Mutagenetix > Incidental Mutation

Incidental Mutation 'R5648:Nefh'

441277

Institutional Source

Beutler Lab

Gene Symbol

Nefh

Ensembl Gene

ENSMUSG00000020396

Gene Name

neurofilament, heavy polypeptide

Synonyms

NF200, NF-H, NEFH

MMRRC Submission

043169-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5648 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

4888754-4898064 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 4895233 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 319 (Y319N)

Ref Sequence

ENSEMBL: ENSMUSP00000091061 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000093369]

AlphaFold

P19246

Predicted Effect

probably damaging
Transcript: ENSMUST00000093369
AA Change: Y319N

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000091061
Gene: ENSMUSG00000020396
AA Change: Y319N

Domain	Start	End	E-Value	Type
low complexity region	32	46	N/A	INTRINSIC
low complexity region	49	64	N/A	INTRINSIC
Filament	94	410	1.45e-109	SMART
low complexity region	470	515	N/A	INTRINSIC
Pfam:DUF1388	519	545	1.8e-14	PFAM
Pfam:DUF1388	536	562	5.8e-15	PFAM
Pfam:DUF1388	542	569	2.7e-12	PFAM
Pfam:DUF1388	578	611	9.7e-10	PFAM
Pfam:DUF1388	602	629	4.9e-14	PFAM
Pfam:DUF1388	608	635	4.7e-14	PFAM
Pfam:DUF1388	626	653	1.4e-13	PFAM
Pfam:DUF1388	632	659	2.5e-13	PFAM
Pfam:DUF1388	656	683	4.4e-14	PFAM
Pfam:DUF1388	680	706	1.5e-12	PFAM
Pfam:DUF1388	700	730	5e-12	PFAM
Pfam:DUF1388	728	755	7.9e-14	PFAM
Pfam:DUF1388	752	779	4.7e-14	PFAM
Pfam:DUF1388	779	800	1.9e-9	PFAM
low complexity region	816	829	N/A	INTRINSIC
low complexity region	858	948	N/A	INTRINSIC
low complexity region	949	968	N/A	INTRINSIC
low complexity region	976	1039	N/A	INTRINSIC

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.5%
20x: 95.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Neurofilaments are type IV intermediate filament heteropolymers composed of light, medium, and heavy chains. Neurofilaments comprise the axoskeleton and functionally maintain neuronal caliber. They may also play a role in intracellular transport to axons and dendrites. This gene encodes the heavy neurofilament protein. This protein is commonly used as a biomarker of neuronal damage and susceptibility to amyotrophic lateral sclerosis (ALS) has been associated with mutations in this gene. [provided by RefSeq, Oct 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased axon diameter and transport. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	T	C	2: 25,326,510 (GRCm39)		probably null	Het
Alpk2	A	G	18: 65,482,988 (GRCm39)	V340A	probably damaging	Het
Cald1	G	T	6: 34,739,267 (GRCm39)		probably null	Het
Col24a1	C	T	3: 145,064,321 (GRCm39)	T702I	probably benign	Het
Ddx50	T	C	10: 62,452,049 (GRCm39)	R725G	unknown	Het
Dnah9	A	T	11: 65,818,581 (GRCm39)	F68L	probably benign	Het
Dnmt3b	G	A	2: 153,519,118 (GRCm39)	V651M	probably damaging	Het
Dock1	G	A	7: 134,348,683 (GRCm39)	C299Y	probably damaging	Het
Epha4	T	C	1: 77,375,162 (GRCm39)	I562V	probably benign	Het
Esco2	A	T	14: 66,068,641 (GRCm39)	V223D	probably damaging	Het
Ggt6	T	C	11: 72,326,542 (GRCm39)	I33T	possibly damaging	Het
Gm10392	A	T	11: 77,408,306 (GRCm39)	D104E	probably benign	Het
Gm9847	A	G	12: 14,545,130 (GRCm39)		noncoding transcript	Het
Gnao1	A	T	8: 94,676,070 (GRCm39)	Y116F	probably damaging	Het
Gvin1	A	T	7: 105,762,606 (GRCm39)	I621K	possibly damaging	Het
Hyal6	T	C	6: 24,734,235 (GRCm39)	M56T	possibly damaging	Het
Hyou1	T	A	9: 44,296,546 (GRCm39)	D490E	probably damaging	Het
Igsf10	G	C	3: 59,235,574 (GRCm39)	Q1536E	probably benign	Het
Klk1b8	T	C	7: 43,448,068 (GRCm39)	S31P	possibly damaging	Het
Map3k6	A	C	4: 132,970,646 (GRCm39)	I178L	probably benign	Het
Mycbp2	T	A	14: 103,528,778 (GRCm39)	N427Y	probably damaging	Het
Ncr1	T	A	7: 4,347,519 (GRCm39)	I228N	probably damaging	Het
Or4a80	A	C	2: 89,582,417 (GRCm39)	C252G	probably damaging	Het
Pakap	T	C	4: 57,854,848 (GRCm39)	V120A	probably damaging	Het
Pcdhb18	G	A	18: 37,623,537 (GRCm39)	R289Q	probably benign	Het
Pkhd1	T	A	1: 20,628,850 (GRCm39)	Y699F	probably benign	Het
Plekhd1	T	C	12: 80,767,362 (GRCm39)	L250P	probably damaging	Het
Reln	A	G	5: 22,203,570 (GRCm39)	V1228A	probably benign	Het
Rhobtb2	G	T	14: 70,034,593 (GRCm39)	R211S	probably damaging	Het
Rps6kb1	T	C	11: 86,403,697 (GRCm39)	I305V	possibly damaging	Het
Slc12a2	G	A	18: 58,029,382 (GRCm39)	G256E	possibly damaging	Het
Slc4a1ap	A	G	5: 31,708,129 (GRCm39)		probably null	Het
Thoc1	A	G	18: 9,962,390 (GRCm39)	T92A	possibly damaging	Het
Ticam1	TCACACA	TCACA	17: 56,577,629 (GRCm39)		probably null	Het
Tmem117	T	G	15: 94,992,653 (GRCm39)	S438A	possibly damaging	Het
Ttll7	A	G	3: 146,667,465 (GRCm39)	N777S	probably damaging	Het
Ubd	T	A	17: 37,506,345 (GRCm39)	V77E	probably damaging	Het
Ubqln3	A	G	7: 103,790,117 (GRCm39)	S658P	probably damaging	Het
Vmn1r78	G	A	7: 11,886,693 (GRCm39)	M101I	possibly damaging	Het
Wdr93	T	C	7: 79,426,974 (GRCm39)	C638R	probably benign	Het
Zfp983	T	A	17: 21,877,947 (GRCm39)	V50D	probably damaging	Het
Zhx3	A	T	2: 160,623,881 (GRCm39)	H95Q	probably damaging	Het

