Mutagenetix > Incidental Mutation

Incidental Mutation 'R8795:Usp15'

671208

Institutional Source

Beutler Lab

Gene Symbol

Usp15

Ensembl Gene

ENSMUSG00000020124

Gene Name

ubiquitin specific peptidase 15

Synonyms

Gcap18, E430033I05Rik, 4921514G19Rik

MMRRC Submission

068636-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R8795 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

122940911-123032900 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 122988953 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Tyrosine at position 255 (N255Y)

Ref Sequence

ENSEMBL: ENSMUSP00000151244 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020334] [ENSMUST00000220377]

AlphaFold

Q8R5H1

Predicted Effect

probably benign
Transcript: ENSMUST00000020334

SMART Domains

Protein: ENSMUSP00000020334
Gene: ENSMUSG00000020124

Domain	Start	End	E-Value	Type
DUSP	23	121	1.5e-46	SMART
Pfam:Ubiquitin_3	135	222	3.7e-38	PFAM
low complexity region	242	262	N/A	INTRINSIC
Pfam:UCH	288	930	6.8e-86	PFAM
Pfam:UCH_1	289	506	1.1e-5	PFAM
Pfam:USP7_C2	460	608	2e-7	PFAM
Pfam:UCH_1	756	912	1.3e-11	PFAM
low complexity region	959	976	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000220377
AA Change: N255Y

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

97% (72/74)

