Mutagenetix > Incidental Mutation

Incidental Mutation 'R9760:Slc38a4'

732977

Institutional Source

Beutler Lab

Gene Symbol

Slc38a4

Ensembl Gene

ENSMUSG00000022464

Gene Name

solute carrier family 38, member 4

Synonyms

Ata3, SNAT4, 1700012A18Rik, 1110012E16Rik

MMRRC Submission

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.173) question?

Stock #

R9760 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

96892701-96953837 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 96896332 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 512 (K512E)

Ref Sequence

ENSEMBL: ENSMUSP00000023101 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023101] [ENSMUST00000166223] [ENSMUST00000230086] [ENSMUST00000231039]

AlphaFold

Q8R1S9

Predicted Effect

probably damaging
Transcript: ENSMUST00000023101
AA Change: K512E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000023101
Gene: ENSMUSG00000022464
AA Change: K512E

Domain	Start	End	E-Value	Type
Pfam:Aa_trans	73	263	4.9e-38	PFAM
Pfam:Aa_trans	302	535	2.1e-45	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000166223
AA Change: K512E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000127676
Gene: ENSMUSG00000022464
AA Change: K512E

Domain	Start	End	E-Value	Type
Pfam:Aa_trans	73	262	2.5e-38	PFAM
Pfam:Aa_trans	303	535	2.5e-45	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000230086
AA Change: K512E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000231039
AA Change: K512E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 99.1%
20x: 97.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SLC38A4 is found predominantly in liver and transports both cationic and neutral amino acids. The transport of cationic amino acids by SLC38A4 is Na(+) and pH independent, while the transport of neutral amino acids is Na(+) and pH dependent (Hatanaka et al., 2001 [PubMed 11342143]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abat	T	C	16: 8,399,794 (GRCm39)		probably null	Het
Adamts4	G	A	1: 171,086,334 (GRCm39)	D709N	probably benign	Het
Arhgef12	G	T	9: 42,903,318 (GRCm39)	D745E	probably damaging	Het
Cep250	A	G	2: 155,818,473 (GRCm39)	K883E	probably benign	Het
Cfdp1	T	C	8: 112,495,415 (GRCm39)	I268V	probably benign	Het
Cgnl1	G	T	9: 71,552,853 (GRCm39)	S1037*	probably null	Het
Clca3b	T	C	3: 144,552,610 (GRCm39)	N142S	probably benign	Het
Col6a6	A	T	9: 105,659,253 (GRCm39)	I564N	probably damaging	Het
Coq4	G	T	2: 29,678,482 (GRCm39)	R36L	probably benign	Het
Dact3	G	A	7: 16,620,131 (GRCm39)	S542N	unknown	Het
Dcaf1	A	G	9: 106,751,466 (GRCm39)	D1480G	unknown	Het
Dcdc2a	C	T	13: 25,389,443 (GRCm39)	T457I	probably damaging	Het
Ddi2	A	G	4: 141,411,196 (GRCm39)	V572A	probably damaging	Het
Ddx54	C	T	5: 120,761,672 (GRCm39)	R483C	probably benign	Het
Dennd5b	G	A	6: 148,969,997 (GRCm39)	S152F	probably benign	Het
Efcab14	C	T	4: 115,616,072 (GRCm39)	H252Y	probably benign	Het
