Mutagenetix > Incidental Mutation

Incidental Mutation 'R8690:Cdh17'

668292

Institutional Source

Beutler Lab

Gene Symbol

Cdh17

Ensembl Gene

ENSMUSG00000028217

Gene Name

cadherin 17

Synonyms

BILL-cadherin, HPT-1, LI-cadherin

MMRRC Submission

068544-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.186) question?

Stock #

R8690 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

11758157-11817905 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 11783163 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 168 (I168N)

Ref Sequence

ENSEMBL: ENSMUSP00000029871 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029871] [ENSMUST00000108303]

AlphaFold

Q9R100

Predicted Effect

probably benign
Transcript: ENSMUST00000029871
AA Change: I168N

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000029871
Gene: ENSMUSG00000028217
AA Change: I168N

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
CA	44	123	5.27e-10	SMART
CA	147	241	6.9e-14	SMART
CA	258	337	3.05e-15	SMART
CA	361	446	3.29e-11	SMART
CA	471	564	5.27e-10	SMART
CA	587	664	5.59e-23	SMART
Blast:CA	687	771	5e-39	BLAST
transmembrane domain	784	806	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108303
AA Change: I168N

PolyPhen 2 Score 0.047 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000103938
Gene: ENSMUSG00000028217
AA Change: I168N

