Mutagenetix > Incidental Mutation

Incidental Mutation 'R7869:Repin1'

607969

Institutional Source

Beutler Lab

Gene Symbol

Repin1

Ensembl Gene

ENSMUSG00000052751

Gene Name

replication initiator 1

Synonyms

Zfp464, AP4, E430037F08Rik

MMRRC Submission

045921-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7869 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

48570817-48576016 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to T at 48574279 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 403 (E403*)

Ref Sequence

ENSEMBL: ENSMUSP00000118890 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000009420] [ENSMUST00000118229] [ENSMUST00000135151] [ENSMUST00000154010] [ENSMUST00000163452] [ENSMUST00000204095] [ENSMUST00000204121] [ENSMUST00000204521]

AlphaFold

Q5U4E2

Predicted Effect

probably null
Transcript: ENSMUST00000009420
AA Change: E347*

SMART Domains

Protein: ENSMUSP00000009420
Gene: ENSMUSG00000052751
AA Change: E347*

Domain	Start	End	E-Value	Type
ZnF_C2H2	52	72	3.47e1	SMART
ZnF_C2H2	80	102	5.81e-2	SMART
ZnF_C2H2	111	133	5.5e-3	SMART
ZnF_C2H2	140	160	1.16e1	SMART
ZnF_C2H2	172	194	3.89e-3	SMART
low complexity region	196	224	N/A	INTRINSIC
ZnF_C2H2	229	251	1.67e-2	SMART
ZnF_C2H2	257	279	4.94e-5	SMART
ZnF_C2H2	285	307	5.21e-4	SMART
ZnF_C2H2	353	375	4.72e-2	SMART
ZnF_C2H2	381	403	1.26e-2	SMART
ZnF_C2H2	409	431	1.79e-2	SMART
ZnF_C2H2	437	459	4.24e-4	SMART
ZnF_C2H2	465	487	6.52e-5	SMART
ZnF_C2H2	493	515	2.61e-4	SMART
ZnF_C2H2	521	543	1.45e-2	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000118229
AA Change: E400*

SMART Domains

Protein: ENSMUSP00000113548
Gene: ENSMUSG00000052751
AA Change: E400*

Domain	Start	End	E-Value	Type
ZnF_C2H2	52	72	3.47e1	SMART
ZnF_C2H2	80	102	5.81e-2	SMART
ZnF_C2H2	111	133	5.5e-3	SMART
ZnF_C2H2	140	160	1.16e1	SMART
ZnF_C2H2	172	194	3.89e-3	SMART
low complexity region	196	224	N/A	INTRINSIC
ZnF_C2H2	229	251	1.67e-2	SMART
ZnF_C2H2	257	279	4.94e-5	SMART
ZnF_C2H2	285	307	5.21e-4	SMART
ZnF_C2H2	353	375	4.72e-2	SMART
ZnF_C2H2	381	403	1.26e-2	SMART
ZnF_C2H2	409	431	1.79e-2	SMART
ZnF_C2H2	437	459	4.24e-4	SMART
ZnF_C2H2	465	487	6.52e-5	SMART
ZnF_C2H2	493	515	2.61e-4	SMART
ZnF_C2H2	521	543	1.45e-2	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000135151
AA Change: E403*

SMART Domains

Protein: ENSMUSP00000118890
Gene: ENSMUSG00000052751
AA Change: E403*

Domain	Start	End	E-Value	Type
ZnF_C2H2	52	72	3.47e1	SMART
ZnF_C2H2	80	102	5.81e-2	SMART
ZnF_C2H2	111	133	5.5e-3	SMART
ZnF_C2H2	140	160	1.16e1	SMART
ZnF_C2H2	172	194	3.89e-3	SMART
low complexity region	196	224	N/A	INTRINSIC
ZnF_C2H2	229	251	1.67e-2	SMART
ZnF_C2H2	257	279	4.94e-5	SMART
Pfam:zf-C2H2_6	284	300	1.4e-1	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000154010
AA Change: E347*

SMART Domains

Protein: ENSMUSP00000121975
Gene: ENSMUSG00000052751
AA Change: E347*

Domain	Start	End	E-Value	Type
ZnF_C2H2	52	72	3.47e1	SMART
ZnF_C2H2	80	102	5.81e-2	SMART
ZnF_C2H2	111	133	5.5e-3	SMART
ZnF_C2H2	140	160	1.16e1	SMART
ZnF_C2H2	172	194	3.89e-3	SMART
low complexity region	196	224	N/A	INTRINSIC
ZnF_C2H2	229	251	1.67e-2	SMART
ZnF_C2H2	257	279	4.94e-5	SMART
ZnF_C2H2	285	307	5.21e-4	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000163452
AA Change: E347*

