Incidental Mutation 'R5906:Zfp39'
ID 460647
Institutional Source Beutler Lab
Gene Symbol Zfp39
Ensembl Gene ENSMUSG00000037001
Gene Name zinc finger protein 39
Synonyms Zfp-39, CTfin33
MMRRC Submission 044103-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.153) question?
Stock # R5906 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 58778979-58795051 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 58793717 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 7 (D7G)
Ref Sequence ENSEMBL: ENSMUSP00000099764 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000102703]
AlphaFold Q02525
Predicted Effect probably benign
Transcript: ENSMUST00000102703
AA Change: D7G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000099764
Gene: ENSMUSG00000037001
AA Change: D7G

DomainStartEndE-ValueType
KRAB 59 119 8.23e-34 SMART
low complexity region 171 180 N/A INTRINSIC
ZnF_C2H2 298 320 9.58e-3 SMART
ZnF_C2H2 326 347 2.2e2 SMART
ZnF_C2H2 353 373 1.18e2 SMART
ZnF_C2H2 409 431 8.34e-3 SMART
ZnF_C2H2 437 459 7.26e-3 SMART
ZnF_C2H2 465 487 1.53e-1 SMART
ZnF_C2H2 493 515 9.08e-4 SMART
ZnF_C2H2 521 543 2.61e-4 SMART
ZnF_C2H2 549 571 1.12e-3 SMART
ZnF_C2H2 577 599 4.94e-5 SMART
ZnF_C2H2 605 627 5.14e-3 SMART
ZnF_C2H2 633 655 1.38e-3 SMART
ZnF_C2H2 661 683 6.78e-3 SMART
ZnF_C2H2 689 711 5.14e-3 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148244
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.4%
  • 10x: 97.4%
  • 20x: 92.4%
Validation Efficiency 95% (81/85)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a Kruppel-associated box (KRAB) zinc-finger protein, which belongs to a large group of transcriptional regulators in mammals. These proteins bind nucleic acids and play important roles in various cellular functions, including cell proliferation, differentiation and apoptosis, and in regulating viral replication and transcription. A pseudogene of this gene was identified on chromosome 1. [provided by RefSeq, May 2016]
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930438A08Rik C A 11: 58,182,260 (GRCm39) probably null Het
9130023H24Rik G A 7: 127,835,664 (GRCm39) P310S probably benign Het
Abcc10 G T 17: 46,627,485 (GRCm39) H652Q probably benign Het
Actl6b A G 5: 137,565,591 (GRCm39) I396V possibly damaging Het
Acvr1b T C 15: 101,091,772 (GRCm39) probably benign Het
Adamts18 A T 8: 114,436,251 (GRCm39) H989Q probably benign Het
Adamtsl4 T C 3: 95,588,094 (GRCm39) Y631C probably damaging Het
Angptl3 A G 4: 98,925,804 (GRCm39) T377A probably benign Het
Ankmy2 G A 12: 36,226,632 (GRCm39) V109M probably damaging Het
Anpep G A 7: 79,483,423 (GRCm39) A689V probably benign Het
Brwd1 A T 16: 95,859,938 (GRCm39) M350K probably damaging Het
Cacna1d C T 14: 29,818,917 (GRCm39) V1213I probably damaging Het
Capn1 A G 19: 6,061,451 (GRCm39) F156L possibly damaging Het
Catsperb C A 12: 101,476,721 (GRCm39) F408L probably damaging Het
Ccdc146 A T 5: 21,506,350 (GRCm39) L697Q possibly damaging Het
Cdc37l1 T A 19: 28,989,386 (GRCm39) V281E probably benign Het
Chia1 A T 3: 106,039,304 (GRCm39) T465S probably benign Het
Cidec A T 6: 113,405,282 (GRCm39) probably null Het
Clcnkb T C 4: 141,139,610 (GRCm39) T131A probably benign Het
Clec5a T A 6: 40,558,793 (GRCm39) M98L probably benign Het
Cnga1 A T 5: 72,768,201 (GRCm39) F162I probably benign Het
Cyp27b1 A T 10: 126,884,267 (GRCm39) I40F probably damaging Het
Edrf1 A G 7: 133,265,144 (GRCm39) S1027G probably benign Het
Entpd1 C A 19: 40,727,283 (GRCm39) A448E probably damaging Het
Espl1 T C 15: 102,205,286 (GRCm39) probably null Het
Etfdh T C 3: 79,511,422 (GRCm39) I520V probably damaging Het
Fchsd1 C T 18: 38,092,926 (GRCm39) probably benign Het
Gabra4 G A 5: 71,781,253 (GRCm39) P386L probably benign Het
Gckr G T 5: 31,463,922 (GRCm39) V281L probably damaging Het
Gfy T C 7: 44,827,167 (GRCm39) T310A probably benign Het
Gjc2 C A 11: 59,067,667 (GRCm39) V272L probably benign Het
Gm13441 G C 2: 31,777,511 (GRCm39) silent Het
