null |
|
|
R4697:Cux2
|
UTSW |
5 |
122,011,816 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4927:Cux2
|
UTSW |
5 |
122,015,152 (GRCm39) |
missense |
probably benign |
0.13 |
|
R5348:Cux2
|
UTSW |
5 |
122,004,041 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6208:Cux2
|
UTSW |
5 |
121,998,885 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6500:Cux2
|
UTSW |
5 |
122,002,789 (GRCm39) |
missense |
probably benign |
0.03 |
|
R6661:Cux2
|
UTSW |
5 |
122,007,360 (GRCm39) |
missense |
probably benign |
0.04 |
|
R6986:Cux2
|
UTSW |
5 |
122,006,642 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R7296:Cux2
|
UTSW |
5 |
121,999,319 (GRCm39) |
missense |
probably benign |
0.25 |
|
R7561:Cux2
|
UTSW |
5 |
122,017,931 (GRCm39) |
missense |
probably benign |
0.31 |
|
R7702:Cux2
|
UTSW |
5 |
122,006,648 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R7705:Cux2
|
UTSW |
5 |
122,007,736 (GRCm39) |
missense |
probably benign |
0.13 |
|
R7791:Cux2
|
UTSW |
5 |
122,005,162 (GRCm39) |
missense |
probably benign |
0.10 |
|
R7998:Cux2
|
UTSW |
5 |
122,006,648 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R8081:Cux2
|
UTSW |
5 |
122,007,519 (GRCm39) |
missense |
probably benign |
0.13 |
|
R8096:Cux2
|
UTSW |
5 |
122,007,160 (GRCm39) |
missense |
possibly damaging |
0.70 |
|
R8191:Cux2
|
UTSW |
5 |
122,012,217 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8794:Cux2
|
UTSW |
5 |
122,007,306 (GRCm39) |
missense |
probably benign |
0.31 |
|
R8957:Cux2
|
UTSW |
5 |
121,999,011 (GRCm39) |
missense |
probably benign |
0.36 |
|
R9601:Cux2
|
UTSW |
5 |
122,025,461 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R9749:Cux2
|
UTSW |
5 |
122,007,780 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9765:Cux2
|
UTSW |
5 |
122,007,195 (GRCm39) |
missense |
probably benign |
0.00 |
|
X0027:Cux2
|
UTSW |
5 |
122,022,814 (GRCm39) |
missense |
probably benign |
0.13 |
|
Z1176:Cux2
|
UTSW |
5 |
122,023,997 (GRCm39) |
missense |
probably benign |
0.02 |
|
Z1176:Cux2
|
UTSW |
5 |
122,011,876 (GRCm39) |
nonsense |
probably null |
|
|
Z1177:Cux2
|
UTSW |
5 |
122,015,192 (GRCm39) |
missense |
probably benign |
0.13 |
|
Z1177:Cux2
|
UTSW |
5 |
122,011,743 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGTAGTGCATGGTAGCACAGCAG -3'
(R):5'- TGACTCCAAGTGGCTCCTACAGAC -3'
Sequencing Primer
(F):5'- ATAATTCAGTGTCACCCAGATCCTG -3'
(R):5'- GCTCCTACAGACCGTGC -3'
|
| Posted On |
2013-05-23 |
Incidental Mutation