Incidental Mutation 'R8155:Abcb6'
| ID |
633235 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Abcb6
|
| Ensembl Gene |
ENSMUSG00000026198 |
| Gene Name |
ATP-binding cassette, sub-family B member 6 |
| Synonyms |
1200005B17Rik |
| MMRRC Submission |
067581-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.308)
|
| Stock # |
R8155 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
75148361-75157036 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 75151413 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Glutamic Acid
at position 504
(V504E)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000027396
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000027394]
[ENSMUST00000027396]
[ENSMUST00000160439]
[ENSMUST00000161215]
[ENSMUST00000162768]
|
| AlphaFold |
Q9DC29 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000027394
|
| SMART Domains |
Protein: ENSMUSP00000027394
Gene: ENSMUSG00000026197
| Domain | Start | End | E-Value | Type |
|---|
|
ZnF_AN1
|
10 |
49 |
2e-4 |
SMART |
|
low complexity region
|
54 |
66 |
N/A |
INTRINSIC |
|
ZnF_AN1
|
100 |
139 |
6.69e-3 |
SMART |
|
low complexity region
|
155 |
179 |
N/A |
INTRINSIC |
|
UIM
|
197 |
216 |
1.3e-2 |
SMART |
|
UIM
|
221 |
240 |
1.26e0 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000027396
AA Change: V504E
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000027396
Gene: ENSMUSG00000026198
AA Change: V504E
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:MTABC_N
|
6 |
255 |
7.8e-80 |
PFAM |
|
Pfam:ABC_membrane
|
265 |
544 |
3.7e-34 |
PFAM |
|
AAA
|
615 |
816 |
1.29e-19 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000160439
|
| SMART Domains |
Protein: ENSMUSP00000125086
Gene: ENSMUSG00000026197
| Domain | Start | End | E-Value | Type |
|---|
|
ZnF_AN1
|
10 |
49 |
2e-4 |
SMART |
|
low complexity region
|
54 |
66 |
N/A |
INTRINSIC |
|
ZnF_AN1
|
100 |
139 |
6.69e-3 |
SMART |
|
low complexity region
|
155 |
179 |
N/A |
INTRINSIC |
|
UIM
|
197 |
216 |
1.3e-2 |
SMART |
|
UIM
|
221 |
240 |
1.26e0 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000161215
|
| SMART Domains |
Protein: ENSMUSP00000124630
Gene: ENSMUSG00000026198
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1jj7a_
|
5 |
78 |
8e-23 |
SMART |
|
Blast:AAA
|
23 |
71 |
9e-25 |
BLAST |
|
PDB:3NHB|A
|
23 |
94 |
3e-36 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162768
|
| SMART Domains |
Protein: ENSMUSP00000124552
Gene: ENSMUSG00000026197
| Domain | Start | End | E-Value | Type |
|---|
|
ZnF_AN1
|
10 |
49 |
2e-4 |
SMART |
|
low complexity region
|
54 |
66 |
N/A |
INTRINSIC |
|
ZnF_AN1
|
100 |
139 |
6.69e-3 |
SMART |
|
low complexity region
|
155 |
179 |
N/A |
INTRINSIC |
|
UIM
|
197 |
216 |
1.3e-2 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000186227
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.8%
- 10x: 99.5%
- 20x: 98.9%
|
| Validation Efficiency |
100% (62/62) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance as well as antigen presentation. This half-transporter likely plays a role in mitochondrial function. Localized to 2q26, this gene is considered a candidate gene for lethal neonatal metabolic syndrome, a disorder of mitochondrial function. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null mutation display partial lethality, impaired stress erythropoiesis, and absence of ATP-dependent transport of Coproporphyrin III in mitochondria. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(2) : Targeted, other(2)
|
| Other mutations in this stock |
Total: 62 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca12 |
G |
A |
1: 71,330,497 (GRCm39) |
T1386I |
probably damaging |
Het |
| Abtb3 |
G |
A |
10: 85,476,473 (GRCm39) |
|
probably null |
Het |
| Adprhl1 |
C |
T |
8: 13,271,764 (GRCm39) |
A1665T |
probably damaging |
Het |
| Arhgap32 |
T |
