Incidental Mutation 'R9263:Vwa3b'
| ID |
702361 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Vwa3b
|
| Ensembl Gene |
ENSMUSG00000050122 |
| Gene Name |
von Willebrand factor A domain containing 3B |
| Synonyms |
A230074B11Rik, 4921511C04Rik |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.055)
|
| Stock # |
R9263 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
1 |
| Chromosomal Location |
37068372-37226689 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 37099493 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Proline to Glutamine
at position 236
(P236Q)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000125460
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000027289]
[ENSMUST00000067178]
[ENSMUST00000117172]
[ENSMUST00000124404]
[ENSMUST00000162449]
|
| AlphaFold |
A0A571BE33 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000027289
AA Change: P236Q
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000027289
Gene: ENSMUSG00000050122
AA Change: P236Q
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4537
|
159 |
285 |
9.1e-36 |
PFAM |
|
low complexity region
|
327 |
336 |
N/A |
INTRINSIC |
|
low complexity region
|
345 |
364 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000067178
AA Change: P236Q
PolyPhen 2
Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000069700
Gene: ENSMUSG00000050122
AA Change: P236Q
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:VWA
|
112 |
272 |
7e-16 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000117172
AA Change: P236Q
PolyPhen 2
Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000114022
Gene: ENSMUSG00000050122
AA Change: P236Q
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:VWA
|
112 |
272 |
7e-16 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000124404
AA Change: P236Q
PolyPhen 2
Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000141690
Gene: ENSMUSG00000050122
AA Change: P236Q
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:VWA
|
112 |
272 |
5e-16 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000162449
AA Change: P236Q
PolyPhen 2
Score 0.430 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000125460
Gene: ENSMUSG00000050122
AA Change: P236Q
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:VWA
|
112 |
272 |
7e-16 |
BLAST |
|
| Meta Mutation Damage Score |
0.1537 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 98.9%
|
| Validation Efficiency |
100% (45/45) |
| Allele List at MGI |
All alleles(71) : Targeted(3) Gene trapped(68)
|
| Other mutations in this stock |
Total: 44 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Akr1c14 |
T |
C |
13: 4,113,620 (GRCm39) |
S51P |
probably damaging |
Het |
| Arhgef38 |
T |
G |
3: 132,866,529 (GRCm39) |
K203Q |
|
Het |
| Cacna1d |
G |
A |
14: 29,796,925 (GRCm39) |
R1517W |
probably damaging |
Het |
| Ccdc80 |
T |
A |
16: 44,915,949 (GRCm39) |
M235K |
probably damaging |
Het |
| Cdc42bpg |
T |
C |
19: 6,372,149 (GRCm39) |
S1414P |
probably damaging |
Het |
| Dab2ip |
A |
G |
2: 35,602,891 (GRCm39) |
D395G |
probably damaging |
Het |
| Dmxl2 |
T |
C |
9: 54,358,945 (GRCm39) |
E255G |
probably benign |
Het |
| Dnaja1 |
T |
A |
4: 40,724,133 (GRCm39) |
M98K |
probably benign |
Het |
| Dnajb7 |
G |
A |
15: 81,292,266 (GRCm39) |
R24C |
probably benign |
Het |
| Dscc1 |
C |
A |
15: 54,947,505 (GRCm39) |
W225L |
probably damaging |
Het |
| Dsg2 |
T |
A |
18: 20,727,223 (GRCm39) |
V590D |
probably benign |
Het |
| Epcam |
A |
G |
17: 87,947,960 (GRCm39) |
|
probably benign |
Het |
| Fbn2 |
T |
C |
18: 58,257,344 (GRCm39) |
Y341C |
probably damaging |
Het |
| Fry |
T |
G |
5: 150,322,728 (GRCm39) |
L1040R |
probably damaging |
Het |
| Gm9639 |
C |
T |
