Mutagenetix > Incidental Mutation

Incidental Mutation 'R8309:Pcgf2'

641281

Institutional Source

Beutler Lab

Gene Symbol

Pcgf2

Ensembl Gene

ENSMUSG00000018537

Gene Name

polycomb group ring finger 2

Synonyms

mel-18, Mel18, Zfp144, Rnf110

MMRRC Submission

067794-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R8309 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

97579649-97591323 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 97582569 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 173 (T173A)

Ref Sequence

ENSEMBL: ENSMUSP00000018681 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000018681] [ENSMUST00000103148] [ENSMUST00000103149] [ENSMUST00000107583] [ENSMUST00000107584] [ENSMUST00000107585] [ENSMUST00000169807] [ENSMUST00000179765]

AlphaFold

P23798

Predicted Effect

probably benign
Transcript: ENSMUST00000018681
AA Change: T173A

PolyPhen 2 Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000018681
Gene: ENSMUSG00000018537
AA Change: T173A

Domain	Start	End	E-Value	Type
RING	18	56	4.99e-5	SMART
low complexity region	263	318	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000103148
AA Change: T173A

PolyPhen 2 Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000099437
Gene: ENSMUSG00000018537
AA Change: T173A

Domain	Start	End	E-Value	Type
RING	18	56	4.99e-5	SMART
low complexity region	263	318	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000103149

SMART Domains

Protein: ENSMUSP00000099438
Gene: ENSMUSG00000018537

Domain	Start	End	E-Value	Type
low complexity region	79	134	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107583

SMART Domains

Protein: ENSMUSP00000103209
Gene: ENSMUSG00000078695

Domain	Start	End	E-Value	Type
ZnF_CDGSH	54	88	3.39e-9	SMART
ZnF_CDGSH	92	129	5.55e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107584

SMART Domains

Protein: ENSMUSP00000103210
Gene: ENSMUSG00000078695

Domain	Start	End	E-Value	Type
ZnF_CDGSH	32	66	3.39e-9	SMART
ZnF_CDGSH	70	107	5.55e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107585

SMART Domains

Protein: ENSMUSP00000103211
Gene: ENSMUSG00000078695

Domain	Start	End	E-Value	Type
low complexity region	18	29	N/A	INTRINSIC
ZnF_CDGSH	51	85	3.39e-9	SMART
ZnF_CDGSH	89	126	5.55e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000169807
AA Change: T173A

PolyPhen 2 Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000126967
Gene: ENSMUSG00000018537
AA Change: T173A

Domain	Start	End	E-Value	Type
RING	18	56	4.99e-5	SMART
Pfam:RAWUL	146	228	1.9e-26	PFAM
low complexity region	263	318	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000179765
AA Change: T173A

PolyPhen 2 Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000137517
Gene: ENSMUSG00000018537
AA Change: T173A