H2-DMb2 T A 17: 34,367,582 (GRCm39) M1K probably null Het
Hipk3 T C 2: 104,302,153 (GRCm39) Y13C probably damaging Het
Kcnt1 A T 2: 25,784,536 (GRCm39) probably benign Het
Kcnt1 T C 2: 25,788,413 (GRCm39) F336S probably damaging Het
Klhdc7b A G 15: 89,271,359 (GRCm39) D747G probably benign Het
Krt78 T A 15: 101,857,030 (GRCm39) E359V probably damaging Het
Mast4 T C 13: 102,872,252 (GRCm39) D2195G probably benign Het
Matk C T 10: 81,096,753 (GRCm39) L188F probably damaging Het
Mcoln2 T C 3: 145,889,496 (GRCm39) I399T probably damaging Het
Mroh2a A G 1: 88,186,386 (GRCm39) S64G probably benign Het
Nap1l1 A T 10: 111,326,891 (GRCm39) K151* probably null Het
Ncbp3 T A 11: 72,964,327 (GRCm39) S426T probably benign Het
Nisch T A 14: 30,893,985 (GRCm39) probably null Het
Or4k15b T C 14: 50,272,306 (GRCm39) T185A probably benign Het
Or5b113 T C 19: 13,342,369 (GRCm39) C126R probably damaging Het
Or8a1b A G 9: 37,623,101 (GRCm39) I158T probably benign Het
Or8b8 A G 9: 37,809,174 (GRCm39) H158R probably damaging Het
Peg3 T C 7: 6,720,854 (GRCm39) D17G probably damaging Het
Pkd1 G A 17: 24,791,894 (GRCm39) V1194M probably benign Het
Pkd1l2 A T 8: 117,756,387 (GRCm39) I1615N probably damaging Het
Pkd2 A T 5: 104,625,045 (GRCm39) probably null Het
Pkp4 T A 2: 59,135,420 (GRCm39) N97K possibly damaging Het
Prrx2 C T 2: 30,769,522 (GRCm39) R78C probably damaging Het
Pycr1 T A 11: 120,532,988 (GRCm39) I91F probably damaging Het
Rap1a T C 3: 105,645,081 (GRCm39) N87S possibly damaging Het
Sbk2 T G 7: 4,960,627 (GRCm39) Y181S probably damaging Het
Scart1 T A 7: 139,808,712 (GRCm39) D874E probably damaging Het
Sec16a A T 2: 26,328,843 (GRCm39) H1057Q possibly damaging Het
Sfswap G A 5: 129,619,107 (GRCm39) E486K probably benign Het
Shank3 T C 15: 89,433,119 (GRCm39) V1213A probably damaging Het
Slfn5 T A 11: 82,848,102 (GRCm39) I329K probably benign Het
Slit1 T A 19: 41,594,813 (GRCm39) N1186Y probably damaging Het
Ssbp3 A G 4: 106,867,018 (GRCm39) probably benign Het
Steap3 T A 1: 120,171,731 (GRCm39) I125F probably damaging Het
Synpr C A 14: 13,608,788 (GRCm38) probably benign Het
Tom1 T C 8: 75,776,886 (GRCm39) L69P probably damaging Het
Traf3ip3 T A 1: 192,880,314 (GRCm39) D5V possibly damaging Het
Vmn1r29 G A 6: 58,284,736 (GRCm39) S152N probably benign Het
Vmn1r68 T C 7: 10,261,550 (GRCm39) I183V probably benign Het
Wdr17 C G 8: 55,092,503 (GRCm39) V1094L probably benign Het
Wdr95 A G 5: 149,487,692 (GRCm39) I109V possibly damaging Het
Zfp512 A T 5: 31,637,408 (GRCm39) Q443L probably damaging Het
Zfp974 T A 7: 27,610,230 (GRCm39) K498N possibly damaging Het
Other mutations in Zfp39
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00791:Zfp39 APN 11 58,783,885 (GRCm39) splice site probably benign
IGL01597:Zfp39 APN 11 58,782,369 (GRCm39) missense probably damaging 0.96
IGL02055:Zfp39 APN 11 58,782,156 (GRCm39) missense probably benign
IGL02456:Zfp39 APN 11 58,793,626 (GRCm39) nonsense probably null
IGL02873:Zfp39 APN 11 58,781,848 (GRCm39) missense probably benign 0.12
H8562:Zfp39 UTSW 11 58,791,512 (GRCm39) missense probably damaging 1.00
R0462:Zfp39 UTSW 11 58,781,232 (GRCm39) missense probably benign 0.03
R0513:Zfp39 UTSW 11 58,780,813 (GRCm39) missense probably benign 0.09
R1185:Zfp39 UTSW 11 58,793,670 (GRCm39) missense possibly damaging 0.91
R1185:Zfp39 UTSW 11 58,793,670 (GRCm39) missense possibly damaging 0.91
R1185:Zfp39 UTSW 11 58,793,670 (GRCm39) missense possibly damaging 0.91
R1401:Zfp39 UTSW 11 58,781,149 (GRCm39) missense probably benign 0.01
R1797:Zfp39 UTSW 11 58,791,486 (GRCm39) missense probably damaging 0.96
R2146:Zfp39 UTSW 11 58,781,158 (GRCm39) missense probably benign 0.05
R3903:Zfp39 UTSW 11 58,781,001 (GRCm39) missense probably benign 0.44
R4303:Zfp39 UTSW 11 58,780,843 (GRCm39) missense probably damaging 1.00
R4706:Zfp39 UTSW 11 58,793,633 (GRCm39) missense probably benign 0.41
R4957:Zfp39 UTSW 11 58,782,057 (GRCm39) missense possibly damaging 0.63
R5092:Zfp39 UTSW 11 58,782,028 (GRCm39) missense possibly damaging 0.71