10: 77,630,828 (GRCm39) |
C28Y |
unknown |
Het |
| Hsd17b7 |
A |
G |
1: 169,794,833 (GRCm39) |
S69P |
probably damaging |
Het |
| Igsf1 |
A |
G |
X: 48,884,191 (GRCm39) |
M2T |
possibly damaging |
Het |
| Katnip |
T |
A |
7: 125,469,867 (GRCm39) |
D1445E |
probably damaging |
Het |
| Kmt2d |
TGCTGCTGCTGCTGCTGCTGG |
TG |
15: 98,747,499 (GRCm39) |
|
probably null |
Het |
| Lrp5 |
T |
C |
19: 3,654,190 (GRCm39) |
Y1079C |
probably damaging |
Het |
| Lrp6 |
T |
C |
6: 134,457,467 (GRCm39) |
D779G |
probably damaging |
Het |
| Nbea |
AC |
A |
3: 55,998,393 (GRCm39) |
|
probably null |
Het |
| Pacsin1 |
A |
G |
17: 27,923,924 (GRCm39) |
D106G |
probably damaging |
Het |
| Pcm1 |
T |
A |
8: 41,732,790 (GRCm39) |
D682E |
probably benign |
Het |
| Pex6 |
A |
G |
17: 47,023,231 (GRCm39) |
D269G |
probably benign |
Het |
| Rcor1 |
T |
A |
12: 111,078,327 (GRCm39) |
V474E |
|
Het |
| Rdh16 |
A |
G |
10: 127,649,306 (GRCm39) |
D254G |
probably benign |
Het |
| Rp1 |
A |
T |
1: 4,418,675 (GRCm39) |
D812E |
probably benign |
Het |
| Rp1 |
A |
G |
1: 4,419,160 (GRCm39) |
S651P |
probably benign |
Het |
| Sec16b |
G |
A |
1: 157,359,748 (GRCm39) |
|
probably benign |
Het |
| Sephs2 |
C |
T |
7: 126,872,122 (GRCm39) |
G324S |
probably damaging |
Het |
| Sirpb1a |
T |
C |
3: 15,481,992 (GRCm39) |
D112G |
probably damaging |
Het |
| Slc25a47 |
C |
G |
12: 108,820,215 (GRCm39) |
T73S |
probably benign |
Het |
| Slco4c1 |
A |
T |
1: 96,799,509 (GRCm39) |
L109H |
probably damaging |
Het |
| Smc2 |
A |
G |
4: 52,470,848 (GRCm39) |
E845G |
possibly damaging |
Het |
| Sstr3 |
G |
T |
15: 78,423,792 (GRCm39) |
N318K |
probably damaging |
Het |
| Suz12 |
A |
G |
11: 79,904,087 (GRCm39) |
|
probably benign |
Het |
| Sycp2 |
A |
G |
2: 178,035,931 (GRCm39) |
I252T |
probably damaging |
Het |
| Syne3 |
T |
C |
12: 104,934,415 (GRCm39) |
Y118C |
probably damaging |
Het |
| Tbx18 |
C |
A |
9: 87,611,521 (GRCm39) |
A170S |
probably damaging |
Het |
| Trak2 |
T |
C |
1: 58,985,481 (GRCm39) |
N6D |
probably benign |
Het |
| Ttn |
G |
A |
2: 76,720,868 (GRCm39) |
T6852I |
unknown |
Het |
| Tufm |
A |
G |
7: 126,088,100 (GRCm39) |
E201G |
probably damaging |
Het |
| Xirp2 |
A |
G |
2: 67,345,289 (GRCm39) |
Y2510C |
possibly damaging |
Het |
|
| Other mutations in Vwa3b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01404:Vwa3b
|
APN |
1 |
37,193,117 (GRCm39) |
missense |
probably benign |
0.28 |
|
IGL02236:Vwa3b
|
APN |
1 |
37,193,132 (GRCm39) |
splice site |
probably benign |
|
|
IGL02653:Vwa3b
|
APN |
1 |
37,214,646 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL02823:Vwa3b
|
APN |
1 |
37,225,985 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL03030:Vwa3b
|
APN |
1 |
37,084,049 (GRCm39) |
missense |
probably damaging |
1.00 |
|
P0014:Vwa3b
|
UTSW |
1 |
37,212,995 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R0035:Vwa3b
|
UTSW |
1 |
37,204,770 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R0102:Vwa3b
|
UTSW |
1 |
37,174,595 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0556:Vwa3b
|
UTSW |
1 |
37,203,566 (GRCm39) |
splice site |
probably benign |
|
|
R1061:Vwa3b
|
UTSW |
1 |
37,196,511 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1386:Vwa3b
|
UTSW |
1 |
37,090,962 (GRCm39) |
critical splice donor site |
probably null |
|
|
R2441:Vwa3b
|
UTSW |
1 |
37,182,150 (GRCm39) |
unclassified |
probably benign |
|
|
R3117:Vwa3b
|
UTSW |
1 |
37,148,158 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R3119:Vwa3b
|
UTSW |
1 |
37,148,158 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4081:Vwa3b
|
UTSW |
1 |
37,074,905 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4393:Vwa3b
|
UTSW |
1 |
37,084,259 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4897:Vwa3b