Efhb	A	T	17: 53,770,298 (GRCm39)	F4I	probably damaging	Het
Esrrg	A	G	1: 187,775,569 (GRCm39)	D32G	probably benign	Het
Far2	C	A	6: 148,060,448 (GRCm39)	A267E	probably damaging	Het
Fhip2b	A	C	14: 70,827,621 (GRCm39)	V158G	possibly damaging	Het
Flnb	T	C	14: 7,929,846 (GRCm38)	I1992T	probably damaging	Het
Fmnl2	A	G	2: 52,944,527 (GRCm39)	S169G		Het
Galnt10	G	A	11: 57,656,514 (GRCm39)	V233I	probably benign	Het
Gbf1	C	A	19: 46,244,137 (GRCm39)	N210K	probably benign	Het
Gbp3	T	G	3: 142,276,283 (GRCm39)	S460A	probably benign	Het
Gm12185	T	A	11: 48,806,168 (GRCm39)	H341L	probably benign	Het
Gm5592	A	T	7: 40,939,234 (GRCm39)	I839F	possibly damaging	Het
Gnptab	A	G	10: 88,267,310 (GRCm39)	D467G	probably damaging	Het
Grin3a	A	T	4: 49,714,213 (GRCm39)	M844K	probably damaging	Het
Gtf2a1l	A	G	17: 89,019,020 (GRCm39)	D368G	probably benign	Het
Herc2	G	C	7: 55,813,659 (GRCm39)		probably null	Het
Hycc1	T	C	5: 24,184,572 (GRCm39)	Q302R	possibly damaging	Het
Ins2	T	A	7: 142,233,185 (GRCm39)	H29L	probably damaging	Het
Ipo13	T	A	4: 117,762,778 (GRCm39)	Y275F	probably benign	Het
Kcnj15	T	A	16: 95,096,483 (GRCm39)	M35K	probably benign	Het
Kif21b	G	A	1: 136,076,421 (GRCm39)	V321M	probably damaging	Het
Lcmt1	T	A	7: 123,029,375 (GRCm39)	Y332*	probably null	Het
Malt1	A	G	18: 65,581,283 (GRCm39)	Q237R	probably benign	Het
Micall1	G	A	15: 79,005,032 (GRCm39)	C168Y	unknown	Het
Muc5ac	A	G	7: 141,360,985 (GRCm39)	K1432R	probably benign	Het
Nacad	A	G	11: 6,551,662 (GRCm39)	S510P	probably benign	Het
Nub1	T	C	5: 24,897,965 (GRCm39)	L117P	possibly damaging	Het
Or10al3	T	C	17: 38,012,434 (GRCm39)	L291P	probably damaging	Het
Or5af1	A	G	11: 58,722,852 (GRCm39)	R291G	probably damaging	Het
Or8g24	A	T	9: 38,989,271 (GRCm39)	F257I	possibly damaging	Het
Pkdrej	T	C	15: 85,705,268 (GRCm39)	K223E	probably benign	Het
Prkdc	T	A	16: 15,657,044 (GRCm39)	Y4046*	probably null	Het
Prpf8	A	G	11: 75,394,257 (GRCm39)	N1767D	probably benign	Het
Prr27	C	A	5: 87,990,994 (GRCm39)	P202Q	probably benign	Het
R3hdm2	G	T	10: 127,280,182 (GRCm39)	M18I	unknown	Het
Rab35	C	A	5: 115,778,224 (GRCm39)	D63E	probably damaging	Het
Ribc2	T	A	15: 85,027,568 (GRCm39)	Y350N	probably benign	Het
Sec63	A	G	10: 42,704,944 (GRCm39)	I733V	probably benign	Het
Slc23a3	ATT	ATTT	1: 75,109,925 (GRCm39)		probably null	Het
Stk35	G	A	2: 129,642,605 (GRCm39)	V49I	probably benign	Het
Tango6	A	G	8: 107,576,911 (GRCm39)	E1055G	probably damaging	Het
Tas2r140	A	G	6: 40,469,036 (GRCm39)	I289V	probably benign	Het
Thoc2l	T	C	5: 104,667,101 (GRCm39)	V541A	probably benign	Het
Tll2	C	T	19: 41,119,084 (GRCm39)	V215M	probably damaging	Het
Tmem30a	A	T	9: 79,687,874 (GRCm39)	N98K	probably benign	Het
Trav9n-4	C	A	14: 53,532,290 (GRCm39)	A48E	probably benign	Het
Vinac1	A	T	2: 128,880,499 (GRCm39)	S476T		Het
Vmn1r192	A	G	13: 22,372,010 (GRCm39)	F70S	probably damaging	Het
Wdr89	A	G	12: 75,680,026 (GRCm39)	V76A	probably damaging	Het
Zfp229	A	T	17: 21,965,275 (GRCm39)	T502S	probably damaging	Het

