Mutagenetix > Incidental Mutation

Incidental Mutation 'R5114:Gbp2b'

394066

Institutional Source

Beutler Lab

Gene Symbol

Gbp2b

Ensembl Gene

ENSMUSG00000040264

Gene Name

guanylate binding protein 2b

Synonyms

Mag-1, Mpa-1, Mpa1, Gbp-1, Gbp1

MMRRC Submission

042702-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5114 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

142300608-142324940 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 142303946 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 14 (I14F)

Ref Sequence

ENSEMBL: ENSMUSP00000029936 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029936]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000029936
AA Change: I14F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000029936
Gene: ENSMUSG00000040264
AA Change: I14F

Domain	Start	End	E-Value	Type
Pfam:GBP	18	280	4.1e-122	PFAM
Pfam:GBP_C	282	578	5.5e-125	PFAM

Meta Mutation Damage Score

0.5619

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.9%

Validation Efficiency

99% (93/94)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the guanylate-binding protein (GBP) family. GBPs specifically bind guanine nucleotides (GMP, GDP, and GTP) and contain two of the three consensus motifs found in typical GTP-binding proteins. The encoded protein interacts with a member of the germinal center kinase family. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2017]
PHENOTYPE: Mice homozygous for a targeted allele exhibit increased susceptibility to bacterial infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5830454E08Rik	T	A	9: 120,406,693 (GRCm39)		probably benign	Het
Ada	G	A	2: 163,572,406 (GRCm39)	R225C	probably benign	Het
Adamts9	T	C	6: 92,867,254 (GRCm39)	K625R	probably benign	Het
Ano1	T	C	7: 144,210,820 (GRCm39)	I182V	possibly damaging	Het
Aoc1l2	A	T	6: 48,908,292 (GRCm39)	M431L	probably benign	Het
Aox4	T	C	1: 58,285,445 (GRCm39)	V643A	possibly damaging	Het
Arcn1	T	C	9: 44,671,441 (GRCm39)	I29V	probably benign	Het
Arhgap15	A	G	2: 43,670,630 (GRCm39)	T5A	probably benign	Het
Asb10	A	T	5: 24,745,740 (GRCm39)	L62Q	probably damaging	Het
Atp23	T	A	10: 126,723,403 (GRCm39)	H233L	possibly damaging	Het
Bglap2	C	T	3: 88,289,432 (GRCm39)		probably benign	Het
Carnmt1	T	C	19: 18,655,098 (GRCm39)	S84P	probably damaging	Het
Ccdc152	A	G	15: 3,312,319 (GRCm39)	I180T	probably damaging	Het
Cdr2l	T	C	11: 115,284,186 (GRCm39)	F174S	probably damaging	Het
Celsr2	C	T	3: 108,301,312 (GRCm39)	V2695I	probably benign	Het
Chd1	C	A	17: 15,948,460 (GRCm39)	S127R	probably benign	Het
Chmp4c	T	A	3: 10,450,646 (GRCm39)	F75L	probably benign	Het
Col13a1	A	C	10: 61,725,880 (GRCm39)	V260G	possibly damaging	Het
Col5a1	A	G	2: 27,915,664 (GRCm39)	N183D	probably damaging	Het
Cpn1	C	T	19: 43,974,634 (GRCm39)	V32M	probably damaging	Het
Cxcl1	A	G	5: 91,039,373 (GRCm39)	M39V	probably benign	Het
Dpep2	T	A	8: 106,712,825 (GRCm39)	D455V	probably damaging	Het
Dpp7	G	A	2: 25,242,749 (GRCm39)	T441I	possibly damaging	Het
Dst	C	A	1: 34,241,640 (GRCm39)	H4001N	probably damaging	Het
Epg5	G	A	18: 78,038,828 (GRCm39)	A1519T	probably benign	Het
Esrp2	C	T	8: 106,858,820 (GRCm39)	V606I	probably benign	Het
Fbxo40	T	C	16: 36,789,236 (GRCm39)	K625E	probably damaging	Het
Gpr37l1	G	T	1: 135,094,676 (GRCm39)	F189L	probably damaging	Het
Heatr5a	G	A	12: 52,003,020 (GRCm39)	Q161*	probably null	Het
Hspa4l	T	C	3: 40,700,197 (GRCm39)	Y30H	possibly damaging	Het
Hspg2	G	A	4: 137,239,237 (GRCm39)	C388Y	probably damaging	Het
