Incidental Mutation 'R7237:Armc9'
ID 562862
Institutional Source Beutler Lab
Gene Symbol Armc9
Ensembl Gene ENSMUSG00000062590
Gene Name armadillo repeat containing 9
Synonyms 4831423D23Rik, 4930438O05Rik, 5730415N24Rik, 3830422A13Rik
MMRRC Submission 045344-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.660) question?
Stock # R7237 (G1)
Quality Score 225.009
Status Validated
Chromosome 1
Chromosomal Location 86082502-86206006 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 86092571 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamine to Lysine at position 169 (Q169K)
Ref Sequence ENSEMBL: ENSMUSP00000108934 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027434] [ENSMUST00000113309] [ENSMUST00000131412] [ENSMUST00000186509]
AlphaFold Q9D2I5
Predicted Effect possibly damaging
Transcript: ENSMUST00000027434
AA Change: Q169K

PolyPhen 2 Score 0.820 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000027434
Gene: ENSMUSG00000062590
AA Change: Q169K

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 8e-14 SMART
low complexity region 793 807 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000113309
AA Change: Q169K

PolyPhen 2 Score 0.820 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000108934
Gene: ENSMUSG00000062590
AA Change: Q169K

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 8e-14 SMART
low complexity region 794 808 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000131412
AA Change: Q169K

PolyPhen 2 Score 0.820 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000117267
Gene: ENSMUSG00000062590
AA Change: Q169K

DomainStartEndE-ValueType
LisH 7 39 1.8e-4 SMART
low complexity region 175 190 N/A INTRINSIC
coiled coil region 206 242 N/A INTRINSIC
SCOP:d1jdha_ 377 575 4e-13 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000135197
Predicted Effect probably benign
Transcript: ENSMUST00000186509
SMART Domains Protein: ENSMUSP00000139539
Gene: ENSMUSG00000062590

