Incidental Mutation 'R5648:Or4a80'
| ID |
441255 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4a80
|
| Ensembl Gene |
ENSMUSG00000075075 |
| Gene Name |
olfactory receptor family 4 subfamily A member 80 |
| Synonyms |
MOR231-19P, MOR231-19P, MOR231-18, GA_x6K02T2Q125-51193814-51192857, Olfr1253, Olfr1559-ps1, Olfr1253-ps1 |
| MMRRC Submission |
043169-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.056)
|
| Stock # |
R5648 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
2 |
| Chromosomal Location |
89582214-89583170 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to C
at 89582417 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Cysteine to Glycine
at position 252
(C252G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151024
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000099765]
[ENSMUST00000213484]
[ENSMUST00000215185]
[ENSMUST00000215988]
|
| AlphaFold |
A2AUA2 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000099765
AA Change: C252G
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000097353
Gene: ENSMUSG00000075075
AA Change: C252G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
29 |
303 |
9.2e-46 |
PFAM |
|
Pfam:7tm_1
|
39 |
285 |
1.1e-19 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000213484
AA Change: C252G
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000215185
AA Change: C252G
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000215988
AA Change: C252G
PolyPhen 2
Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)
|
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.8%
- 10x: 97.5%
- 20x: 95.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 42 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca2 |
T |
C |
2: 25,326,510 (GRCm39) |
|
probably null |
Het |
| Alpk2 |
A |
G |
18: 65,482,988 (GRCm39) |
V340A |
probably damaging |
Het |
| Cald1 |
G |
T |
6: 34,739,267 (GRCm39) |
|
probably null |
Het |
| Col24a1 |
C |
T |
3: 145,064,321 (GRCm39) |
T702I |
probably benign |
Het |
| Ddx50 |
T |
C |
10: 62,452,049 (GRCm39) |
R725G |
unknown |
Het |
| Dnah9 |
A |
T |
11: 65,818,581 (GRCm39) |
F68L |
probably benign |
Het |
| Dnmt3b |
G |
A |
2: 153,519,118 (GRCm39) |
V651M |
probably damaging |
Het |
| Dock1 |
G |
A |
7: 134,348,683 (GRCm39) |
C299Y |
probably damaging |
Het |
| Epha4 |
T |
C |
1: 77,375,162 (GRCm39) |
I562V |
probably benign |
Het |
| Esco2 |
A |
T |
14: 66,068,641 (GRCm39) |
V223D |
probably damaging |
Het |
| Ggt6 |
T |
C |
11: 72,326,542 (GRCm39) |
I33T |
possibly damaging |
Het |
| Gm10392 |
A |
T |
11: 77,408,306 (GRCm39) |
D104E |
probably benign |
Het |
| Gm9847 |
A |
G |
12: 14,545,130 (GRCm39) |
|
noncoding transcript |
Het |
| Gnao1 |
A |
T |
8: 94,676,070 (GRCm39) |
Y116F |
probably damaging |
Het |
| Gvin1 |
A |
T |
7: 105,762,606 (GRCm39) |
I621K |
possibly damaging |
Het |
| Hyal6 |
T |
C |
6: 24,734,235 (GRCm39) |
M56T |
possibly damaging |
Het |
| Hyou1 |
T |
A |
9: 44,296,546 (GRCm39) |
D490E |
probably damaging |
Het |
| Igsf10 |
G |
C |
3: 59,235,574 (GRCm39) |
Q1536E |
probably benign |
Het |
| Klk1b8 |
T |
C |
7: 43,448,068 (GRCm39) |
S31P |
possibly damaging |
Het |
| Map3k6 |
A |
C |
4: 132,970,646 (GRCm39) |
I178L |
probably benign |
Het |
| Mycbp2 |
T |
A |
14: 103,528,778 (GRCm39) |
N427Y |
probably damaging |
Het |
| Ncr1 |
T |
A |
7: 4,347,519 (GRCm39) |
I228N |
probably damaging |
Het |
| Nefh |
A |
T |
11: 4,895,233 (GRCm39) |
Y319N |
probably damaging |
Het |
| Pakap |
T |
C |
4: 57,854,848 (GRCm39) |
V120A |
probably damaging |
Het |
| Pcdhb18 |
G |
A |
18: 37,623,537 (GRCm39) |
R289Q |
probably benign |
Het |
| Pkhd1 |
T |
A |
1: 20,628,850 (GRCm39) |
Y699F |
probably benign |
Het |
| Plekhd1 |
T |
C |
12: 80,767,362 (GRCm39) |
L250P |
probably damaging |
