Mutagenetix > Incidental Mutation

Incidental Mutation 'R6866:Pramel32'

535909

Institutional Source

Beutler Lab

Gene Symbol

Pramel32

Ensembl Gene

ENSMUSG00000038330

Gene Name

PRAME like 32

Synonyms

C87499

MMRRC Submission

044965-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.394) question?

Stock #

R6866 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

88545557-88552423 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 88545977 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Valine at position 455 (D455V)

Ref Sequence

ENSEMBL: ENSMUSP00000056691 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053304] [ENSMUST00000107142] [ENSMUST00000107143] [ENSMUST00000134155] [ENSMUST00000156062]

AlphaFold

Q3UX49

Predicted Effect

probably damaging
Transcript: ENSMUST00000053304
AA Change: D455V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000056691
Gene: ENSMUSG00000038330
AA Change: D455V

Domain	Start	End	E-Value	Type
SCOP:d1a4ya_	223	425	4e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107142

Predicted Effect

probably benign
Transcript: ENSMUST00000107143

Predicted Effect

probably benign
Transcript: ENSMUST00000134155

Predicted Effect

probably benign
Transcript: ENSMUST00000156062

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.3%
20x: 97.7%

Validation Efficiency

Allele List at MGI

All alleles(3) : Targeted(2) Gene trapped(1)