DomainStartEndE-ValueType
LisH 7 39 5.3e-7 SMART
Meta Mutation Damage Score 0.1154 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency 98% (83/85)
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arhgap21 A T 2: 20,854,783 (GRCm39) C1536* probably null Het
Aspm T A 1: 139,405,667 (GRCm39) M1518K possibly damaging Het
AU018091 A G 7: 3,209,006 (GRCm39) I360T probably benign Het
BB014433 C A 8: 15,091,765 (GRCm39) V363L probably benign Het
Bcam T C 7: 19,503,232 (GRCm39) probably null Het
Cacna1g T C 11: 94,328,705 (GRCm39) S1071G probably benign Het
Card9 A T 2: 26,246,787 (GRCm39) S354T probably benign Het
Ccdc87 A G 19: 4,889,790 (GRCm39) N94S probably benign Het
Cdc27 A G 11: 104,408,245 (GRCm39) V555A probably benign Het
Coro1a T A 7: 126,299,478 (GRCm39) D411V probably benign Het
Cybrd1 GGTCCTGCAC G 2: 70,948,553 (GRCm39) probably benign Het
Cyth1 A T 11: 118,076,321 (GRCm39) I95N probably damaging Het
Dnah7b A T 1: 46,179,126 (GRCm39) E933V probably damaging Het
Dync2h1 A T 9: 6,993,966 (GRCm39) I3968N probably benign Het
Fam184a T C 10: 53,510,489 (GRCm39) probably benign Het
Fat3 G A 9: 16,288,510 (GRCm39) L338F probably damaging Het
Fcgr3 A G 1: 170,886,870 (GRCm39) L18P probably damaging Het
Gbp5 T C 3: 142,213,461 (GRCm39) V459A probably benign Het
Gja4 A T 4: 127,205,956 (GRCm39) M269K probably benign Het
Gm4787 A G 12: 81,424,442 (GRCm39) V572A probably damaging Het
Grin2d G T 7: 45,515,600 (GRCm39) S131* probably null Het
Gys1 A G 7: 45,104,586 (GRCm39) D671G probably benign Het
Haspin T C 11: 73,027,712 (GRCm39) N459S probably benign Het
Hdac10 G T 15: 89,009,580 (GRCm39) Q451K probably benign Het
Hdac9 T C 12: 34,424,139 (GRCm39) probably null Het
Hmcn1 A G 1: 150,598,394 (GRCm39) V1636A probably damaging Het
Hpca A G 4: 129,012,407 (GRCm39) L43P probably damaging Het
Hycc2 G A 1: 58,569,107 (GRCm39) Q491* probably null Het
Insm1 C A 2: 146,064,448 (GRCm39) A88E possibly damaging Het
Itga9 A G 9: 118,465,670 (GRCm39) K175E probably benign Het
Kif13a A G 13: 46,962,632 (GRCm39) probably null Het
Kif20b T A 19: 34,928,005 (GRCm39) L1089H probably damaging Het
Lamp5 A T 2: 135,901,755 (GRCm39) H152L probably benign Het
Lrp4 T C 2: 91,303,528 (GRCm39) F76L probably benign Het
Magi3 T C 3: 103,935,227 (GRCm39) D902G probably damaging Het
Map10 C T 8: 126,397,963 (GRCm39) P452L probably benign Het
Mapk6 A G 9: 75,304,895 (GRCm39) L174P probably damaging Het
Meak7 C T 8: 120,489,054 (GRCm39) G410S probably damaging Het
Ndufa4 C T 6: 11,906,018 (GRCm39) probably null Het
Nedd4 A T 9: 72,632,346 (GRCm39) E393D probably benign Het
Nlrp4b G A 7: 10,449,143 (GRCm39) V449I probably benign Het
Nufip2 T A 11: 77,583,596 (GRCm39) N503K probably benign Het
Or10ac1 T C 6: 42,515,581 (GRCm39) D125G probably damaging Het
Or6y1 C T 1: 174,276,905 (GRCm39) R239C probably benign Het
P4ha1 A G 10: 59,184,065 (GRCm39) T176A probably benign Het
Palm3 A G 8: 84,756,117 (GRCm39) K543R probably benign Het
Parvg G A 15: 84,225,557 (GRCm39) A302T probably benign Het
Pcdh15 A G 10: 74,420,023 (GRCm39) D1227G possibly damaging Het
Pdzd8 C T 19: 59,333,571 (GRCm39) G150D probably damaging Het
Pitpnm2 A G 5: 124,263,360 (GRCm39) probably null Het
Pld5 T C 1: 176,102,301 (GRCm39) Q47R possibly damaging Het
Ppp2r5d T C 17: 46,997,206 (GRCm39) S329G possibly damaging Het
Prss56 T C 1: 87,112,637 (GRCm39) V144A probably damaging Het
Psg28 A T 7: 18,161,769 (GRCm39) Y245N possibly damaging Het
Ptpn3 C T 4: 57,239,625 (GRCm39) V302I probably damaging Het
Ptprn2 A G 12: 117,125,347 (GRCm39) H627R probably benign Het
Rasgrp2 A T 19: 6,454,838 (GRCm39) H226L possibly damaging Het
Rbm20 C T 19: 53,839,930 (GRCm39) T973M probably benign Het
Rigi T A 4: 40,205,938 (GRCm39) I885F probably benign Het
Riok2 T A 17: 17,598,045 (GRCm39) L44Q probably damaging Het
Rusc1 G T 3: 88,998,805 (GRCm39) Q326K possibly damaging Het
Rxylt1 A T 10: 121,917,523 (GRCm39) L330* probably null Het
Sart3 A T 5: 113,892,307 (GRCm39) H397Q possibly damaging Het
Sec31b T A 19: 44,506,147 (GRCm39) T920S probably damaging Het
Serpinb13 A G 1: 106,926,679 (GRCm39) E225G probably damaging Het
Slc25a47 T C 12: 108,821,386 (GRCm39) L165P probably damaging Het
Slc2a10 G A 2: 165,357,197 (GRCm39) V286I probably benign Het
Slc39a13 G T 2: 90,895,979 (GRCm39) T174N probably benign Het