Domain	Start	End	E-Value	Type
RING	18	56	4.99e-5	SMART
low complexity region	263	318	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (82/82)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING finger motif and is similar to the polycomb group (PcG) gene products. PcG gene products form complexes via protein-protein interaction and maintain the transcription repression of genes involved in embryogenesis, cell cycles, and tumorigenesis. This protein was shown to act as a negative regulator of transcription and has tumor suppressor activity. The expression of this gene was detected in various tumor cells, but is limited in neural organs in normal tissues. Knockout studies in mice suggested that this protein may negatively regulate the expression of different cytokines, chemokines, and chemokine receptors, and thus plays an important role in lymphocyte differentiation and migration, as well as in immune responses. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants exhibit multiple abnormalities of the axial skeleton (including homeotic transformations), grow markedly slower, and die either perinatally or between 3-6 weeks of age depending on genetic background. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930402F06Rik	T	A	2: 35,279,599 (GRCm39)	Y34F	possibly damaging	Het
Abcb6	A	T	1: 75,149,588 (GRCm39)	S664T	probably benign	Het
Abcc4	C	T	14: 118,853,804 (GRCm39)	V443M	probably damaging	Het
Abhd2	G	A	7: 78,998,095 (GRCm39)	G209D	probably damaging	Het
Acte1	A	G	7: 143,437,680 (GRCm39)	N126S	possibly damaging	Het
Ampd2	C	A	3: 107,987,432 (GRCm39)	V134L	probably benign	Het
Apbb2	T	A	5: 66,520,179 (GRCm39)	M449L	probably benign	Het
Ccdc81	T	A	7: 89,526,786 (GRCm39)		probably null	Het
Cd209b	A	T	8: 3,976,559 (GRCm39)	C42*	probably null	Het
Cdhr18	G	A	14: 13,814,954 (GRCm38)	Q860*	probably null	Het
Clec18a	A	T	8: 111,808,689 (GRCm39)	M11K	probably benign	Het
Clock	A	T	5: 76,402,269 (GRCm39)	S130R	probably benign	Het
Col12a1	G	A	9: 79,512,465 (GRCm39)	A2910V	possibly damaging	Het
Col6a4	C	T	9: 105,952,414 (GRCm39)	A495T	probably benign	Het
Cyp4f37	A	T	17: 32,853,952 (GRCm39)	N467I	probably damaging	Het
Ddo	G	A	10: 40,513,375 (GRCm39)	V106M	possibly damaging	Het
Dennd5a	A	G	7: 109,500,332 (GRCm39)	L931P	probably damaging	Het
Dgcr6	A	G	16: 17,884,598 (GRCm39)	D82G	probably damaging	Het
Dnah7b	T	C	1: 46,179,032 (GRCm39)	S902P	probably damaging	Het
Dnal4	T	G	15: 79,646,711 (GRCm39)	I57L	probably benign	Het
Dst	T	A	1: 34,156,592 (GRCm39)	I174N	probably damaging	Het
Dync2i1	T	C	12: 116,219,705 (GRCm39)	E79G	probably damaging	Het
Dync2i2	A	G	2: 29,922,201 (GRCm39)	L420P	probably damaging	Het
Eeig2	G	A	3: 108,934,658 (GRCm39)		probably benign	Het
Efhb	T	C	17: 53,756,563 (GRCm39)	T363A	probably damaging	Het
Ehbp1l1	A	G	19: 5,767,103 (GRCm39)	F1245S	probably damaging	Het
Eif4g1	A	G	16: 20,507,578 (GRCm39)	D1453G	probably benign	Het
Fbp1	T	C	13: 63,016,831 (GRCm39)	I224V	probably benign	Het
Gm10782	T	G	13: 56,510,948 (GRCm39)	F79V	noncoding transcript	Het
Gpaa1	C	G	15: 76,216,160 (GRCm39)	R47G	possibly damaging	Het
Hs2st1	G	A	3: 144,143,365 (GRCm39)	S226L	possibly damaging	Het
Hydin	A	G	8: 111,334,534 (GRCm39)	Y4992C	probably benign	Het
Ikbke	A	T	1: 131,191,065 (GRCm39)	C549*	probably null	Het
Insrr	G	A	3: 87,717,749 (GRCm39)	G817S	probably benign	Het
Itgb5	G	A	16: 33,685,923 (GRCm39)	V88I	probably benign	Het
Krt78	A	G	15: 101,854,922 (GRCm39)	V963A	probably benign	Het
Lars1	T	C	18: 42,376,093 (GRCm39)	Y239C	possibly damaging	Het
Map2k5	A	G	9: 63,246,361 (GRCm39)		probably null	Het
Mfn2	A	T	4: 147,974,693 (GRCm39)	W118R	probably benign	Het
Mga	T	A	2: 119,791,411 (GRCm39)	I2550N	probably damaging	Het
Mgam	A	G	6: 40,722,111 (GRCm39)	I401V	possibly damaging	Het
Mrps18c	A	G	5: 100,952,264 (GRCm39)	Y141C	probably damaging	Het
Myo1e	A	T	9: 70,254,045 (GRCm39)	I565L	possibly damaging	Het
Nfatc4	G	A	14: 56,063,848 (GRCm39)	E112K	probably damaging	Het
Nubp1	A	G	16: 10,239,486 (GRCm39)	M255V	probably benign	Het
Or13n4	A	C	7: 106,423,620 (GRCm39)	S38A	probably benign	Het
Or52a33	A	G	7: 103,288,658 (GRCm39)	S230P	probably damaging	Het
Or8g33	C	T	9: 39,337,966 (GRCm39)	V134I	probably benign	Het
Pask	A	T	1: 93,240,573 (GRCm39)	C1264*	probably null	Het
Plcg1	T	C	2: 160,595,853 (GRCm39)	I574T	probably benign	Het
Plin4	T	C	17: 56,411,437 (GRCm39)	T865A	probably damaging	Het
Pnpt1	T	C	11: 29,103,277 (GRCm39)	V514A	probably benign	Het
Ppp1r3a	T	A	6: 14,719,700 (GRCm39)	I405F	probably benign	Het
Qpctl	A	G	7: 18,882,398 (GRCm39)	V86A	probably benign	Het
Rab3gap1	G	T	1: 127,837,655 (GRCm39)	W239L	possibly damaging	Het
Ralgapa2	T	A	2: 146,246,786 (GRCm39)	T939S	possibly damaging	Het
Rapgef2	G	T	3: 78,990,509 (GRCm39)	T923N	possibly damaging	Het
Rit2	T	A	18: 31,286,898 (GRCm39)	I96F	probably damaging	Het
Rnase13	A	T	14: 52,159,893 (GRCm39)	I82N	probably damaging	Het
Rp1	C	A	1: 4,417,312 (GRCm39)	V1267L	probably benign	Het
Serpinb9b	G	A	13: 33,223,554 (GRCm39)	E249K	probably damaging	Het
Serpinb9c	G	T	13: 33,334,094 (GRCm39)	T344K	possibly damaging	Het
Serpinh1	T	C	7: 98,998,151 (GRCm39)	I160V	possibly damaging	Het
Sipa1	A	G	19: 5,704,964 (GRCm39)	S544P	probably damaging	Het
Slc17a5	A	T	9: 78,478,311 (GRCm39)	Y231*	probably null	Het
Srcap	T	C	7: 127,148,529 (GRCm39)	V1959A	probably damaging	Het
Srrm4	G	A	5: 116,729,626 (GRCm39)		probably benign	Het
Stat1	T	C	1: 52,190,404 (GRCm39)	I553T	possibly damaging	Het
Stpg1	A	G	4: 135,256,903 (GRCm39)	I231M	probably benign	Het
Szt2	G	GC	4: 118,232,679 (GRCm39)		probably null	Het
Trpv3	C	T	11: 73,170,747 (GRCm39)	T209M	probably damaging	Het
Tsc22d2	G	T	3: 58,324,544 (GRCm39)	G479C	unknown	Het
Ttc3	A	G	16: 94,267,838 (GRCm39)	H1950R	probably damaging	Het
Tusc3	A	G	8: 39,617,882 (GRCm39)	*348W	probably null	Het
Utp4	A	T	8: 107,642,853 (GRCm39)	T504S	probably benign	Het
Vmn1r15	A	G	6: 57,235,635 (GRCm39)	M168V	probably benign	Het
Wdsub1	C	T	2: 59,704,578 (GRCm39)		probably benign	Het
Xrcc5	T	A	1: 72,358,286 (GRCm39)	M207K	possibly damaging	Het
Zc3h7a	A	T	16: 10,964,417 (GRCm39)		probably benign	Het
Zdbf2	T	A	1: 63,345,750 (GRCm39)	N1376K	possibly damaging	Het
Zfp558	A	C	9: 18,368,213 (GRCm39)	S192A	probably benign	Het
Zfp764l1	C	T	7: 126,992,496 (GRCm39)	C38Y	probably null	Het
Zfp964	A	G	8: 70,115,924 (GRCm39)	T175A	possibly damaging	Het
Zfp988	A	G	4: 147,416,765 (GRCm39)	R400G	probably damaging	Het