MGI Phenotype

FUNCTION: The protein encoded by this gene is a member of the large ubiquitin specific protease (Usp) family of proteins. These proteins are known to cleave ubiquitin, and contain a conserved cysteine residue (Cys box) and two conserved histidine residues (His box) that are thought to form part of the active site of the protease. This protein has been shown to cleave both the ubiquitin-proline and the ubiquitin-methionine bonds in vitro. This protein is thought to regulate many cellular processes through its deubiquitination activity, including the transforming growth factor beta (TGF-beta) pathway. Cardiac-specific overexpression of the human ortholog of this gene in mice causes enlargement of the heart that is more pronounced in the atrium than in the ventricle. This gene has two pseudogenes on chromosome 14. Alternative splicing results in multiple transcript variants that encode multiple protein isoforms.[provided by RefSeq, Aug 2014]
PHENOTYPE: Mice homozygous for a knock-out allele or ENU induced allele exhibit resistance to pathological neuroinflammation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars2	A	T	17: 45,818,598 (GRCm39)	M128L	probably damaging	Het
Abcc12	A	G	8: 87,258,213 (GRCm39)	S768P	possibly damaging	Het
Adamts8	A	T	9: 30,854,484 (GRCm39)	M118L	probably benign	Het
Adgrl4	A	G	3: 151,216,416 (GRCm39)	N533S	probably benign	Het
Agk	T	G	6: 40,363,854 (GRCm39)	I278R	possibly damaging	Het
Atr	T	A	9: 95,749,584 (GRCm39)	W466R	probably damaging	Het
Cacna1h	C	T	17: 25,612,538 (GRCm39)	V387I	probably damaging	Het
Cand2	T	G	6: 115,763,889 (GRCm39)	D270E	probably benign	Het
Ccdc107	C	T	4: 43,495,514 (GRCm39)	T139M	probably damaging	Het
Cenpl	A	G	1: 160,910,584 (GRCm39)	E177G	probably benign	Het
Clint1	C	A	11: 45,775,178 (GRCm39)	Q56K	probably damaging	Het
Col9a1	A	G	1: 24,233,812 (GRCm39)	R249G	unknown	Het
Cpne5	C	T	17: 29,423,662 (GRCm39)		probably benign	Het
Ddx27	A	G	2: 166,859,730 (GRCm39)	D54G	probably benign	Het
Dync2h1	C	T	9: 7,137,087 (GRCm39)	E1468K	probably benign	Het
E130308A19Rik	A	T	4: 59,737,676 (GRCm39)	N429I	possibly damaging	Het
Endov	G	T	11: 119,390,380 (GRCm39)	G86C	possibly damaging	Het
Ercc5	A	T	1: 44,203,089 (GRCm39)	Y242F	possibly damaging	Het
Gabrr1	T	A	4: 33,161,756 (GRCm39)	V360E	probably damaging	Het
Gcn1	T	C	5: 115,752,454 (GRCm39)	I2153T	probably benign	Het
Gje1	T	C	10: 14,593,870 (GRCm39)	N8S	probably benign	Het
Greb1l	A	G	18: 10,553,739 (GRCm39)	H1580R	probably damaging	Het
Grin1	C	G	2: 25,187,468 (GRCm39)	S614T	probably damaging	Het
Hmcn2	A	G	2: 31,315,393 (GRCm39)	N3714S	probably benign	Het
Idh1	CA	CAA	1: 65,204,347 (GRCm39)		probably null	Het
Ifitm2	A	T	7: 140,535,661 (GRCm39)	H56Q	probably damaging	Het
Ifrd1	G	A	12: 40,263,076 (GRCm39)	T218I	possibly damaging	Het
Igkv1-99	G	T	6: 68,519,370 (GRCm39)	G109V		Het
Impg2	A	G	16: 56,080,611 (GRCm39)	E805G	probably benign	Het
Itgb6	T	A	2: 60,483,629 (GRCm39)	N260Y	probably damaging	Het
Maneal	G	T	4: 124,750,483 (GRCm39)	Y424*	probably null	Het
Map4k2	T	G	19: 6,401,640 (GRCm39)	C677W	probably damaging	Het
Med6	T	C	12: 81,638,034 (GRCm39)	H59R	probably benign	Het
Mms22l	T	A	4: 24,536,245 (GRCm39)	D571E	probably benign	Het
Mroh8	A	G	2: 157,067,493 (GRCm39)	F622S	probably damaging	Het
Mrpl44	A	T	1: 79,753,974 (GRCm39)	Q42L	probably damaging	Het
Myh8	G	T	11: 67,174,203 (GRCm39)		probably benign	Het
Ndufb2	T	C	6: 39,569,586 (GRCm39)	V13A	probably benign	Het
Nf1	T	A	11: 79,316,442 (GRCm39)	L499Q	probably damaging	Het
Opa1	T	C	16: 29,448,450 (GRCm39)	C874R	probably damaging	Het
Or1i2	T	C	10: 78,447,698 (GRCm39)	Y259C	probably damaging	Het
Or4c99	T	G	2: 88,329,855 (GRCm39)	V142G	probably damaging	Het
Or4k37	T	A	2: 111,158,881 (GRCm39)	L39*	probably null	Het
Or6c6	T	C	10: 129,187,194 (GRCm39)	I254T	probably damaging	Het
Pld3	T	A	7: 27,235,286 (GRCm39)	D314V	possibly damaging	Het
Pou6f1	A	C	15: 100,485,686 (GRCm39)	C114W	possibly damaging	Het
Prl2c1	A	C	13: 28,033,389 (GRCm39)	Q2P	possibly damaging	Het
Prl2c1	G	T	13: 28,033,390 (GRCm39)	Q2H	probably benign	Het
Pzp	C	A	6: 128,471,701 (GRCm39)	K908N	probably damaging	Het
Rab6b	G	A	9: 103,039,825 (GRCm39)	G125D	probably damaging	Het
Rhbdd2	C	T	5: 135,663,985 (GRCm39)	T69I	probably benign	Het
Samd9l	A	T	6: 3,374,221 (GRCm39)	Y1013*	probably null	Het
Slc13a4	T	A	6: 35,260,230 (GRCm39)	T217S	probably benign	Het
Slc66a3	A	G	12: 17,043,481 (GRCm39)	W150R	probably damaging	Het
Smarcad1	T	C	6: 65,049,033 (GRCm39)	L253S	probably benign	Het
Snrpa	C	A	7: 26,891,034 (GRCm39)	V146L	possibly damaging	Het
Spata31f1e	A	G	4: 42,792,992 (GRCm39)	V380A	probably benign	Het
Srrt	A	T	5: 137,298,238 (GRCm39)	D311E	probably benign	Het
Stk32b	A	T	5: 37,806,483 (GRCm39)	F20L	probably damaging	Het
Sult2a7	T	C	7: 14,224,014 (GRCm39)	T136A	probably benign	Het
Sv2a	G	A	3: 96,094,396 (GRCm39)	V244I	probably benign	Het
Tesk1	T	A	4: 43,446,070 (GRCm39)		probably null	Het
Tmem260	A	G	14: 48,689,370 (GRCm39)	H63R	probably damaging	Het
Ugt1a6b	A	G	1: 88,034,794 (GRCm39)	E44G	probably benign	Het
Unc79	A	T	12: 103,074,513 (GRCm39)	I1363F	probably damaging	Het
Usp35	A	G	7: 96,961,167 (GRCm39)	V753A	possibly damaging	Het
Usp35	T	C	7: 96,961,270 (GRCm39)	N719D	probably benign	Het
Vmn2r104	T	A	17: 20,262,988 (GRCm39)	I158L	probably benign	Het
Vmn2r69	A	T	7: 85,064,883 (GRCm39)	M1K	probably null	Het
Zan	C	T	5: 137,396,522 (GRCm39)	E4345K	unknown	Het
Zc3h7a	A	T	16: 10,965,147 (GRCm39)	M662K	possibly damaging	Het
Zfp512	G	A	5: 31,634,134 (GRCm39)	V438M	probably damaging	Het
Zfy1	T	C	Y: 738,945 (GRCm39)	D87G	unknown	Het
Zmym4	A	T	4: 126,799,819 (GRCm39)	V653E	probably benign	Het