Het |
| Reln |
A |
G |
5: 22,203,570 (GRCm39) |
V1228A |
probably benign |
Het |
| Rhobtb2 |
G |
T |
14: 70,034,593 (GRCm39) |
R211S |
probably damaging |
Het |
| Rps6kb1 |
T |
C |
11: 86,403,697 (GRCm39) |
I305V |
possibly damaging |
Het |
| Slc12a2 |
G |
A |
18: 58,029,382 (GRCm39) |
G256E |
possibly damaging |
Het |
| Slc4a1ap |
A |
G |
5: 31,708,129 (GRCm39) |
|
probably null |
Het |
| Thoc1 |
A |
G |
18: 9,962,390 (GRCm39) |
T92A |
possibly damaging |
Het |
| Ticam1 |
TCACACA |
TCACA |
17: 56,577,629 (GRCm39) |
|
probably null |
Het |
| Tmem117 |
T |
G |
15: 94,992,653 (GRCm39) |
S438A |
possibly damaging |
Het |
| Ttll7 |
A |
G |
3: 146,667,465 (GRCm39) |
N777S |
probably damaging |
Het |
| Ubd |
T |
A |
17: 37,506,345 (GRCm39) |
V77E |
probably damaging |
Het |
| Ubqln3 |
A |
G |
7: 103,790,117 (GRCm39) |
S658P |
probably damaging |
Het |
| Vmn1r78 |
G |
A |
7: 11,886,693 (GRCm39) |
M101I |
possibly damaging |
Het |
| Wdr93 |
T |
C |
7: 79,426,974 (GRCm39) |
C638R |
probably benign |
Het |
| Zfp983 |
T |
A |
17: 21,877,947 (GRCm39) |
V50D |
probably damaging |
Het |
| Zhx3 |
A |
T |
2: 160,623,881 (GRCm39) |
H95Q |
probably damaging |
Het |
|
| Other mutations in Or4a80 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01938:Or4a80
|
APN |
2 |
89,582,692 (GRCm39) |
missense |
probably benign |
0.12 |
|
IGL02287:Or4a80
|
APN |
2 |
89,582,958 (GRCm39) |
nonsense |
probably null |
|
|
IGL03149:Or4a80
|
APN |
2 |
89,583,172 (GRCm39) |
splice site |
probably null |
|
|
R0017:Or4a80
|
UTSW |
2 |
89,582,365 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R1466:Or4a80
|
UTSW |
2 |
89,582,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1466:Or4a80
|
UTSW |
2 |
89,582,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1584:Or4a80
|
UTSW |
2 |
89,582,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2008:Or4a80
|
UTSW |
2 |
89,582,417 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R2484:Or4a80
|
UTSW |
2 |
89,582,578 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5135:Or4a80
|
UTSW |
2 |
89,582,239 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R6021:Or4a80
|
UTSW |
2 |
89,582,465 (GRCm39) |
missense |
probably benign |
0.13 |
|
R6952:Or4a80
|
UTSW |
2 |
89,582,971 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R7039:Or4a80
|
UTSW |
2 |
89,583,095 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7088:Or4a80
|
UTSW |
2 |
89,582,443 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7443:Or4a80
|
UTSW |
2 |
89,582,285 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7444:Or4a80
|
UTSW |
2 |
89,583,103 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7538:Or4a80
|
UTSW |
2 |
89,582,665 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7594:Or4a80
|
UTSW |
2 |
89,582,906 (GRCm39) |
missense |
probably benign |
0.32 |
|
R7818:Or4a80
|
UTSW |
2 |
89,582,288 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R7964:Or4a80
|
UTSW |
2 |
89,583,158 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R8358:Or4a80
|
UTSW |
2 |
89,582,423 (GRCm39) |
missense |
probably benign |
0.24 |
|
R8438:Or4a80
|
UTSW |
2 |
89,583,061 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8493:Or4a80
|
UTSW |
2 |
89,582,599 (GRCm39) |
missense |
probably benign |
0.06 |
|
R8724:Or4a80
|
UTSW |
2 |
89,582,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8785:Or4a80
|
UTSW |
2 |
89,583,298 (GRCm39) |
start gained |
probably benign |
|
|
R9668:Or4a80
|
UTSW |
2 |
89,582,636 (GRCm39) |
missense |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- ACTCACACCACAAGGGCTTG -3'
(R):5'- CCTCACTATCATTGCTAATGGTGG -3'
Sequencing Primer
(F):5'- CCCAGTGCTTAGTCATATGAGCAG -3'
(R):5'- GAGCCATGTGTATTGTCATCTTC -3'
|
| Posted On |
2016-11-08 |
Incidental Mutation