Mutagenetix > Incidental Mutation

Incidental Mutation 'R7582:Arfgap3'

586827

Institutional Source

Beutler Lab

Gene Symbol

Arfgap3

Ensembl Gene

ENSMUSG00000054277

Gene Name

ADP-ribosylation factor GTPase activating protein 3

Synonyms

1810035F16Rik, 1810004P07Rik, 9130416J18Rik, 0610009H19Rik

MMRRC Submission

045665-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.269) question?

Stock #

R7582 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

83183940-83234448 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 83187302 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glycine at position 72 (V72G)

Ref Sequence

ENSEMBL: ENSMUSP00000154365 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067215] [ENSMUST00000226124] [ENSMUST00000226764]

AlphaFold

Q9D8S3

Predicted Effect

probably null
Transcript: ENSMUST00000067215

SMART Domains

Protein: ENSMUSP00000064893
Gene: ENSMUSG00000054277

Domain	Start	End	E-Value	Type
ArfGap	10	126	7.18e-44	SMART
Blast:ArfGap	160	200	2e-6	BLAST
low complexity region	220	237	N/A	INTRINSIC
low complexity region	348	362	N/A	INTRINSIC
low complexity region	459	466	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000226124

Predicted Effect

possibly damaging
Transcript: ENSMUST00000226764
AA Change: V72G

PolyPhen 2 Score 0.766 (Sensitivity: 0.85; Specificity: 0.92)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a GTPase-activating protein (GAP) that associates with the Golgi apparatus and regulates the early secretory pathway of proteins. The encoded protein promotes hydrolysis of ADP-ribosylation factor 1 (ARF1)-bound GTP, which is required for the dissociation of coat proteins from Golgi-derived membranes and vesicles. Dissociation of the coat proteins is a prerequisite for the fusion of these vesicles with target compartments. The activity of this protein is sensitive to phospholipids. Multiple transcript variants encoding different isoforms have been found for this gene. This gene was originally known as ARFGAP1, but that is now the name of a related but different gene. [provided by RefSeq, Nov 2008]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgb	A	G	10: 10,266,565 (GRCm39)	V1007A	probably damaging	Het
Adgrl3	T	C	5: 81,841,523 (GRCm39)	V800A	probably damaging	Het
Ankfn1	T	A	11: 89,417,445 (GRCm39)	M56L	probably benign	Het
B3galnt2	C	T	13: 14,165,986 (GRCm39)	R294W	probably damaging	Het
Cadm1	G	T	9: 47,708,740 (GRCm39)	D157Y	probably damaging	Het
Castor1	T	C	11: 4,170,457 (GRCm39)	V151A	probably benign	Het
Ccdc81	A	T	7: 89,525,353 (GRCm39)	Y474N	probably damaging	Het
Cdkl4	T	A	17: 80,841,264 (GRCm39)	K297I	probably benign	Het
Cep128	G	A	12: 91,314,340 (GRCm39)	T146M	probably damaging	Het
Cfap161	T	C	7: 83,426,290 (GRCm39)	N236S	possibly damaging	Het
Chil3	A	T	3: 106,071,572 (GRCm39)	W31R	probably damaging	Het
Cmtm2b	C	T	8: 105,049,353 (GRCm39)	S86F	probably damaging	Het
Cntnap5a	G	A	1: 116,374,362 (GRCm39)	G958D	probably damaging	Het
Col6a5	A	G	9: 105,822,625 (GRCm39)	L244P	unknown	Het
Crat	C	T	2: 30,294,577 (GRCm39)	R497Q	probably benign	Het
Cul9	A	G	17: 46,821,905 (GRCm39)	Y1857H	probably damaging	Het