A |
9: 32,093,196 (GRCm39) |
L183H |
probably damaging |
Het |
| Arhgef12 |
A |
G |
9: 42,953,958 (GRCm39) |
L24S |
probably damaging |
Het |
| B3gnt4 |
C |
T |
5: 123,649,426 (GRCm39) |
H264Y |
possibly damaging |
Het |
| Cfi |
A |
G |
3: 129,648,739 (GRCm39) |
T208A |
probably benign |
Het |
| Chd4 |
T |
A |
6: 125,082,287 (GRCm39) |
F605Y |
probably benign |
Het |
| Cimap1d |
A |
T |
10: 79,481,466 (GRCm39) |
V21E |
probably benign |
Het |
| Clip1 |
A |
G |
5: 123,751,699 (GRCm39) |
L694P |
|
Het |
| Crybb3 |
A |
T |
5: 113,225,466 (GRCm39) |
D135E |
probably damaging |
Het |
| Ddx60 |
T |
A |
8: 62,470,205 (GRCm39) |
S1398T |
possibly damaging |
Het |
| Dusp5 |
T |
A |
19: 53,529,537 (GRCm39) |
Y313* |
probably null |
Het |
| Eloa |
A |
G |
4: 135,734,438 (GRCm39) |
V689A |
probably benign |
Het |
| Ep300 |
T |
A |
15: 81,505,269 (GRCm39) |
Y630N |
unknown |
Het |
| Galnt5 |
A |
T |
2: 57,889,427 (GRCm39) |
K342N |
probably benign |
Het |
| Gm4841 |
A |
G |
18: 60,403,409 (GRCm39) |
V228A |
probably damaging |
Het |
| Gna14 |
A |
T |
19: 16,576,338 (GRCm39) |
D115V |
probably benign |
Het |
| Gpx5 |
T |
C |
13: 21,472,917 (GRCm39) |
D139G |
probably damaging |
Het |
| Hmcn1 |
G |
T |
1: 150,480,705 (GRCm39) |
N4490K |
probably damaging |
Het |
| Hsp90aa1 |
T |
C |
12: 110,661,828 (GRCm39) |
S63G |
unknown |
Het |
| Itpkb |
T |
C |
1: 180,159,913 (GRCm39) |
I13T |
possibly damaging |
Het |
| Itprid2 |
T |
C |
2: 79,475,177 (GRCm39) |
S379P |
probably benign |
Het |
| Lamb2 |
C |
T |
9: 108,357,845 (GRCm39) |
R123W |
probably damaging |
Het |
| Ldha |
A |
G |
7: 46,503,508 (GRCm39) |
H300R |
probably damaging |
Het |
| Lrp2 |
A |
G |
2: 69,313,342 (GRCm39) |
L2463P |
possibly damaging |
Het |
| Morf4l1 |
A |
G |
9: 89,977,225 (GRCm39) |
I232T |
probably damaging |
Het |
| Mtg1 |
A |
G |
7: 139,724,622 (GRCm39) |
H166R |
probably benign |
Het |
| Or14a260 |
A |
G |
7: 85,985,386 (GRCm39) |
S73P |
probably damaging |
Het |
| Or2ad1 |
A |
G |
13: 21,327,062 (GRCm39) |
L55P |
probably damaging |
Het |
| Or52r1 |
C |
T |
7: 102,536,452 (GRCm39) |
D303N |
probably benign |
Het |
| Or5d46 |
A |
G |
2: 88,170,296 (GRCm39) |
N129S |
probably damaging |
Het |
| Or6d12 |
T |
A |
6: 116,492,813 (GRCm39) |
V25E |
probably benign |
Het |
| Or7g32 |
A |
T |
9: 19,389,453 (GRCm39) |
V31D |
probably benign |
Het |
| Papss2 |
A |
G |
19: 32,618,742 (GRCm39) |
T267A |
probably benign |
Het |
| Park7 |
G |
A |
4: 150,991,547 (GRCm39) |
R48C |
possibly damaging |
Het |
| Pecr |
A |
G |
1: 72,309,443 (GRCm39) |
V199A |
probably damaging |
Het |
| Pla2g10 |
G |
A |
16: 13,543,048 (GRCm39) |
R80W |
probably damaging |
Het |
| Plek2 |
G |
A |
12: 78,943,066 (GRCm39) |
R77* |
probably null |
Het |
| Psg23 |
A |
G |
7: 18,346,179 (GRCm39) |
L172P |
probably damaging |
Het |
| Psg25 |
A |
C |
7: 18,260,445 (GRCm39) |
F151C |
probably benign |
Het |
| Ptpn3 |
G |
T |
4: 57,232,336 (GRCm39) |
H433Q |
probably benign |
Het |
| Rasal3 |
A |
G |
17: 32,616,381 (GRCm39) |
V294A |
possibly damaging |
Het |
| Rnf6 |
T |
C |
5: 146,147,815 (GRCm39) |
D401G |
probably damaging |
Het |
| Rsf1 |
GCG |
GCGACG |
7: 97,229,114 (GRCm39) |
|
probably benign |
Het |
| Sema3d |
T |
C |
5: 12,498,148 (GRCm39) |
|
probably null |
Het |
| Serpinb1c |
A |
T |
13: 33,081,038 (GRCm39) |
L15Q |
probably damaging |
Het |
| Slfn3 |
T |
A |
11: 83,103,611 (GRCm39) |
Y161N |
probably damaging |
Het |
| Spns2 |
T |
C |
11: 72,347,394 (GRCm39) |
M404V |
possibly damaging |
Het |
| Stk39 |
T |
A |
2: 68,097,410 (GRCm39) |
I479L |
probably damaging |
Het |
| Tbx15 |
C |
A |
3: 99,259,886 (GRCm39) |
Q586K |
possibly damaging |
Het |
| Thap11 |
C |
T |
8: 106,582,854 (GRCm39) |
R288* |
probably null |
Het |
| Tm7sf2 |
T |
A |
19: 6,114,125 (GRCm39) |
D236V |
probably damaging |
Het |
| Tmem214 |
T |
C |