SMART Domains

Protein: ENSMUSP00000132365
Gene: ENSMUSG00000052751
AA Change: E347*

Domain	Start	End	E-Value	Type
ZnF_C2H2	52	72	3.47e1	SMART
ZnF_C2H2	80	102	5.81e-2	SMART
ZnF_C2H2	111	133	5.5e-3	SMART
ZnF_C2H2	140	160	1.16e1	SMART
ZnF_C2H2	172	194	3.89e-3	SMART
low complexity region	196	224	N/A	INTRINSIC
ZnF_C2H2	229	251	1.67e-2	SMART
ZnF_C2H2	257	279	4.94e-5	SMART
ZnF_C2H2	285	307	5.21e-4	SMART
ZnF_C2H2	353	375	4.72e-2	SMART
ZnF_C2H2	381	403	1.26e-2	SMART
ZnF_C2H2	409	431	1.79e-2	SMART
ZnF_C2H2	437	459	4.24e-4	SMART
ZnF_C2H2	465	487	6.52e-5	SMART
ZnF_C2H2	493	515	2.61e-4	SMART
ZnF_C2H2	521	543	1.45e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000204095

SMART Domains

Protein: ENSMUSP00000145192
Gene: ENSMUSG00000007216

Domain	Start	End	E-Value	Type
low complexity region	86	102	N/A	INTRINSIC
ZnF_C2H2	104	126	7.9e-4	SMART
ZnF_C2H2	132	154	1.69e-3	SMART
ZnF_C2H2	160	182	2.36e-2	SMART
ZnF_C2H2	188	210	4.11e-2	SMART
ZnF_C2H2	279	301	1.84e-4	SMART
ZnF_C2H2	307	329	4.94e-5	SMART
ZnF_C2H2	335	357	2.95e-3	SMART
ZnF_C2H2	364	386	1.36e-2	SMART
ZnF_C2H2	446	468	1.3e-4	SMART
ZnF_C2H2	474	496	2.12e-4	SMART
ZnF_C2H2	502	524	5.5e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000204121