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
CA	44	123	5.27e-10	SMART
CA	147	241	6.9e-14	SMART
CA	258	337	3.05e-15	SMART
CA	361	446	3.29e-11	SMART
CA	471	564	5.27e-10	SMART
CA	587	664	5.59e-23	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (73/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the cadherin superfamily, genes encoding calcium-dependent, membrane-associated glycoproteins. The encoded protein is cadherin-like, consisting of an extracellular region, containing 7 cadherin domains, and a transmembrane region but lacking the conserved cytoplasmic domain. The protein is a component of the gastrointestinal tract and pancreatic ducts, acting as an intestinal proton-dependent peptide transporter in the first step in oral absorption of many medically important peptide-based drugs. The protein may also play a role in the morphological organization of liver and intestine. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2009]
PHENOTYPE: Homozygous mutant mice exhibit impaired B lymphocyte development and impaired IgG1 and IgG3 antibody response to T-independent antigen. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700097O09Rik	T	A	12: 55,107,957 (GRCm39)	T81S	possibly damaging	Het
Ablim2	C	T	5: 36,030,518 (GRCm39)	A581V	possibly damaging	Het
Acbd5	T	A	2: 22,979,710 (GRCm39)	S210T	probably benign	Het
Adam10	T	A	9: 70,655,505 (GRCm39)	F324L	probably damaging	Het
Ak6	A	G	13: 100,791,857 (GRCm39)	N100S	possibly damaging	Het
Angptl3	G	T	4: 98,925,759 (GRCm39)	V362L	probably benign	Het
Ano9	C	A	7: 140,684,220 (GRCm39)	W514L	probably benign	Het
Asb8	T	C	15: 98,034,108 (GRCm39)	Y149C	probably damaging	Het
Bcl6b	C	A	11: 70,117,447 (GRCm39)	A392S	probably damaging	Het
Cad	T	A	5: 31,232,500 (GRCm39)	I1855N	possibly damaging	Het
Calm5	G	A	13: 3,904,277 (GRCm39)	G4R	probably damaging	Het
Carm1	T	C	9: 21,480,808 (GRCm39)	V94A	probably damaging	Het
Ccnl1	A	T	3: 65,855,165 (GRCm39)	S399R	possibly damaging	Het
Ces2g	C	T	8: 105,693,605 (GRCm39)	R429C	probably benign	Het
Chd3	T	C	11: 69,246,648 (GRCm39)		probably benign	Het
Cmtr2	T	A	8: 110,948,977 (GRCm39)	M429K	probably benign	Het
Cnga1	T	G	5: 72,761,835 (GRCm39)	I560L	probably benign	Het
Col6a5	A	G	9: 105,759,796 (GRCm39)	Y1975H	probably damaging	Het
Copb1	T	C	7: 113,849,463 (GRCm39)	I47V	probably benign	Het
Crbn	G	A	6: 106,777,010 (GRCm39)		probably benign	Het
Ddx41	A	G	13: 55,680,939 (GRCm39)	L324P	probably damaging	Het
Dhx57	A	G	17: 80,577,794 (GRCm39)		probably benign	Het
Dlgap2	A	T	8: 14,793,430 (GRCm39)	I475F	probably benign	Het
Dock2	T	A	11: 34,618,287 (GRCm39)	K110*	probably null	Het
Dpp7	T	C	2: 25,245,645 (GRCm39)	D147G	probably damaging	Het
Dync2h1	G	T	9: 7,075,824 (GRCm39)	D3014E	probably damaging	Het
Efcab5	A	T	11: 76,994,115 (GRCm39)	F1291I	probably damaging	Het
Endov	T	A	11: 119,382,736 (GRCm39)	V61D	probably benign	Het
Etv3	C	A	3: 87,443,786 (GRCm39)	P457T	possibly damaging	Het
Fam185a	T	A	5: 21,638,766 (GRCm39)	H199Q	probably benign	Het
Fat3	T	A	9: 15,878,397 (GRCm39)	E3361D	probably benign	Het
Fbn1	T	C	2: 125,186,015 (GRCm39)		probably benign	Het
Gm17079	A	T	14: 51,932,787 (GRCm39)	W37R		Het
Gpr68	T	C	12: 100,845,292 (GRCm39)	H84R	probably benign	Het
Gramd1b	A	T	9: 40,215,674 (GRCm39)	S725R	probably damaging	Het
Greb1	T	A	12: 16,746,548 (GRCm39)	T1241S	probably benign	Het
Hcn4	T	C	9: 58,751,193 (GRCm39)	M273T	probably benign	Het
Hdlbp	A	G	1: 93,341,640 (GRCm39)	V973A	probably damaging	Het
Ighv8-11	A	T	12: 115,531,164 (GRCm39)		probably benign	Het
Itpkb	A	T	1: 180,249,346 (GRCm39)	Q907L	probably benign	Het
Lmo7	T	A	14: 102,168,644 (GRCm39)	N1634K	unknown	Het
Lrrk1	C	A	7: 65,952,477 (GRCm39)	L486F	probably benign	Het
Mdfic	G	A	6: 15,799,653 (GRCm39)	C260Y	probably damaging	Het
Mdh2	T	C	5: 135,814,882 (GRCm39)	I140T	probably benign	Het
Myo9a	T	C	9: 59,782,657 (GRCm39)	V1775A	probably benign	Het
Or1j14	T	C	2: 36,418,207 (GRCm39)	V261A	probably benign	Het
Or51d1	C	A	7: 102,348,028 (GRCm39)	D194E	probably damaging	Het
Or52n3	T	C	7: 104,530,762 (GRCm39)	Y283H	probably damaging	Het
P2rx2	C	T	5: 110,490,380 (GRCm39)	V112I	probably damaging	Het
Psme4	T	A	11: 30,787,319 (GRCm39)	V1038E	probably benign	Het
Rab25	T	A	3: 88,452,388 (GRCm39)	R73S	probably damaging	Het
Rab8a	TA	TAA	8: 72,925,130 (GRCm39)		probably null	Het
Rnf213	T	C	11: 119,308,955 (GRCm39)	Y729H		Het
Rnf213	A	G	11: 119,332,038 (GRCm39)	T2417A		Het
Rnft2	C	A	5: 118,366,935 (GRCm39)	A268S	probably benign	Het
Samhd1	T	C	2: 156,971,794 (GRCm39)	D116G	probably benign	Het
Sema6d	T	A	2: 124,506,937 (GRCm39)	V915E	probably benign	Het
Sp140l2	G	A	1: 85,235,170 (GRCm39)	H130Y	probably benign	Het
Srcin1	C	A	11: 97,414,368 (GRCm39)	R1045L	probably damaging	Het
St18	T	A	1: 6,872,788 (GRCm39)	N174K	probably benign	Het
Stac3	G	A	10: 127,339,494 (GRCm39)	C130Y	probably damaging	Het
Stum	G	C	1: 180,310,740 (GRCm39)	P52R	probably damaging	Het
Tbc1d2	C	T	4: 46,615,106 (GRCm39)	E526K	possibly damaging	Het
Tiam1	A	G	16: 89,694,900 (GRCm39)	S186P	probably damaging	Het
Tiparp	G	C	3: 65,460,963 (GRCm39)	V651L	probably benign	Het
Tmem19	C	T	10: 115,179,765 (GRCm39)	G244S	probably damaging	Het
Trip11	A	T	12: 101,839,656 (GRCm39)	V1658D	possibly damaging	Het
Ttyh3	A	C	5: 140,612,944 (GRCm39)	Y453D	probably damaging	Het
Ttyh3	G	T	5: 140,612,945 (GRCm39)	S452R	probably benign	Het
Ube2h	C	T	6: 30,262,338 (GRCm39)		probably benign	Het
Zbtb4	T	C	11: 69,667,618 (GRCm39)	S308P	probably damaging	Het
Zfyve1	T	C	12: 83,597,681 (GRCm39)	E672G	probably damaging	Het
Zswim5	G	A	4: 116,842,002 (GRCm39)	D861N	probably damaging	Het