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alms1	A	G	6: 85,598,080 (GRCm39)	T1438A	possibly damaging	Het
Als2	T	A	1: 59,250,292 (GRCm39)	Q484L	probably damaging	Het
Apeh	G	A	9: 107,969,878 (GRCm39)	H186Y	probably damaging	Het
Bcl2l13	T	A	6: 120,839,850 (GRCm39)	N49K	probably benign	Het
Bptf	T	C	11: 106,964,406 (GRCm39)	D1596G	probably damaging	Het
Brsk1	T	C	7: 4,709,406 (GRCm39)	M325T	probably damaging	Het
Caly	T	C	7: 139,650,532 (GRCm39)	M137V	probably benign	Het
Cdca2	T	C	14: 67,931,115 (GRCm39)	E526G	possibly damaging	Het
Cnga4	A	G	7: 105,056,952 (GRCm39)	S352G	possibly damaging	Het
Cntnap5c	A	C	17: 58,399,289 (GRCm39)	T381P	probably benign	Het
Cr2	T	A	1: 194,833,999 (GRCm39)	Y633F	probably damaging	Het
Cryba1	T	C	11: 77,610,355 (GRCm39)	N120S	probably benign	Het
Cyfip2	G	A	11: 46,133,286 (GRCm39)	R805*	probably null	Het
Dnah7c	C	A	1: 46,696,403 (GRCm39)	P2095Q	probably damaging	Het
Eif3k	T	C	7: 28,676,651 (GRCm39)	E110G	possibly damaging	Het
Extl2	T	A	3: 115,821,002 (GRCm39)	M283K	probably damaging	Het
Extl2	A	G	3: 115,821,001 (GRCm39)	M283V	probably damaging	Het
Focad	T	C	4: 88,321,623 (GRCm39)	I1658T	probably benign	Het
Fstl5	A	T	3: 76,229,532 (GRCm39)	H111L	probably damaging	Het
Garnl3	A	G	2: 32,892,785 (GRCm39)		probably null	Het
Gm3633	T	A	14: 42,462,579 (GRCm39)		probably benign	Het
Il4i1	T	A	7: 44,485,963 (GRCm39)		probably null	Het
Kcnj6	A	T	16: 94,563,536 (GRCm39)	C321S	probably damaging	Het
Kif20a	A	T	18: 34,761,546 (GRCm39)	Y313F	probably benign	Het
Kmt2d	T	G	15: 98,755,274 (GRCm39)		probably benign	Het
Kynu	T	A	2: 43,453,122 (GRCm39)	Y48*	probably null	Het
Ly9	T	C	1: 171,432,847 (GRCm39)	I55M	probably damaging	Het
Mgme1	T	C	2: 144,118,439 (GRCm39)	V237A	probably damaging	Het
Mmp16	T	A	4: 17,853,800 (GRCm39)	L27H	probably benign	Het
Mtres1	ACTGCACCACCT	ACT	10: 43,408,721 (GRCm39)		probably benign	Het
Myh1	A	C	11: 67,115,219 (GRCm39)	D1918A	probably damaging	Het
Myo5a	G	A	9: 75,047,970 (GRCm39)	C266Y	probably damaging	Het
Nckap5l	A	G	15: 99,324,349 (GRCm39)	I718T	probably benign	Het
Nptx1	A	G	11: 119,437,476 (GRCm39)		probably null	Het
Or56a42-ps1	T	A	7: 104,775,825 (GRCm39)	M228L	probably benign	Het
Or5k16	A	G	16: 58,736,351 (GRCm39)	Y218H	probably damaging	Het
Or5p76	A	G	7: 108,122,377 (GRCm39)	F260S	probably damaging	Het
Phc3	T	A	3: 30,968,680 (GRCm39)	K783*	probably null	Het
Pkdrej	A	T	15: 85,705,082 (GRCm39)	C285S	probably damaging	Het
Pot1b	T	A	17: 55,960,474 (GRCm39)	T619S	possibly damaging	Het
Psg21	A	T	7: 18,386,209 (GRCm39)	V259E	probably damaging	Het
Pvr	A	C	7: 19,652,555 (GRCm39)	I120S	probably benign	Het
Rbm17	T	G	2: 11,602,901 (GRCm39)	I68L	probably benign	Het
Rnf138	C	T	18: 21,135,199 (GRCm39)	P28L	probably damaging	Het
Rnf207	C	T	4: 152,396,989 (GRCm39)	C385Y	possibly damaging	Het
Serping1	A	C	2: 84,600,577 (GRCm39)	V255G	probably benign	Het
Slc25a3	A	T	10: 90,955,567 (GRCm39)	V91E	probably damaging	Het
Slc26a8	T	C	17: 28,857,455 (GRCm39)	D896G	probably benign	Het
Slc27a5	T	A	7: 12,731,443 (GRCm39)	T183S	probably benign	Het
Slc33a1	A	T	3: 63,850,744 (GRCm39)	F527I	probably benign	Het
Sting1	T	C	18: 35,872,482 (GRCm39)	H50R	probably damaging	Het
Strn4	A	T	7: 16,562,710 (GRCm39)	D283V	probably damaging	Het
Sult1e1	G	A	5: 87,734,625 (GRCm39)	T107I	probably damaging	Het
Tango6	G	A	8: 107,469,104 (GRCm39)		probably null	Het
Tecrl	G	T	5: 83,461,161 (GRCm39)	P99T	probably damaging	Het
Ticrr	T	C	7: 79,343,705 (GRCm39)	L1190P	possibly damaging	Het
Timm50	C	T	7: 28,005,370 (GRCm39)	R349H	probably damaging	Het
Tjp2	A	G	19: 24,079,355 (GRCm39)	I840T	probably damaging	Het
Tmem45a2	T	A	16: 56,867,386 (GRCm39)	N105I	probably damaging	Het
Tsbp1	T	A	17: 34,678,935 (GRCm39)	C216S	possibly damaging	Het
Zfp148	T	A	16: 33,288,496 (GRCm39)	C162S	probably damaging	Het
Zfp534	T	C	4: 147,758,938 (GRCm39)	K577R	probably benign	Het