Other mutations in Pcgf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01348:Pcgf2	APN	11	97,581,066 (GRCm39)	missense	probably benign	0.01
IGL01877:Pcgf2	APN	11	97,583,359 (GRCm39)	missense	probably damaging	1.00
IGL02473:Pcgf2	APN	11	97,582,747 (GRCm39)	splice site	probably benign
R0243:Pcgf2	UTSW	11	97,583,244 (GRCm39)	splice site	probably null
R0522:Pcgf2	UTSW	11	97,582,873 (GRCm39)	missense	probably benign	0.31
R0712:Pcgf2	UTSW	11	97,581,830 (GRCm39)	missense	probably damaging	1.00
R0781:Pcgf2	UTSW	11	97,582,676 (GRCm39)	splice site	probably benign
R1110:Pcgf2	UTSW	11	97,582,676 (GRCm39)	splice site	probably benign
R4295:Pcgf2	UTSW	11	97,584,282 (GRCm39)	nonsense	probably null
R4959:Pcgf2	UTSW	11	97,582,515 (GRCm39)	missense	possibly damaging	0.85
R5569:Pcgf2	UTSW	11	97,583,193 (GRCm39)	critical splice donor site	probably null
R5622:Pcgf2	UTSW	11	97,581,078 (GRCm39)	missense	probably damaging	1.00
R5779:Pcgf2	UTSW	11	97,581,117 (GRCm39)	missense	probably damaging	1.00
R6001:Pcgf2	UTSW	11	97,583,606 (GRCm39)	missense	possibly damaging	0.91
R6090:Pcgf2	UTSW	11	97,581,817 (GRCm39)	missense	possibly damaging	0.71
R6360:Pcgf2	UTSW	11	97,583,235 (GRCm39)	splice site	probably null
R8228:Pcgf2	UTSW	11	97,582,865 (GRCm39)	missense	probably benign	0.00
Z1176:Pcgf2	UTSW	11	97,580,847 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAGGCCCTCTGTACACCAAC -3'
(R):5'- ATTTGGCCCAACAACTCCATAG -3'

Sequencing Primer
(F):5'- TAGGCCCTCTGTACACCAACTAAAAC -3'
(R):5'- TCTCTTCTTCCAGGGACCGAGAG -3'

Posted On

2020-07-28