Dst	A	G	1: 34,208,964 (GRCm39)	Q1154R	probably damaging	Het
Fgg	G	A	3: 82,921,445 (GRCm39)	G376D	probably damaging	Het
Fmn2	T	C	1: 174,526,356 (GRCm39)	S1392P	probably damaging	Het
Focad	T	C	4: 88,147,615 (GRCm39)	V418A	probably benign	Het
Foxf1	A	T	8: 121,811,430 (GRCm39)	H98L	possibly damaging	Het
Frmd4a	C	CA	2: 4,599,408 (GRCm39)		probably null	Het
Fry	C	A	5: 150,419,847 (GRCm39)	T639K		Het
Fryl	A	G	5: 73,179,843 (GRCm39)		probably null	Het
Gdpd4	A	G	7: 97,607,012 (GRCm39)		probably null	Het
Gpt2	A	G	8: 86,246,145 (GRCm39)	K368R	probably damaging	Het
Hc	A	T	2: 34,881,278 (GRCm39)	V1447E	possibly damaging	Het
Kmt5a	A	G	5: 124,597,982 (GRCm39)	T280A	probably benign	Het
Lrrc4b	G	T	7: 44,111,234 (GRCm39)	V369L	probably benign	Het
Ly6g5c	A	G	17: 35,330,783 (GRCm39)	M102V	probably benign	Het
Malrd1	A	G	2: 15,700,081 (GRCm39)	S643G	unknown	Het
Mib2	T	C	4: 155,739,267 (GRCm39)	N904S	probably benign	Het
Mug2	G	A	6: 122,056,603 (GRCm39)	V1183I	probably damaging	Het
Nckap1l	C	T	15: 103,390,587 (GRCm39)	T786I	probably damaging	Het
Neb	T	C	2: 52,224,504 (GRCm39)		probably benign	Het
Neu3	A	G	7: 99,463,174 (GRCm39)	V183A	probably benign	Het
Nod1	A	G	6: 54,921,292 (GRCm39)	L342P	probably damaging	Het
Nop58	T	C	1: 59,740,097 (GRCm39)	V163A	probably damaging	Het
Npr3	C	T	15: 11,895,768 (GRCm39)	G293R	probably null	Het
Obscn	T	A	11: 58,952,253 (GRCm39)	K3939*	probably null	Het
Or4d10c	G	A	19: 12,065,370 (GRCm39)	A262V	probably benign	Het
Or4g16	T	A	2: 111,136,793 (GRCm39)	M81K	probably damaging	Het
Or5k16	A	T	16: 58,736,410 (GRCm39)	M198K	possibly damaging	Het
Or5p76	A	G	7: 108,123,058 (GRCm39)	I33T	probably benign	Het
Or8b12b	T	C	9: 37,684,117 (GRCm39)	L54P	probably damaging	Het
P2ry6	A	G	7: 100,587,784 (GRCm39)	Y192H	probably damaging	Het
Paxbp1	A	G	16: 90,819,555 (GRCm39)		probably null	Het
Pign	G	A	1: 105,577,092 (GRCm39)	T197I	probably benign	Het
Pirb	A	T	7: 3,716,817 (GRCm39)		probably null	Het
Pkdrej	C	A	15: 85,703,122 (GRCm39)	R938L	possibly damaging	Het
Psg21	A	G	7: 18,381,128 (GRCm39)	*472R	probably null	Het
Rabgap1l	A	T	1: 160,509,654 (GRCm39)	S474R	probably benign	Het
Rrn3	C	T	16: 13,628,375 (GRCm39)	Q519*	probably null	Het
Seh1l	A	T	18: 67,908,188 (GRCm39)	K37*	probably null	Het
Shprh	A	G	10: 11,040,449 (GRCm39)	S641G	probably benign	Het
Slc4a1	T	G	11: 102,243,403 (GRCm39)	S743R	probably damaging	Het
Snx13	C	T	12: 35,174,534 (GRCm39)	R688*	probably null	Het
Tlr11	C	T	14: 50,599,186 (GRCm39)	Q391*	probably null	Het
Tmbim4	A	G	10: 120,053,471 (GRCm39)	H90R	probably benign	Het
Trav8d-1	T	C	14: 53,016,326 (GRCm39)	S71P	possibly damaging	Het
Trbv5	G	A	6: 41,039,617 (GRCm39)	R74Q	probably benign	Het
Tril	A	G	6: 53,795,921 (GRCm39)	S434P	probably benign	Het
Uhmk1	A	G	1: 170,027,570 (GRCm39)	Y376H	probably damaging	Het
Uty	A	G	Y: 1,170,914 (GRCm39)	C317R	probably damaging	Het
Vmp1	C	T	11: 86,476,225 (GRCm39)	C377Y	probably benign	Het
Vwa8	A	C	14: 79,219,674 (GRCm39)		probably null	Het
Wdr41	T	C	13: 95,142,275 (GRCm39)	S150P	probably damaging	Het
Zfp617	T	A	8: 72,685,864 (GRCm39)	Y65N	probably benign	Het
Zfp800	A	C	6: 28,244,089 (GRCm39)	V292G	probably damaging	Het