Predicted Effect

probably benign
Transcript: ENSMUST00000204521

Meta Mutation Damage Score

0.9647

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele improves in insulin sensitivity and glucose metabolism in Lepr^db homozygotes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	G	A	5: 113,332,001 (GRCm39)	R738C	possibly damaging	Het
Acot12	G	A	13: 91,919,844 (GRCm39)	V260M	probably benign	Het
Alkbh8	A	T	9: 3,359,503 (GRCm39)	H264L	probably damaging	Het
Arfgef2	C	T	2: 166,715,623 (GRCm39)	T1356I	probably damaging	Het
Arhgap27	A	T	11: 103,251,130 (GRCm39)	N199K	probably damaging	Het
Asic2	T	C	11: 81,858,824 (GRCm39)	R63G	probably damaging	Het
Aspa	T	A	11: 73,204,378 (GRCm39)	M197L	probably benign	Het
BC005537	C	T	13: 24,987,382 (GRCm39)	R7W	possibly damaging	Het
Brdt	A	T	5: 107,518,045 (GRCm39)	I723L	probably benign	Het
C2cd3	T	A	7: 100,118,698 (GRCm39)	F2312Y	probably damaging	Het
Cd19	T	C	7: 126,009,698 (GRCm39)	N456S	probably damaging	Het
Ceacam1	G	T	7: 25,175,954 (GRCm39)	A80E	probably damaging	Het
Cep135	T	C	5: 76,788,803 (GRCm39)	V1132A	probably benign	Het
Cep85	A	G	4: 133,859,609 (GRCm39)	C687R	probably damaging	Het
Cln5	A	G	14: 103,313,501 (GRCm39)	Y251C	probably damaging	Het
Crygc	A	G	1: 65,111,014 (GRCm39)	M91T	possibly damaging	Het
Ddt	T	C	10: 75,609,060 (GRCm39)	K33R	probably damaging	Het
Dhfr	G	A	13: 92,494,471 (GRCm39)	W58*	probably null	Het
Dhx40	T	C	11: 86,688,532 (GRCm39)	E297G	probably benign	Het
Dner	T	C	1: 84,361,602 (GRCm39)	Y669C	probably benign	Het
Dpys	G	T	15: 39,656,782 (GRCm39)	F428L	probably damaging	Het
Dspp	A	C	5: 104,323,531 (GRCm39)	T225P	probably damaging	Het
Elac2	A	G	11: 64,890,213 (GRCm39)	K656E	probably damaging	Het
Ern1	T	A	11: 106,349,845 (GRCm39)	R24*	probably null	Het
F2rl2	T	C	13: 95,837,519 (GRCm39)	I188T	probably damaging	Het
Fam83b	C	T	9: 76,399,426 (GRCm39)	C559Y	possibly damaging	Het
Fat1	T	G	8: 45,504,259 (GRCm39)	F4584C	probably benign	Het
Gabra6	G	A	11: 42,207,322 (GRCm39)	T254I	possibly damaging	Het
Garem1	T	C	18: 21,432,757 (GRCm39)	D24G	probably damaging	Het
Gas2l2	A	T	11: 83,312,816 (GRCm39)	L832*	probably null	Het
Gpr68	C	T	12: 100,845,497 (GRCm39)	D16N	probably benign	Het
Il17b	T	C	18: 61,825,480 (GRCm39)	I172T	probably damaging	Het
Ildr2	T	G	1: 166,136,861 (GRCm39)	S567A	probably benign	Het
Kalrn	A	G	16: 33,809,217 (GRCm39)	V2557A	probably damaging	Het
Kif1b	A	G	4: 149,268,833 (GRCm39)	S1627P	probably benign	Het
Kif5a	G	A	10: 127,079,343 (GRCm39)	T285M	probably damaging	Het
Lrif1	G	A	3: 106,640,459 (GRCm39)		probably null	Het
Lrrn2	C	T	1: 132,867,116 (GRCm39)	T727I	unknown	Het
Lsg1	T	C	16: 30,383,540 (GRCm39)	E560G	probably benign	Het
Map4k4	C	A	1: 40,013,204 (GRCm39)	Q100K	unknown	Het
Mipep	A	T	14: 61,040,385 (GRCm39)	R302W	probably damaging	Het
Morf4l1	G	T	9: 89,975,844 (GRCm39)	T316K	probably damaging	Het
Mov10	A	T	3: 104,711,994 (GRCm39)	V126E	probably damaging	Het
Muc2	T	A	7: 141,303,471 (GRCm39)	C559S		Het
Myh7	A	G	14: 55,226,530 (GRCm39)	Y410H	probably damaging	Het
Nf1	T	A	11: 79,309,414 (GRCm39)	Y433N	probably damaging	Het
Nmd3	T	C	3: 69,633,750 (GRCm39)	L79P	probably damaging	Het
Nol10	G	T	12: 17,408,239 (GRCm39)	S155I	probably null	Het
Or2n1	T	C	17: 38,486,830 (GRCm39)	L285P	possibly damaging	Het
Or4p8	T	C	2: 88,727,408 (GRCm39)	I178V	probably benign	Het
Or52n2c	T	A	7: 104,574,311 (GRCm39)	Y220F	probably damaging	Het
Or5b12	A	G	19: 12,896,911 (GRCm39)	I254T	probably benign	Het
Pde3b	T	C	7: 114,093,922 (GRCm39)	S389P	probably benign	Het
Polr1c	C	T	17: 46,555,817 (GRCm39)	G188D	probably benign	Het
Prpf31	A	G	7: 3,633,859 (GRCm39)	M65V	probably benign	Het
Pum2	A	G	12: 8,763,595 (GRCm39)	T251A	probably benign	Het
Rabgap1	G	A	2: 37,377,142 (GRCm39)	V325I	probably benign	Het
Rpl15	G	T	14: 18,269,017 (GRCm38)	Y203*	probably null	Het
Sac3d1	G	A	19: 6,168,456 (GRCm39)	P54L	possibly damaging	Het
Serpina3g	A	G	12: 104,206,510 (GRCm39)	I104V	probably benign	Het
Setd2	C	T	9: 110,379,082 (GRCm39)	Q966*	probably null	Het
Simc1	G	T	13: 54,651,713 (GRCm39)	D9Y	unknown	Het
Slc5a8	T	C	10: 88,757,567 (GRCm39)	L519S	probably benign	Het
Srcap	C	A	7: 127,138,366 (GRCm39)	Q1179K	possibly damaging	Het
Srd5a3	T	C	5: 76,295,583 (GRCm39)	L91P	probably damaging	Het
Stab1	T	C	14: 30,876,429 (GRCm39)	T887A	probably benign	Het
Sult2a6	A	G	7: 13,988,737 (GRCm39)	F8L	not run	Het
Thsd7a	A	T	6: 12,471,123 (GRCm39)	C498*	probably null	Het
Timp4	T	C	6: 115,227,355 (GRCm39)	I75V	probably benign	Het
Tspyl4	T	A	10: 34,174,096 (GRCm39)	M196K	probably damaging	Het
Ubr2	T	C	17: 47,301,934 (GRCm39)	E172G	probably benign	Het
Ubr5	G	A	15: 37,980,076 (GRCm39)	A2434V	probably null	Het
Unc13c	T	G	9: 73,602,159 (GRCm39)	L1362F	probably damaging	Het
Vmn2r11	A	G	5: 109,199,986 (GRCm39)	V489A	probably damaging	Het
Vps39	T	C	2: 120,169,875 (GRCm39)	T226A	possibly damaging	Het
Zan	C	T	5: 137,471,863 (GRCm39)	E185K	probably damaging	Het