Other mutations in Nefh

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02931:Nefh	APN	11	4,891,356 (GRCm39)	missense	possibly damaging	0.71
IGL03025:Nefh	APN	11	4,895,289 (GRCm39)	missense	probably damaging	0.99
FR4340:Nefh	UTSW	11	4,891,040 (GRCm39)	small insertion	probably benign
FR4340:Nefh	UTSW	11	4,891,038 (GRCm39)	small insertion	probably benign
FR4340:Nefh	UTSW	11	4,891,033 (GRCm39)	small insertion	probably benign
R0041:Nefh	UTSW	11	4,895,184 (GRCm39)	missense	possibly damaging	0.92
R0149:Nefh	UTSW	11	4,890,799 (GRCm39)	missense	probably benign	0.39
R0361:Nefh	UTSW	11	4,890,799 (GRCm39)	missense	probably benign	0.39
R0531:Nefh	UTSW	11	4,890,240 (GRCm39)	missense	probably damaging	1.00
R1340:Nefh	UTSW	11	4,891,002 (GRCm39)	small insertion	probably benign
R1349:Nefh	UTSW	11	4,891,010 (GRCm39)	small insertion	probably benign
R1469:Nefh	UTSW	11	4,890,066 (GRCm39)	missense	probably benign	0.20
R1469:Nefh	UTSW	11	4,890,066 (GRCm39)	missense	probably benign	0.20
R1564:Nefh	UTSW	11	4,889,878 (GRCm39)	missense	unknown
R2165:Nefh	UTSW	11	4,893,872 (GRCm39)	missense	probably damaging	1.00
R2417:Nefh	UTSW	11	4,889,479 (GRCm39)	missense	unknown
R2906:Nefh	UTSW	11	4,890,216 (GRCm39)	missense	probably benign	0.15
R3750:Nefh	UTSW	11	4,889,937 (GRCm39)	missense	probably benign	0.33
R4298:Nefh	UTSW	11	4,890,066 (GRCm39)	missense	probably benign
R4462:Nefh	UTSW	11	4,891,015 (GRCm39)	missense	probably damaging	0.98
R4713:Nefh	UTSW	11	4,889,656 (GRCm39)	missense	unknown
R4878:Nefh	UTSW	11	4,891,333 (GRCm39)	missense	probably damaging	0.98
R5423:Nefh	UTSW	11	4,890,985 (GRCm39)	missense	possibly damaging	0.59
R5893:Nefh	UTSW	11	4,891,323 (GRCm39)	missense	probably damaging	1.00
R6459:Nefh	UTSW	11	4,889,551 (GRCm39)	missense	unknown
R7583:Nefh	UTSW	11	4,891,089 (GRCm39)	missense	probably damaging	0.96
R8557:Nefh	UTSW	11	4,891,233 (GRCm39)	missense	probably damaging	0.98
R8925:Nefh	UTSW	11	4,890,530 (GRCm39)	small deletion	probably benign
R8982:Nefh	UTSW	11	4,897,549 (GRCm39)	missense	probably damaging	1.00
R9101:Nefh	UTSW	11	4,890,925 (GRCm39)	missense	probably damaging	0.97
R9291:Nefh	UTSW	11	4,890,871 (GRCm39)	missense	probably benign	0.39
R9576:Nefh	UTSW	11	4,891,222 (GRCm39)	missense	possibly damaging	0.91
R9616:Nefh	UTSW	11	4,889,443 (GRCm39)	nonsense	probably null
R9709:Nefh	UTSW	11	4,890,042 (GRCm39)	missense	probably benign	0.44
R9781:Nefh	UTSW	11	4,895,271 (GRCm39)	missense	probably damaging	1.00
RF001:Nefh	UTSW	11	4,891,030 (GRCm39)	small insertion	probably benign
RF002:Nefh	UTSW	11	4,891,050 (GRCm39)	small insertion	probably benign
RF002:Nefh	UTSW	11	4,891,047 (GRCm39)	small insertion	probably benign
RF009:Nefh	UTSW	11	4,890,997 (GRCm39)	small insertion	probably benign
RF012:Nefh	UTSW	11	4,891,055 (GRCm39)	small insertion	probably benign
RF012:Nefh	UTSW	11	4,891,030 (GRCm39)	small insertion	probably benign
RF012:Nefh	UTSW	11	4,891,032 (GRCm39)	small insertion	probably benign
RF013:Nefh	UTSW	11	4,891,032 (GRCm39)	small insertion	probably benign