Other mutations in Slc38a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00090:Slc38a4	APN	15	96,917,690 (GRCm39)	missense	probably benign	0.01
IGL00229:Slc38a4	APN	15	96,897,375 (GRCm39)	missense	probably damaging	0.99
IGL00974:Slc38a4	APN	15	96,897,397 (GRCm39)	missense	probably benign	0.05
IGL01951:Slc38a4	APN	15	96,917,644 (GRCm39)	missense	probably benign	0.07
R0012:Slc38a4	UTSW	15	96,897,510 (GRCm39)	missense	probably damaging	1.00
R0012:Slc38a4	UTSW	15	96,897,510 (GRCm39)	missense	probably damaging	1.00
R0165:Slc38a4	UTSW	15	96,906,830 (GRCm39)	missense	probably benign	0.00
R0304:Slc38a4	UTSW	15	96,906,335 (GRCm39)	missense	probably damaging	1.00
R0543:Slc38a4	UTSW	15	96,914,720 (GRCm39)	missense	possibly damaging	0.52
R0973:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R0973:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R0974:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R1340:Slc38a4	UTSW	15	96,908,153 (GRCm39)	splice site	probably benign
R1973:Slc38a4	UTSW	15	96,897,478 (GRCm39)	missense	probably benign	0.36
R2058:Slc38a4	UTSW	15	96,906,606 (GRCm39)	missense	probably benign	0.22
R2083:Slc38a4	UTSW	15	96,906,874 (GRCm39)	missense	probably benign	0.00
R2108:Slc38a4	UTSW	15	96,906,878 (GRCm39)	missense	probably benign
R3908:Slc38a4	UTSW	15	96,910,875 (GRCm39)	critical splice acceptor site	probably null
R4037:Slc38a4	UTSW	15	96,894,923 (GRCm39)	missense	probably benign	0.03
R4259:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4260:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4261:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4370:Slc38a4	UTSW	15	96,906,965 (GRCm39)	missense	possibly damaging	0.48
R4435:Slc38a4	UTSW	15	96,906,899 (GRCm39)	missense	probably benign
R5289:Slc38a4	UTSW	15	96,908,229 (GRCm39)	missense	possibly damaging	0.72
R5638:Slc38a4	UTSW	15	96,910,871 (GRCm39)	missense	probably damaging	0.99
R5893:Slc38a4	UTSW	15	96,897,432 (GRCm39)	missense	probably benign	0.23
R7059:Slc38a4	UTSW	15	96,906,895 (GRCm39)	nonsense	probably null
R7223:Slc38a4	UTSW	15	96,908,226 (GRCm39)	missense	probably damaging	1.00
R7267:Slc38a4	UTSW	15	96,903,781 (GRCm39)	missense	probably benign	0.01
R7768:Slc38a4	UTSW	15	96,906,545 (GRCm39)	missense	probably damaging	1.00
R7903:Slc38a4	UTSW	15	96,906,809 (GRCm39)	missense	probably benign	0.03
R8314:Slc38a4	UTSW	15	96,908,190 (GRCm39)	missense	probably benign	0.10
R8385:Slc38a4	UTSW	15	96,897,393 (GRCm39)	missense	probably damaging	1.00
R8822:Slc38a4	UTSW	15	96,906,952 (GRCm39)	missense	probably benign	0.12
R8955:Slc38a4	UTSW	15	96,914,662 (GRCm39)	missense	probably benign
R8962:Slc38a4	UTSW	15	96,917,684 (GRCm39)	missense	probably benign	0.00
R9000:Slc38a4	UTSW	15	96,897,475 (GRCm39)	missense	possibly damaging	0.48
R9043:Slc38a4	UTSW	15	96,906,805 (GRCm39)	missense	possibly damaging	0.93
R9786:Slc38a4	UTSW	15	96,906,378 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TTACCACGCCAGCATTTACC -3'
(R):5'- CTGTTTGTCCTGAAGCCTGG -3'

Sequencing Primer
(F):5'- TTGTTACTTGAAGGAGAGAAACCC -3'
(R):5'- TGGGCCTGCAGAAACCTTC -3'

Posted On

2022-11-14