Kcna1	A	G	6: 126,619,330 (GRCm39)	I330T	probably damaging	Het
Klhl3	T	A	13: 58,166,781 (GRCm39)	Y350F	probably benign	Het
Kntc1	T	C	5: 123,919,118 (GRCm39)		probably null	Het
Krtap10-4	A	T	10: 77,662,520 (GRCm39)	C109*	probably null	Het
Lrch4	T	C	5: 137,636,179 (GRCm39)	S377P	probably benign	Het
Lrrc8c	C	A	5: 105,755,349 (GRCm39)	H375N	probably damaging	Het
Lsg1	T	C	16: 30,380,538 (GRCm39)	E633G	probably damaging	Het
Mcoln1	T	C	8: 3,560,697 (GRCm39)		probably benign	Het
Med12l	C	A	3: 59,167,109 (GRCm39)	T1523K	possibly damaging	Het
Mrps27	A	T	13: 99,547,973 (GRCm39)		probably benign	Het
Mzb1	T	A	18: 35,780,717 (GRCm39)	Y158F	probably benign	Het
Nat8l	T	A	5: 34,155,823 (GRCm39)	C160S	probably damaging	Het
Ncf4	T	C	15: 78,146,593 (GRCm39)		probably benign	Het
Or1b1	A	T	2: 36,994,814 (GRCm39)	Y283N	probably damaging	Het
Or1o3	T	C	17: 37,573,730 (GRCm39)	Y275C	probably damaging	Het
Pak2	T	A	16: 31,861,936 (GRCm39)		probably benign	Het
Pcdhga12	T	C	18: 37,901,160 (GRCm39)	I664T	probably benign	Het
Pcnx2	A	C	8: 126,564,749 (GRCm39)	L1048R	possibly damaging	Het
Pcsk5	T	C	19: 17,652,949 (GRCm39)	M246V	probably damaging	Het
Pkd2l2	T	A	18: 34,566,355 (GRCm39)	V522D	probably benign	Het
Plekhh1	A	T	12: 79,115,880 (GRCm39)	M808L	probably benign	Het
Plpp2	C	A	10: 79,362,973 (GRCm39)	R157L	probably benign	Het
Plrg1	T	A	3: 82,978,558 (GRCm39)	H441Q	probably benign	Het
Pnpla6	T	C	8: 3,572,613 (GRCm39)	V300A	probably damaging	Het
Ptprb	A	T	10: 116,184,088 (GRCm39)	K1633N	possibly damaging	Het
Ralgapa1	A	G	12: 55,659,508 (GRCm39)	V2004A	possibly damaging	Het
Rasd1	G	T	11: 59,854,933 (GRCm39)	S182R	possibly damaging	Het
Rc3h2	A	T	2: 37,288,373 (GRCm39)		probably null	Het
Rrp1b	T	A	17: 32,255,445 (GRCm39)		probably benign	Het
Ruvbl1	T	C	6: 88,474,272 (GRCm39)	I425T	probably benign	Het
Shisal1	T	C	15: 84,301,427 (GRCm39)	D72G	probably damaging	Het
Sipa1l1	C	T	12: 82,487,682 (GRCm39)	A1652V	probably benign	Het
Slc12a2	A	G	18: 58,032,344 (GRCm39)	Y348C	probably damaging	Het
Slc14a2	C	A	18: 78,238,963 (GRCm39)	V219L	possibly damaging	Het
Smc1b	G	T	15: 84,949,185 (GRCm39)	P1242Q	probably damaging	Het
Smim33	A	G	18: 35,861,894 (GRCm39)	Y126C	probably damaging	Het
Snx27	T	A	3: 94,431,551 (GRCm39)	D281V	probably damaging	Het
Spem2	C	T	11: 69,707,973 (GRCm39)	V331I	probably benign	Het
Sptb	C	A	12: 76,656,052 (GRCm39)	K1343N	probably damaging	Het
Sult2a8	T	C	7: 14,147,584 (GRCm39)	I236V	probably benign	Het
Syk	A	G	13: 52,765,071 (GRCm39)	E66G	probably damaging	Het
Synm	T	A	7: 67,385,406 (GRCm39)	E310V	probably damaging	Het
Tas2r118	G	A	6: 23,969,209 (GRCm39)	A284V	probably benign	Het
Thoc2l	T	A	5: 104,667,742 (GRCm39)	F755I	probably damaging	Het
Tlr11	A	G	14: 50,600,578 (GRCm39)	N855D	possibly damaging	Het
Tmem230	G	T	2: 132,087,871 (GRCm39)		probably benign	Het
Trappc8	G	A	18: 20,977,237 (GRCm39)	T844I	probably benign	Het
Trmt44	T	C	5: 35,722,812 (GRCm39)	S419G	possibly damaging	Het
Trpv1	T	A	11: 73,132,574 (GRCm39)	V396E	probably damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Tubgcp2	A	G	7: 139,587,354 (GRCm39)	I337T	possibly damaging	Het
Ubr4	T	C	4: 139,137,934 (GRCm39)	I1097T	probably damaging	Het
Vmn2r61	T	C	7: 41,949,953 (GRCm39)	F791S	possibly damaging	Het
Zdhhc2	T	A	8: 40,898,825 (GRCm39)	M45K	probably benign	Het
Zfp383	T	A	7: 29,614,166 (GRCm39)	D140E	probably damaging	Het
Zfp712	C	A	13: 67,189,425 (GRCm39)	K367N	probably damaging	Het
Zfp763	C	T	17: 33,237,949 (GRCm39)	A399T	probably damaging	Het