Other mutations in Usp15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00498:Usp15	APN	10	122,949,501 (GRCm39)	missense	probably benign	0.00
IGL02148:Usp15	APN	10	122,963,742 (GRCm39)	missense	probably damaging	1.00
IGL02737:Usp15	APN	10	122,966,937 (GRCm39)	missense	probably damaging	1.00
IGL03054:Usp15	APN	10	122,961,836 (GRCm39)	splice site	probably benign
IGL03163:Usp15	APN	10	123,007,049 (GRCm39)	missense	probably damaging	0.96
R1755:Usp15	UTSW	10	122,968,949 (GRCm39)	missense	probably damaging	0.98
R1981:Usp15	UTSW	10	122,960,946 (GRCm39)	splice site	probably benign
R2049:Usp15	UTSW	10	122,955,042 (GRCm39)	missense	probably damaging	1.00
R3037:Usp15	UTSW	10	122,999,522 (GRCm39)	missense	probably damaging	1.00
R3698:Usp15	UTSW	10	123,017,643 (GRCm39)	missense	probably damaging	1.00
R3828:Usp15	UTSW	10	123,032,775 (GRCm39)	missense	possibly damaging	0.95
R3845:Usp15	UTSW	10	122,955,040 (GRCm39)	missense	probably damaging	1.00
R4838:Usp15	UTSW	10	122,963,662 (GRCm39)	missense	probably damaging	0.99
R4954:Usp15	UTSW	10	122,967,303 (GRCm39)	missense	probably damaging	1.00
R5204:Usp15	UTSW	10	122,949,545 (GRCm39)	missense	probably benign	0.06
R5274:Usp15	UTSW	10	123,004,256 (GRCm39)	missense	probably damaging	1.00
R5387:Usp15	UTSW	10	122,967,191 (GRCm39)	missense	probably damaging	0.96
R5474:Usp15	UTSW	10	122,963,950 (GRCm39)	missense	probably damaging	1.00
R5501:Usp15	UTSW	10	123,011,804 (GRCm39)	missense	probably damaging	0.99
R5665:Usp15	UTSW	10	122,966,892 (GRCm39)	nonsense	probably null
R5846:Usp15	UTSW	10	123,017,647 (GRCm39)	missense	probably damaging	1.00
R5850:Usp15	UTSW	10	122,960,417 (GRCm39)	critical splice donor site	probably null
R6163:Usp15	UTSW	10	123,004,210 (GRCm39)	missense	probably damaging	1.00
R6735:Usp15	UTSW	10	123,004,272 (GRCm39)	missense	possibly damaging	0.86
R6828:Usp15	UTSW	10	122,963,894 (GRCm39)	missense	probably damaging	1.00
R7170:Usp15	UTSW	10	123,007,100 (GRCm39)	missense	probably damaging	1.00
R7197:Usp15	UTSW	10	122,966,910 (GRCm39)	missense	possibly damaging	0.92
R7351:Usp15	UTSW	10	122,968,904 (GRCm39)	missense	probably damaging	1.00
R7368:Usp15	UTSW	10	123,032,798 (GRCm39)	missense	possibly damaging	0.86
R7447:Usp15	UTSW	10	123,011,786 (GRCm39)	missense	probably damaging	1.00
R8099:Usp15	UTSW	10	122,982,826 (GRCm39)	missense	possibly damaging	0.87
R8169:Usp15	UTSW	10	122,961,798 (GRCm39)	missense
R8316:Usp15	UTSW	10	122,959,848 (GRCm39)	missense
R9005:Usp15	UTSW	10	122,982,703 (GRCm39)	missense	possibly damaging	0.89
R9023:Usp15	UTSW	10	122,961,498 (GRCm39)	missense	possibly damaging	0.85
R9156:Usp15	UTSW	10	122,949,553 (GRCm39)	missense	probably benign	0.13
R9198:Usp15	UTSW	10	123,004,143 (GRCm39)	missense	probably damaging	1.00
R9278:Usp15	UTSW	10	123,007,112 (GRCm39)	missense	probably damaging	0.96
R9592:Usp15	UTSW	10	122,999,522 (GRCm39)	missense	probably damaging	1.00
Z1176:Usp15	UTSW	10	123,032,866 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- CGACACAGGAGAGCTGTATTTG -3'
(R):5'- TACCCTGAGAAGTGGTATGTTG -3'

Sequencing Primer
(F):5'- ACACAGGAGAGCTGTATTTGTCTTTG -3'
(R):5'- CCCTGAGAAGTGGTATGTTGAGTTAG -3'

Posted On

2021-04-30