Other mutations in Arfgap3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00908:Arfgap3	APN	15	83,206,790 (GRCm39)	missense	probably benign	0.04
IGL01306:Arfgap3	APN	15	83,197,710 (GRCm39)	missense	possibly damaging	0.78
IGL01960:Arfgap3	APN	15	83,197,758 (GRCm39)	missense	probably benign	0.04
IGL03029:Arfgap3	APN	15	83,206,851 (GRCm39)	missense	probably damaging	1.00
IGL03036:Arfgap3	APN	15	83,191,127 (GRCm39)	missense	possibly damaging	0.91
IGL03328:Arfgap3	APN	15	83,227,282 (GRCm39)	missense	probably damaging	1.00
ANU23:Arfgap3	UTSW	15	83,197,710 (GRCm39)	missense	possibly damaging	0.78
R0103:Arfgap3	UTSW	15	83,206,922 (GRCm39)	splice site	probably benign
R0103:Arfgap3	UTSW	15	83,206,922 (GRCm39)	splice site	probably benign
R0125:Arfgap3	UTSW	15	83,227,340 (GRCm39)	missense	probably benign	0.01
R0243:Arfgap3	UTSW	15	83,214,714 (GRCm39)	splice site	probably benign
R0551:Arfgap3	UTSW	15	83,227,338 (GRCm39)	missense	probably damaging	1.00
R0557:Arfgap3	UTSW	15	83,187,386 (GRCm39)	missense	probably damaging	1.00
R0638:Arfgap3	UTSW	15	83,192,389 (GRCm39)	splice site	probably null
R1115:Arfgap3	UTSW	15	83,214,741 (GRCm39)	missense	probably benign	0.00
R1459:Arfgap3	UTSW	15	83,191,138 (GRCm39)	missense	probably benign	0.15
R1576:Arfgap3	UTSW	15	83,197,764 (GRCm39)	missense	possibly damaging	0.94
R1776:Arfgap3	UTSW	15	83,227,340 (GRCm39)	missense	probably benign	0.01
R1826:Arfgap3	UTSW	15	83,187,303 (GRCm39)	critical splice donor site	probably null
R2057:Arfgap3	UTSW	15	83,194,501 (GRCm39)	missense	probably benign
R2084:Arfgap3	UTSW	15	83,218,767 (GRCm39)	missense	probably damaging	0.96
R3407:Arfgap3	UTSW	15	83,206,808 (GRCm39)	missense	probably benign	0.00
R4072:Arfgap3	UTSW	15	83,187,330 (GRCm39)	missense	probably damaging	1.00
R4074:Arfgap3	UTSW	15	83,187,330 (GRCm39)	missense	probably damaging	1.00
R4206:Arfgap3	UTSW	15	83,206,869 (GRCm39)	missense	probably benign
R4449:Arfgap3	UTSW	15	83,218,759 (GRCm39)	missense	probably damaging	1.00
R5004:Arfgap3	UTSW	15	83,194,497 (GRCm39)	missense	possibly damaging	0.87
R5193:Arfgap3	UTSW	15	83,216,898 (GRCm39)	missense	probably benign	0.01
R5364:Arfgap3	UTSW	15	83,198,562 (GRCm39)	missense	probably damaging	1.00
R6142:Arfgap3	UTSW	15	83,234,328 (GRCm39)	missense	probably damaging	1.00
R6813:Arfgap3	UTSW	15	83,214,794 (GRCm39)	missense	probably benign	0.00
R7154:Arfgap3	UTSW	15	83,220,905 (GRCm39)	missense	probably damaging	1.00
R7422:Arfgap3	UTSW	15	83,191,150 (GRCm39)	missense	probably damaging	0.97
R7714:Arfgap3	UTSW	15	83,192,352 (GRCm39)	missense	probably benign	0.34
R8269:Arfgap3	UTSW	15	83,194,542 (GRCm39)	missense	probably benign	0.01
R9352:Arfgap3	UTSW	15	83,191,127 (GRCm39)	missense	possibly damaging	0.82
R9712:Arfgap3	UTSW	15	83,197,734 (GRCm39)	missense	probably benign	0.02
R9729:Arfgap3	UTSW	15	83,192,366 (GRCm39)	missense	probably damaging	1.00
Z1177:Arfgap3	UTSW	15	83,216,889 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ATACGAACTCCAGTAGGAACTTAG -3'
(R):5'- ACATGTCCTTAGAAGAGGGGC -3'

Sequencing Primer
(F):5'- TCTACAGAGTGAGTTCCAGGAC -3'
(R):5'- AGGGGCAAGCTGACATCTTTC -3'

Posted On

2019-10-24