Other mutations in Gbp2b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01637:Gbp2b	APN	3	142,304,073 (GRCm39)	missense	probably damaging	1.00
IGL01892:Gbp2b	APN	3	142,309,381 (GRCm39)	missense	probably benign	0.03
IGL01989:Gbp2b	APN	3	142,317,201 (GRCm39)	missense	probably benign	0.19
IGL02019:Gbp2b	APN	3	142,312,751 (GRCm39)	missense	possibly damaging	0.52
IGL02338:Gbp2b	APN	3	142,309,987 (GRCm39)	missense	probably benign	0.09
IGL02657:Gbp2b	APN	3	142,309,873 (GRCm39)	missense	probably damaging	1.00
IGL03148:Gbp2b	APN	3	142,312,642 (GRCm39)	missense	probably benign	0.00
FR4304:Gbp2b	UTSW	3	142,309,413 (GRCm39)	missense	probably benign	0.00
FR4340:Gbp2b	UTSW	3	142,309,413 (GRCm39)	missense	probably benign	0.00
FR4342:Gbp2b	UTSW	3	142,309,413 (GRCm39)	missense	probably benign	0.00
FR4589:Gbp2b	UTSW	3	142,309,413 (GRCm39)	missense	probably benign	0.00
R0329:Gbp2b	UTSW	3	142,313,937 (GRCm39)	missense	probably benign	0.01
R0345:Gbp2b	UTSW	3	142,313,944 (GRCm39)	missense	probably damaging	1.00
R0358:Gbp2b	UTSW	3	142,312,550 (GRCm39)	missense	probably damaging	1.00
R0732:Gbp2b	UTSW	3	142,312,739 (GRCm39)	missense	probably benign
R1163:Gbp2b	UTSW	3	142,304,857 (GRCm39)	missense	probably damaging	1.00
R1550:Gbp2b	UTSW	3	142,312,591 (GRCm39)	missense	probably damaging	0.99
R1629:Gbp2b	UTSW	3	142,316,735 (GRCm39)	missense	possibly damaging	0.93
R1886:Gbp2b	UTSW	3	142,314,063 (GRCm39)	missense	probably benign
R1887:Gbp2b	UTSW	3	142,314,063 (GRCm39)	missense	probably benign
R2188:Gbp2b	UTSW	3	142,314,040 (GRCm39)	missense	probably benign	0.44
R2261:Gbp2b	UTSW	3	142,312,496 (GRCm39)	missense	probably benign	0.00
R3977:Gbp2b	UTSW	3	142,309,470 (GRCm39)	missense	probably benign	0.02
R4718:Gbp2b	UTSW	3	142,304,756 (GRCm39)	missense	probably damaging	1.00
R4788:Gbp2b	UTSW	3	142,317,171 (GRCm39)	missense	probably benign	0.21
R4807:Gbp2b	UTSW	3	142,304,006 (GRCm39)	missense	probably benign	0.02
R5042:Gbp2b	UTSW	3	142,317,224 (GRCm39)	missense	probably benign	0.03
R5087:Gbp2b	UTSW	3	142,304,015 (GRCm39)	missense	probably damaging	1.00
R5414:Gbp2b	UTSW	3	142,304,852 (GRCm39)	missense	probably damaging	1.00
R5567:Gbp2b	UTSW	3	142,317,126 (GRCm39)	missense	possibly damaging	0.75