Other mutations in Cdh17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00715:Cdh17	APN	4	11,797,780 (GRCm39)	splice site	probably benign
IGL00823:Cdh17	APN	4	11,783,412 (GRCm39)	missense	possibly damaging	0.78
IGL00824:Cdh17	APN	4	11,784,675 (GRCm39)	missense	probably benign	0.00
IGL01572:Cdh17	APN	4	11,784,621 (GRCm39)	splice site	probably benign
IGL01602:Cdh17	APN	4	11,795,670 (GRCm39)	missense	probably damaging	1.00
IGL01605:Cdh17	APN	4	11,795,670 (GRCm39)	missense	probably damaging	1.00
IGL01759:Cdh17	APN	4	11,771,262 (GRCm39)	splice site	probably benign
IGL02065:Cdh17	APN	4	11,771,373 (GRCm39)	splice site	probably benign
IGL02448:Cdh17	APN	4	11,784,680 (GRCm39)	missense	probably benign
IGL02869:Cdh17	APN	4	11,814,908 (GRCm39)	missense	probably benign	0.00
IGL03088:Cdh17	APN	4	11,810,473 (GRCm39)	missense	probably damaging	1.00
Disruptive	UTSW	4	11,784,654 (GRCm39)	missense	probably damaging	1.00
G1Funyon:Cdh17	UTSW	4	11,795,659 (GRCm39)	missense	probably damaging	0.99
R0054:Cdh17	UTSW	4	11,785,186 (GRCm39)	missense	possibly damaging	0.59
R0081:Cdh17	UTSW	4	11,785,280 (GRCm39)	splice site	probably benign
R0101:Cdh17	UTSW	4	11,771,341 (GRCm39)	missense	probably benign	0.00
R0432:Cdh17	UTSW	4	11,771,273 (GRCm39)	nonsense	probably null
R0718:Cdh17	UTSW	4	11,810,451 (GRCm39)	missense	possibly damaging	0.68
R0946:Cdh17	UTSW	4	11,795,581 (GRCm39)	missense	probably benign	0.01
R1076:Cdh17	UTSW	4	11,795,581 (GRCm39)	missense	probably benign	0.01
R1217:Cdh17	UTSW	4	11,799,676 (GRCm39)	missense	probably benign	0.04
R2060:Cdh17	UTSW	4	11,803,982 (GRCm39)	missense	probably benign	0.03
R3808:Cdh17	UTSW	4	11,795,671 (GRCm39)	missense	probably damaging	0.99
R3850:Cdh17	UTSW	4	11,785,201 (GRCm39)	missense	probably damaging	1.00
R4111:Cdh17	UTSW	4	11,814,628 (GRCm39)	missense	probably damaging	0.99
R4112:Cdh17	UTSW	4	11,814,628 (GRCm39)	missense	probably damaging	0.99
R4583:Cdh17	UTSW	4	11,810,466 (GRCm39)	missense	probably benign	0.00
R4683:Cdh17	UTSW	4	11,817,036 (GRCm39)	missense	possibly damaging	0.78
R4797:Cdh17	UTSW	4	11,810,390 (GRCm39)	missense	probably benign	0.00
R5050:Cdh17	UTSW	4	11,784,654 (GRCm39)	missense	probably damaging	1.00
R5071:Cdh17	UTSW	4	11,810,325 (GRCm39)	missense	probably damaging	0.98
R5569:Cdh17	UTSW	4	11,816,990 (GRCm39)	missense	probably damaging	0.96
R5790:Cdh17	UTSW	4	11,814,945 (GRCm39)	splice site	probably null
R6077:Cdh17	UTSW	4	11,803,969 (GRCm39)	missense	probably benign	0.22
R6581:Cdh17	UTSW	4	11,799,615 (GRCm39)	missense	probably damaging	1.00
R7274:Cdh17	UTSW	4	11,783,174 (GRCm39)	nonsense	probably null
R7647:Cdh17	UTSW	4	11,814,698 (GRCm39)	missense	probably damaging	1.00
R7649:Cdh17	UTSW	4	11,814,698 (GRCm39)	missense	probably damaging	1.00
R7934:Cdh17	UTSW	4	11,799,754 (GRCm39)	critical splice donor site	probably null
R8290:Cdh17	UTSW	4	11,817,037 (GRCm39)	missense	probably benign
R8301:Cdh17	UTSW	4	11,795,659 (GRCm39)	missense	probably damaging	0.99
R8709:Cdh17	UTSW	4	11,795,685 (GRCm39)	nonsense	probably null
R8818:Cdh17	UTSW	4	11,771,323 (GRCm39)	missense	probably damaging	1.00
R8940:Cdh17	UTSW	4	11,783,226 (GRCm39)	missense	probably damaging	1.00
R9243:Cdh17	UTSW	4	11,771,333 (GRCm39)	missense	probably benign	0.26
R9325:Cdh17	UTSW	4	11,810,319 (GRCm39)	missense	probably damaging	0.99
R9457:Cdh17	UTSW	4	11,771,329 (GRCm39)	missense	probably damaging	0.98
X0067:Cdh17	UTSW	4	11,785,224 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TTCCTGAGGACTCCTATAGGATAC -3'
(R):5'- CCTGGGATCCTGTAGAAGTTGG -3'

Sequencing Primer
(F):5'- GTTAGGAACTGAGGCAATTTCC -3'
(R):5'- ATCCTGTAGAAGTTGGGGAGG -3'

Posted On

2021-04-30