Slc7a13 T A 4: 19,839,364 (GRCm39) N322K probably benign Het
Stk38 T C 17: 29,193,620 (GRCm39) T326A possibly damaging Het
Sult1a1 T C 7: 126,272,622 (GRCm39) M244V probably benign Het
Tas2r144 C T 6: 42,192,800 (GRCm39) T180I probably damaging Het
Tbc1d12 T A 19: 38,887,346 (GRCm39) M366K probably benign Het
Terb1 T C 8: 105,221,959 (GRCm39) I147V possibly damaging Het
Tnik T C 3: 28,692,568 (GRCm39) Y820H probably damaging Het
Tnxb C A 17: 34,901,170 (GRCm39) L995I possibly damaging Het
Trim34b A G 7: 103,978,794 (GRCm39) T14A possibly damaging Het
Urb1 T C 16: 90,588,054 (GRCm39) E418G probably damaging Het
Vmn1r12 T A 6: 57,136,550 (GRCm39) C216S possibly damaging Het
Vmn2r90 T A 17: 17,924,249 (GRCm39) V16E possibly damaging Het
Vps11 A T 9: 44,265,803 (GRCm39) V492D probably damaging Het
Wdr62 A C 7: 29,969,869 (GRCm39) probably null Het
Zc3h14 T A 12: 98,746,408 (GRCm39) M539K probably benign Het
Zfp871 A T 17: 32,994,289 (GRCm39) H295Q probably damaging Het
Other mutations in Armc9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00468:Armc9 APN 1 86,126,061 (GRCm39) missense probably damaging 1.00
IGL00771:Armc9 APN 1 86,127,557 (GRCm39) splice site probably null
IGL01689:Armc9 APN 1 86,202,140 (GRCm39) missense probably benign
IGL02143:Armc9 APN 1 86,104,587 (GRCm39) missense possibly damaging 0.58
IGL02680:Armc9 APN 1 86,180,000 (GRCm39) missense probably damaging 1.00
IGL02812:Armc9 APN 1 86,172,293 (GRCm39) missense probably damaging 0.99
IGL02887:Armc9 APN 1 86,092,557 (GRCm39) missense probably damaging 1.00
IGL03011:Armc9 APN 1 86,127,638 (GRCm39) critical splice donor site probably null
IGL03309:Armc9 APN 1 86,202,155 (GRCm39) missense possibly damaging 0.54
R0184:Armc9 UTSW 1 86,126,092 (GRCm39) missense probably damaging 1.00
R0440:Armc9 UTSW 1 86,121,984 (GRCm39) splice site probably null
R0787:Armc9 UTSW 1 86,130,227 (GRCm39) missense probably damaging 0.99
R0849:Armc9 UTSW 1 86,184,992 (GRCm39) missense probably benign 0.00
R1687:Armc9 UTSW 1 86,084,677 (GRCm39) start codon destroyed probably null 1.00
R1962:Armc9 UTSW 1 86,135,696 (GRCm39) missense probably damaging 1.00
R2176:Armc9 UTSW 1 86,127,614 (GRCm39) missense probably damaging 1.00
R3418:Armc9 UTSW 1 86,122,060 (GRCm39) missense probably damaging 1.00
R3419:Armc9 UTSW 1 86,122,060 (GRCm39) missense probably damaging 1.00
R4079:Armc9 UTSW 1 86,140,851 (GRCm39) intron probably benign
R4112:Armc9 UTSW 1 86,116,661 (GRCm39) missense possibly damaging 0.80
R4151:Armc9 UTSW 1 86,092,497 (GRCm39) missense probably damaging 1.00
R4675:Armc9 UTSW 1 86,130,240 (GRCm39) missense probably damaging 1.00
R4934:Armc9 UTSW 1 86,140,801 (GRCm39) missense probably damaging 1.00
R4944:Armc9 UTSW 1 86,202,256 (GRCm39) missense probably damaging 0.98
R5069:Armc9 UTSW 1 86,184,959 (GRCm39) missense probably benign 0.03
R5070:Armc9 UTSW 1 86,184,959 (GRCm39) missense probably benign 0.03
R5071:Armc9 UTSW 1 86,113,838 (GRCm39) missense probably benign 0.01
R5238:Armc9 UTSW 1 86,127,569 (GRCm39) missense probably benign 0.01
R5386:Armc9 UTSW 1 86,126,011 (GRCm39) missense probably null 1.00
R5459:Armc9 UTSW 1 86,135,694 (GRCm39) missense probably damaging 0.97
R6027:Armc9 UTSW 1 86,172,389 (GRCm39) missense probably damaging 1.00
R6144:Armc9 UTSW 1 86,172,301 (GRCm39) missense probably benign 0.06
R7111:Armc9 UTSW 1 86,087,717 (GRCm39) missense probably damaging 1.00
R7304:Armc9 UTSW 1 86,090,437 (GRCm39) missense probably benign
R7452:Armc9 UTSW 1 86,140,814 (GRCm39) missense possibly damaging 0.87
R7555:Armc9 UTSW 1 86,203,400 (GRCm39) missense probably damaging 1.00
R7805:Armc9 UTSW 1 86,124,041 (GRCm39) missense probably damaging 1.00
R8490:Armc9 UTSW 1 86,202,125 (GRCm39) missense probably benign 0.00
R8513:Armc9 UTSW 1 86,090,405 (GRCm39) missense probably damaging 1.00
R9378:Armc9 UTSW 1 86,189,766 (GRCm39) missense probably benign
R9439:Armc9 UTSW 1 86,084,687 (GRCm39) missense possibly damaging 0.46
Z1177:Armc9 UTSW 1 86,124,077 (GRCm39) missense probably benign 0.00
Z1177:Armc9 UTSW 1 86,104,547 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- ACGTCTTTCTTCTTCTAGGACAAAC -3'
(R):5'- TACAACCACAGCTAGTACAAGATTG -3'

Sequencing Primer
(F):5'- CTTCTTCTAGGACAAACAAGAGCTAG -3'
(R):5'- AGTACACTGTAGCTGTCTTCAGAC -3'
Posted On 2019-06-26