R5158:Zfp39 UTSW 11 58,780,671 (GRCm39) missense possibly damaging 0.81
R5292:Zfp39 UTSW 11 58,791,415 (GRCm39) missense probably damaging 0.97
R5697:Zfp39 UTSW 11 58,780,661 (GRCm39) missense probably benign 0.08
R5925:Zfp39 UTSW 11 58,782,099 (GRCm39) missense possibly damaging 0.94
R6174:Zfp39 UTSW 11 58,782,213 (GRCm39) missense probably benign 0.01
R6177:Zfp39 UTSW 11 58,781,887 (GRCm39) missense probably benign 0.27
R6968:Zfp39 UTSW 11 58,782,306 (GRCm39) missense probably benign 0.00
R7045:Zfp39 UTSW 11 58,781,269 (GRCm39) missense unknown
R7139:Zfp39 UTSW 11 58,781,385 (GRCm39) missense probably damaging 1.00
R7421:Zfp39 UTSW 11 58,780,933 (GRCm39) missense probably damaging 1.00
R7493:Zfp39 UTSW 11 58,781,869 (GRCm39) missense possibly damaging 0.82
R7689:Zfp39 UTSW 11 58,781,469 (GRCm39) missense probably damaging 1.00
R8061:Zfp39 UTSW 11 58,793,573 (GRCm39) missense probably benign
R8136:Zfp39 UTSW 11 58,782,228 (GRCm39) missense probably damaging 0.99
R8955:Zfp39 UTSW 11 58,780,946 (GRCm39) nonsense probably null
Z1186:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Z1186:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1186:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1186:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1186:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1186:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1186:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1186:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1186:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1186:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1186:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1186:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1186:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1186:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1186:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1187:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1187:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1187:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1187:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1187:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1187:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1187:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1187:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1187:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1187:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1187:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1187:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1187:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1187:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1187:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Z1187:Zfp39 UTSW 11 58,781,712 (GRCm39) missense probably benign 0.01
Z1187:Zfp39 UTSW 11 58,781,702 (GRCm39) missense probably damaging 0.97
Z1188:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1188:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1188:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Z1188:Zfp39 UTSW 11 58,781,712 (GRCm39) missense probably benign 0.01
Z1188:Zfp39 UTSW 11 58,781,702 (GRCm39) missense probably damaging 0.97
Z1188:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1188:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1188:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1188:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1188:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1188:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1188:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1188:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1188:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1188:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1188:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1188:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1189:