5: 31,029,136 (GRCm39) |
S192P |
possibly damaging |
Het |
| Tnfaip3 |
A |
G |
10: 18,880,439 (GRCm39) |
S543P |
possibly damaging |
Het |
| Traf3ip3 |
A |
G |
1: 192,860,524 (GRCm39) |
L466P |
probably damaging |
Het |
| Tspan18 |
C |
T |
2: 93,040,357 (GRCm39) |
|
probably null |
Het |
| Vmn1r229 |
T |
A |
17: 21,035,472 (GRCm39) |
L239Q |
probably damaging |
Het |
| Vsig2 |
T |
C |
9: 37,455,329 (GRCm39) |
V293A |
possibly damaging |
Het |
| Wdfy4 |
A |
T |
14: 32,884,776 (GRCm39) |
V42D |
|
Het |
| Wnk2 |
G |
A |
13: 49,192,577 (GRCm39) |
P2055S |
unknown |
Het |
| Zfp953 |
C |
A |
13: 67,491,535 (GRCm39) |
C139F |
probably damaging |
Het |
|
| Other mutations in Abcb6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02836:Abcb6
|
APN |
1 |
75,154,646 (GRCm39) |
missense |
probably damaging |
0.96 |
|
1mM(1):Abcb6
|
UTSW |
1 |
75,148,755 (GRCm39) |
unclassified |
probably benign |
|
|
R0035:Abcb6
|
UTSW |
1 |
75,151,651 (GRCm39) |
missense |
possibly damaging |
0.74 |
|
R0699:Abcb6
|
UTSW |
1 |
75,148,553 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1470:Abcb6
|
UTSW |
1 |
75,149,323 (GRCm39) |
unclassified |
probably benign |
|
|
R1595:Abcb6
|
UTSW |
1 |
75,153,944 (GRCm39) |
splice site |
probably null |
|
|
R1912:Abcb6
|
UTSW |
1 |
75,156,599 (GRCm39) |
missense |
probably benign |
|
|
R2078:Abcb6
|
UTSW |
1 |
75,148,780 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3105:Abcb6
|
UTSW |
1 |
75,151,687 (GRCm39) |
unclassified |
probably benign |
|
|
R4015:Abcb6
|
UTSW |
1 |
75,151,135 (GRCm39) |
splice site |
probably null |
|
|
R4604:Abcb6
|
UTSW |
1 |
75,156,521 (GRCm39) |
missense |
probably benign |
|
|
R4633:Abcb6
|
UTSW |
1 |
75,154,426 (GRCm39) |
unclassified |
probably benign |
|
|
R4748:Abcb6
|
UTSW |
1 |
75,154,002 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5530:Abcb6
|
UTSW |
1 |
75,154,556 (GRCm39) |
unclassified |
probably benign |
|
|
R5654:Abcb6
|
UTSW |
1 |
75,151,479 (GRCm39) |
splice site |
probably null |
|
|
R5841:Abcb6
|
UTSW |
1 |
75,150,994 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R6275:Abcb6
|
UTSW |
1 |
75,149,195 (GRCm39) |
splice site |
probably null |
|
|
R6527:Abcb6
|
UTSW |
1 |
75,154,132 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7188:Abcb6
|
UTSW |
1 |
75,150,781 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7278:Abcb6
|
UTSW |
1 |
75,151,017 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R7451:Abcb6
|
UTSW |
1 |
75,148,797 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7481:Abcb6
|
UTSW |
1 |
75,150,248 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7608:Abcb6
|
UTSW |
1 |
75,154,347 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7640:Abcb6
|
UTSW |
1 |
75,151,489 (GRCm39) |
splice site |
probably null |
|
|
R7883:Abcb6
|
UTSW |
1 |
75,154,660 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R7982:Abcb6
|
UTSW |
1 |
75,150,284 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8057:Abcb6
|
UTSW |
1 |
75,151,002 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8058:Abcb6
|
UTSW |
1 |
75,156,653 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R8309:Abcb6
|
UTSW |
1 |
75,149,588 (GRCm39) |
missense |
probably benign |
0.43 |
|
R9087:Abcb6
|
UTSW |
1 |
75,150,211 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9599:Abcb6
|
UTSW |
1 |
75,151,372 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R9723:Abcb6
|
UTSW |
1 |
75,156,366 (GRCm39) |
missense |
probably benign |
|
|
X0009:Abcb6
|
UTSW |
1 |
75,151,197 (GRCm39) |
missense |
probably benign |
0.35 |
|
Z1177:Abcb6
|
UTSW |
1 |
75,152,769 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACCCAGAGAAGCAAGTATGTC -3'
(R):5'- TCGTGGGAGCTGTCATTACC -3'
Sequencing Primer
(F):5'- ACAGAAAGCCTGCAGGTTCTCTG -3'
(R):5'- GAGCTGTCATTACCACGCC -3'
|
| Posted On |
2020-06-30 |
Incidental Mutation