Other mutations in Pramel32

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Pramel32	APN	4	88,547,307 (GRCm39)	missense	probably benign	0.43
IGL00229:Pramel32	APN	4	88,547,290 (GRCm39)	missense	probably damaging	0.99
IGL01938:Pramel32	APN	4	88,547,600 (GRCm39)	missense	possibly damaging	0.90
IGL02321:Pramel32	APN	4	88,548,340 (GRCm39)	missense	probably benign	0.33
IGL02351:Pramel32	APN	4	88,546,127 (GRCm39)	missense	probably damaging	1.00
IGL02358:Pramel32	APN	4	88,546,127 (GRCm39)	missense	probably damaging	1.00
P0005:Pramel32	UTSW	4	88,546,187 (GRCm39)	missense	probably damaging	1.00
R0521:Pramel32	UTSW	4	88,547,559 (GRCm39)	missense	probably damaging	0.96
R0578:Pramel32	UTSW	4	88,552,376 (GRCm39)	missense	probably benign	0.01
R0600:Pramel32	UTSW	4	88,547,536 (GRCm39)	missense	probably damaging	1.00
R0750:Pramel32	UTSW	4	88,545,905 (GRCm39)	missense	probably benign	0.01
R1483:Pramel32	UTSW	4	88,547,071 (GRCm39)	missense	probably damaging	1.00
R1502:Pramel32	UTSW	4	88,546,269 (GRCm39)	missense	probably benign	0.00
R1911:Pramel32	UTSW	4	88,548,309 (GRCm39)	missense	possibly damaging	0.93
R2204:Pramel32	UTSW	4	88,546,355 (GRCm39)	missense	probably damaging	0.99
R2507:Pramel32	UTSW	4	88,547,448 (GRCm39)	missense	possibly damaging	0.89
R2512:Pramel32	UTSW	4	88,547,195 (GRCm39)	missense	probably damaging	0.99
R4299:Pramel32	UTSW	4	88,546,419 (GRCm39)	missense	probably damaging	0.97
R4498:Pramel32	UTSW	4	88,547,129 (GRCm39)	splice site	probably null
R4656:Pramel32	UTSW	4	88,548,202 (GRCm39)	missense	probably benign	0.41
R4787:Pramel32	UTSW	4	88,547,450 (GRCm39)	nonsense	probably null
R4823:Pramel32	UTSW	4	88,547,452 (GRCm39)	missense	probably damaging	1.00
R4885:Pramel32	UTSW	4	88,546,219 (GRCm39)	missense	possibly damaging	0.50
R4948:Pramel32	UTSW	4	88,547,185 (GRCm39)	missense	probably damaging	1.00
R4967:Pramel32	UTSW	4	88,547,432 (GRCm39)	missense	probably damaging	1.00
R5229:Pramel32	UTSW	4	88,548,372 (GRCm39)	missense	possibly damaging	0.92
R5426:Pramel32	UTSW	4	88,547,647 (GRCm39)	intron	probably benign
R5520:Pramel32	UTSW	4	88,548,277 (GRCm39)	missense	probably damaging	1.00
R5574:Pramel32	UTSW	4	88,546,280 (GRCm39)	missense	probably benign	0.10
R5596:Pramel32	UTSW	4	88,548,292 (GRCm39)	missense	probably damaging	1.00
R6282:Pramel32	UTSW	4	88,548,291 (GRCm39)	missense	probably damaging	1.00
R6366:Pramel32	UTSW	4	88,547,102 (GRCm39)	missense	probably damaging	0.99
R6808:Pramel32	UTSW	4	88,548,291 (GRCm39)	missense	probably damaging	1.00
R7105:Pramel32	UTSW	4	88,548,339 (GRCm39)	missense	probably damaging	0.98
R7117:Pramel32	UTSW	4	88,547,195 (GRCm39)	missense	probably damaging	0.99
R7319:Pramel32	UTSW	4	88,548,184 (GRCm39)	missense	probably benign	0.25
R7345:Pramel32	UTSW	4	88,546,416 (GRCm39)	missense	possibly damaging	0.88
R7399:Pramel32	UTSW	4	88,546,202 (GRCm39)	missense	probably benign	0.01
R7626:Pramel32	UTSW	4	88,548,279 (GRCm39)	missense	probably damaging	1.00
R7751:Pramel32	UTSW	4	88,547,356 (GRCm39)	missense	probably benign	0.05
R8044:Pramel32	UTSW	4	88,548,212 (GRCm39)	missense	possibly damaging	0.47
R8849:Pramel32	UTSW	4	88,546,014 (GRCm39)	missense	probably benign	0.03
R9334:Pramel32	UTSW	4	88,548,186 (GRCm39)	missense	probably damaging	0.99
R9515:Pramel32	UTSW	4	88,546,219 (GRCm39)	missense	possibly damaging	0.50
RF012:Pramel32	UTSW	4	88,546,006 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- GCTCTAGGTCCCATTGATGAG -3'
(R):5'- TGCCTGCCTTAAGCCAATG -3'

Sequencing Primer
(F):5'- TCCAGAATGTCTCAGACCTTGGG -3'
(R):5'- CCACCTCACAAAGATCAATTTCTATG -3'

Posted On

2018-10-18