R5625:Gbp2b	UTSW	3	142,304,806 (GRCm39)	missense	probably damaging	1.00
R5685:Gbp2b	UTSW	3	142,313,919 (GRCm39)	missense	probably benign
R6030:Gbp2b	UTSW	3	142,309,414 (GRCm39)	missense	probably benign	0.00
R6030:Gbp2b	UTSW	3	142,309,414 (GRCm39)	missense	probably benign	0.00
R6408:Gbp2b	UTSW	3	142,323,899 (GRCm39)	missense	probably benign	0.00
R6500:Gbp2b	UTSW	3	142,317,252 (GRCm39)	missense	probably benign	0.06
R6581:Gbp2b	UTSW	3	142,313,999 (GRCm39)	nonsense	probably null
R6582:Gbp2b	UTSW	3	142,316,801 (GRCm39)	missense	possibly damaging	0.53
R6847:Gbp2b	UTSW	3	142,303,940 (GRCm39)	missense	probably damaging	0.96
R6923:Gbp2b	UTSW	3	142,306,320 (GRCm39)	missense	probably benign	0.01
R7120:Gbp2b	UTSW	3	142,312,507 (GRCm39)	missense	probably benign	0.01
R7255:Gbp2b	UTSW	3	142,313,878 (GRCm39)	missense	probably damaging	1.00
R7454:Gbp2b	UTSW	3	142,303,920 (GRCm39)	missense	possibly damaging	0.75
R7643:Gbp2b	UTSW	3	142,309,370 (GRCm39)	missense	probably benign	0.07
R8039:Gbp2b	UTSW	3	142,323,925 (GRCm39)	missense	probably benign	0.02
R8312:Gbp2b	UTSW	3	142,304,815 (GRCm39)	missense	probably damaging	0.96
R8312:Gbp2b	UTSW	3	142,304,812 (GRCm39)	missense	probably benign
R8391:Gbp2b	UTSW	3	142,309,894 (GRCm39)	missense	probably damaging	1.00
R8418:Gbp2b	UTSW	3	142,309,466 (GRCm39)	missense	probably benign	0.01
R8721:Gbp2b	UTSW	3	142,312,705 (GRCm39)	missense	possibly damaging	0.93
R8842:Gbp2b	UTSW	3	142,312,576 (GRCm39)	missense	probably benign
R8849:Gbp2b	UTSW	3	142,313,913 (GRCm39)	missense	probably benign	0.00
R8874:Gbp2b	UTSW	3	142,314,040 (GRCm39)	missense	probably benign	0.03
R8896:Gbp2b	UTSW	3	142,309,327 (GRCm39)	missense	probably damaging	1.00
R8992:Gbp2b	UTSW	3	142,316,730 (GRCm39)	missense	probably benign	0.00
R9339:Gbp2b	UTSW	3	142,317,178 (GRCm39)	missense	probably benign	0.01
R9752:Gbp2b	UTSW	3	142,313,917 (GRCm39)	missense	probably benign	0.16
Z1177:Gbp2b	UTSW	3	142,310,077 (GRCm39)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- TGTGTGCTGCTATTGTACCC -3'
(R):5'- TCACATTTGCTTTCTGGATACTGAC -3'

Sequencing Primer
(F):5'- CCCTCTGGTTTATAACAGAATGC -3'
(R):5'- CTTTCTGGATACTGACAGTGGAAG -3'

Posted On

2016-06-15