RF016:Nefh	UTSW	11	4,891,023 (GRCm39)	small insertion	probably benign
RF016:Nefh	UTSW	11	4,891,022 (GRCm39)	small insertion	probably benign
RF025:Nefh	UTSW	11	4,891,029 (GRCm39)	small insertion	probably benign
RF025:Nefh	UTSW	11	4,891,003 (GRCm39)	small insertion	probably benign
RF028:Nefh	UTSW	11	4,891,029 (GRCm39)	small insertion	probably benign
RF028:Nefh	UTSW	11	4,891,012 (GRCm39)	small insertion	probably benign
RF033:Nefh	UTSW	11	4,891,039 (GRCm39)	small insertion	probably benign
RF033:Nefh	UTSW	11	4,891,029 (GRCm39)	frame shift	probably null
RF035:Nefh	UTSW	11	4,891,039 (GRCm39)	small insertion	probably benign
RF036:Nefh	UTSW	11	4,891,048 (GRCm39)	small insertion	probably benign
RF036:Nefh	UTSW	11	4,891,036 (GRCm39)	small insertion	probably benign
RF036:Nefh	UTSW	11	4,891,016 (GRCm39)	small insertion	probably benign
RF036:Nefh	UTSW	11	4,891,010 (GRCm39)	small insertion	probably benign
RF037:Nefh	UTSW	11	4,891,054 (GRCm39)	small insertion	probably benign
RF037:Nefh	UTSW	11	4,891,046 (GRCm39)	small insertion	probably benign
RF037:Nefh	UTSW	11	4,890,999 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,019 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,018 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,012 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,040 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,029 (GRCm39)	small insertion	probably benign
RF038:Nefh	UTSW	11	4,891,027 (GRCm39)	small insertion	probably benign
RF039:Nefh	UTSW	11	4,891,007 (GRCm39)	small insertion	probably benign
RF041:Nefh	UTSW	11	4,891,039 (GRCm39)	small insertion	probably benign
RF043:Nefh	UTSW	11	4,891,016 (GRCm39)	small insertion	probably benign
RF044:Nefh	UTSW	11	4,891,023 (GRCm39)	small insertion	probably benign
RF044:Nefh	UTSW	11	4,891,021 (GRCm39)	small insertion	probably benign
RF044:Nefh	UTSW	11	4,891,016 (GRCm39)	small insertion	probably benign
RF047:Nefh	UTSW	11	4,891,038 (GRCm39)	small insertion	probably benign
RF048:Nefh	UTSW	11	4,891,007 (GRCm39)	small insertion	probably benign
RF048:Nefh	UTSW	11	4,891,003 (GRCm39)	small insertion	probably benign
RF049:Nefh	UTSW	11	4,890,997 (GRCm39)	small insertion	probably benign
RF051:Nefh	UTSW	11	4,891,054 (GRCm39)	small insertion	probably benign
RF053:Nefh	UTSW	11	4,891,014 (GRCm39)	nonsense	probably null
RF054:Nefh	UTSW	11	4,891,048 (GRCm39)	small insertion	probably benign
RF055:Nefh	UTSW	11	4,891,004 (GRCm39)	small insertion	probably benign
RF058:Nefh	UTSW	11	4,891,021 (GRCm39)	small insertion	probably benign
RF060:Nefh	UTSW	11	4,891,052 (GRCm39)	small insertion	probably benign
RF060:Nefh	UTSW	11	4,891,050 (GRCm39)	small insertion	probably benign
RF062:Nefh	UTSW	11	4,891,028 (GRCm39)	small insertion	probably benign
T0975:Nefh	UTSW	11	4,890,151 (GRCm39)	missense	probably benign	0.00
Z1186:Nefh	UTSW	11	4,890,530 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- AGGTCACACAACAGCAGATG -3'
(R):5'- GTGTATTAAATATCCTAGCACCCAG -3'

Sequencing Primer
(F):5'- CAGCAGATGTGAAGTCTGACTC -3'
(R):5'- CTAACCCTGTGTCCTGAT -3'

Posted On

2016-11-08