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1189:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1189:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1189:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1189:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1189:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1189:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1189:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1189:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1189:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1189:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1189:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1189:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1189:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1190:Zfp39 UTSW 11 58,781,702 (GRCm39) missense probably damaging 0.97
Z1190:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Z1190:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1190:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1190:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1190:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1190:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1190:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1190:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1190:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1190:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1190:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1190:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1190:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1190:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1190:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1191:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1191:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1191:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1191:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1191:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1191:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1191:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1191:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1191:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1191:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1191:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1191:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1191:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1191:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1191:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Z1191:Zfp39 UTSW 11 58,781,712 (GRCm39) missense probably benign 0.01
Z1191:Zfp39 UTSW 11 58,781,702 (GRCm39) missense probably damaging 0.97
Z1192:Zfp39 UTSW 11 58,781,605 (GRCm39) missense probably benign 0.09
Z1192:Zfp39 UTSW 11 58,781,597 (GRCm39) missense probably benign 0.00
Z1192:Zfp39 UTSW 11 58,781,526 (GRCm39) missense possibly damaging 0.50
Z1192:Zfp39 UTSW 11 58,781,274 (GRCm39) missense possibly damaging 0.86
Z1192:Zfp39 UTSW 11 58,781,273 (GRCm39) missense probably benign 0.16
Z1192:Zfp39 UTSW 11 58,781,130 (GRCm39) missense possibly damaging 0.91
Z1192:Zfp39 UTSW 11 58,780,873 (GRCm39) missense probably benign 0.01
Z1192:Zfp39 UTSW 11 58,780,871 (GRCm39) nonsense probably null
Z1192:Zfp39 UTSW 11 58,791,409 (GRCm39) missense probably benign 0.01
Z1192:Zfp39 UTSW 11 58,791,407 (GRCm39) missense probably benign 0.01
Z1192:Zfp39 UTSW 11 58,782,142 (GRCm39) missense probably benign
Z1192:Zfp39 UTSW 11 58,782,123 (GRCm39) missense probably benign
Z1192:Zfp39 UTSW 11 58,781,967 (GRCm39) missense probably damaging 0.99
Z1192:Zfp39 UTSW 11 58,781,751 (GRCm39) missense probably benign 0.29
Z1192:Zfp39 UTSW 11 58,781,724 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- ACAAGCACAATGTTGTATCTCTCC -3'
(R):5'- GCACTGCATTTGCCAAGAGC -3'

Sequencing Primer
(F):5'- ATCTAACTCAGGTCGTCAGGACTG -3'
(R):5'- GCACAAGATGACAGTGACTCCTTTG -3'
Posted On 2017-02-28