|
UTSW |
1 |
37,153,684 (GRCm39) |
splice site |
probably benign |
|
|
R4950:Vwa3b
|
UTSW |
1 |
37,124,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4978:Vwa3b
|
UTSW |
1 |
37,154,752 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5141:Vwa3b
|
UTSW |
1 |
37,226,102 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5286:Vwa3b
|
UTSW |
1 |
37,084,120 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5356:Vwa3b
|
UTSW |
1 |
37,153,664 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5426:Vwa3b
|
UTSW |
1 |
37,154,752 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5480:Vwa3b
|
UTSW |
1 |
37,139,787 (GRCm39) |
nonsense |
probably null |
|
|
R5727:Vwa3b
|
UTSW |
1 |
37,174,600 (GRCm39) |
missense |
probably benign |
0.10 |
|
R5876:Vwa3b
|
UTSW |
1 |
37,115,520 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6191:Vwa3b
|
UTSW |
1 |
37,153,612 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R6219:Vwa3b
|
UTSW |
1 |
37,139,779 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R6250:Vwa3b
|
UTSW |
1 |
37,090,966 (GRCm39) |
splice site |
probably null |
|
|
R6281:Vwa3b
|
UTSW |
1 |
37,163,063 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6419:Vwa3b
|
UTSW |
1 |
37,196,457 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6467:Vwa3b
|
UTSW |
1 |
37,124,367 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6512:Vwa3b
|
UTSW |
1 |
37,102,723 (GRCm39) |
intron |
probably benign |
|
|
R6541:Vwa3b
|
UTSW |
1 |
37,090,842 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6724:Vwa3b
|
UTSW |
1 |
37,084,112 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6728:Vwa3b
|
UTSW |
1 |
37,196,453 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7046:Vwa3b
|
UTSW |
1 |
37,212,959 (GRCm39) |
missense |
probably benign |
|
|
R7117:Vwa3b
|
UTSW |
1 |
37,174,634 (GRCm39) |
missense |
|
|
|
R7304:Vwa3b
|
UTSW |
1 |
37,203,586 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7402:Vwa3b
|
UTSW |
1 |
37,153,678 (GRCm39) |
nonsense |
probably null |
|
|
R7762:Vwa3b
|
UTSW |
1 |
37,163,126 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7911:Vwa3b
|
UTSW |
1 |
37,193,107 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8213:Vwa3b
|
UTSW |
1 |
37,168,020 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8402:Vwa3b
|
UTSW |
1 |
37,204,879 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8697:Vwa3b
|
UTSW |
1 |
37,115,461 (GRCm39) |
missense |
probably benign |
0.09 |
|
R8758:Vwa3b
|
UTSW |
1 |
37,176,873 (GRCm39) |
missense |
|
|
|
R8874:Vwa3b
|
UTSW |
1 |
37,074,839 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R9011:Vwa3b
|
UTSW |
1 |
37,154,767 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9012:Vwa3b
|
UTSW |
1 |
37,124,391 (GRCm39) |
missense |
probably benign |
0.15 |
|
R9015:Vwa3b
|
UTSW |
1 |
37,203,597 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R9102:Vwa3b
|
UTSW |
1 |
37,174,593 (GRCm39) |
start codon destroyed |
probably null |
|
|
R9277:Vwa3b
|
UTSW |
1 |
37,196,534 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9294:Vwa3b
|
UTSW |
1 |
37,074,882 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9341:Vwa3b
|
UTSW |
1 |
37,153,615 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9343:Vwa3b
|
UTSW |
1 |
37,153,615 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9502:Vwa3b
|
UTSW |
1 |
37,099,520 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9758:Vwa3b
|
UTSW |
1 |
37,081,438 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCACTGAGCATAGCTTCTCTTC -3'
(R):5'- TCGCAGACCATGACGACTATAC -3'
Sequencing Primer
(F):5'- TCTGCAGCAACCAGAAAATGTGTTG -3'
(R):5'- CGACTATACATCATGACACAGAGGG -3'
|
| Posted On |
2022-03-25 |
Incidental Mutation