Other mutations in Repin1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01100:Repin1	APN	6	48,573,839 (GRCm39)	missense	probably damaging	1.00
IGL01103:Repin1	APN	6	48,574,887 (GRCm39)	intron	probably benign
IGL02027:Repin1	APN	6	48,573,407 (GRCm39)	missense	probably damaging	1.00
IGL02143:Repin1	APN	6	48,574,055 (GRCm39)	missense	probably damaging	1.00
R0395:Repin1	UTSW	6	48,574,459 (GRCm39)	missense	probably damaging	1.00
R1233:Repin1	UTSW	6	48,574,768 (GRCm39)	missense	possibly damaging	0.72
R1743:Repin1	UTSW	6	48,574,684 (GRCm39)	missense	probably damaging	0.96
R2259:Repin1	UTSW	6	48,573,464 (GRCm39)	missense	probably benign	0.00
R4509:Repin1	UTSW	6	48,573,460 (GRCm39)	missense	possibly damaging	0.77
R5008:Repin1	UTSW	6	48,573,542 (GRCm39)	missense	probably damaging	1.00
R5009:Repin1	UTSW	6	48,571,779 (GRCm39)	intron	probably benign
R5425:Repin1	UTSW	6	48,573,365 (GRCm39)	missense	probably benign	0.18
R5829:Repin1	UTSW	6	48,571,766 (GRCm39)	intron	probably benign
R6350:Repin1	UTSW	6	48,574,562 (GRCm39)	missense	probably damaging	0.98
R6841:Repin1	UTSW	6	48,574,859 (GRCm39)	missense	possibly damaging	0.95
R6854:Repin1	UTSW	6	48,570,825 (GRCm39)	intron	probably benign
R7067:Repin1	UTSW	6	48,574,850 (GRCm39)	nonsense	probably null
R7636:Repin1	UTSW	6	48,573,299 (GRCm39)	missense	probably benign	0.00
R7699:Repin1	UTSW	6	48,574,756 (GRCm39)	missense	probably damaging	0.96
R7700:Repin1	UTSW	6	48,574,756 (GRCm39)	missense	probably damaging	0.96
R7747:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7748:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7781:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7815:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7820:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7988:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R7991:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8078:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8079:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8080:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8088:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8089:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8130:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8131:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8324:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8325:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8342:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8411:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8488:Repin1	UTSW	6	48,570,952 (GRCm39)	missense	probably damaging	0.98
R8542:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8543:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8544:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8697:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8699:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8701:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8702:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8731:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8732:Repin1	UTSW	6	48,574,279 (GRCm39)	nonsense	probably null
R8780:Repin1	UTSW	6	48,574,073 (GRCm39)	missense	probably damaging	0.99
R8879:Repin1	UTSW	6	48,574,367 (GRCm39)	missense	possibly damaging	0.73
R9049:Repin1	UTSW	6	48,574,646 (GRCm39)	missense	possibly damaging	0.86
R9465:Repin1	UTSW	6	48,571,877 (GRCm39)	missense	probably benign	0.18

Predicted Primers

PCR Primer
(F):5'- GCATACATACCGGCGAGAAG -3'
(R):5'- CACATAGGGTTTCTCGCCTGTG -3'

Sequencing Primer
(F):5'- TACCCATGCACCGAGTGTGG -3'
(R):5'- TGGCTGCCCTGTGAGAAAC -3'

Posted On

2019-12-20