Mutagenetix > Incidental Mutation

Incidental Mutation 'R7223:Slc38a4'

561975

Institutional Source

Beutler Lab

Gene Symbol

Slc38a4

Ensembl Gene

ENSMUSG00000022464

Gene Name

solute carrier family 38, member 4

Synonyms

Ata3, SNAT4, 1700012A18Rik, 1110012E16Rik

MMRRC Submission

045295-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.173) question?

Stock #

R7223 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

96892701-96953837 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 96908226 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 172 (I172V)

Ref Sequence

ENSEMBL: ENSMUSP00000023101 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023101] [ENSMUST00000166223] [ENSMUST00000230086] [ENSMUST00000230907] [ENSMUST00000231039]

AlphaFold

Q8R1S9

Predicted Effect

probably damaging
Transcript: ENSMUST00000023101
AA Change: I172V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000023101
Gene: ENSMUSG00000022464
AA Change: I172V

Domain	Start	End	E-Value	Type
Pfam:Aa_trans	73	263	4.9e-38	PFAM
Pfam:Aa_trans	302	535	2.1e-45	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000166223
AA Change: I172V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000127676
Gene: ENSMUSG00000022464
AA Change: I172V

Domain	Start	End	E-Value	Type
Pfam:Aa_trans	73	262	2.5e-38	PFAM
Pfam:Aa_trans	303	535	2.5e-45	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000230086
AA Change: I172V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably benign
Transcript: ENSMUST00000230907

Predicted Effect

probably damaging
Transcript: ENSMUST00000231039
AA Change: I172V

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SLC38A4 is found predominantly in liver and transports both cationic and neutral amino acids. The transport of cationic amino acids by SLC38A4 is Na(+) and pH independent, while the transport of neutral amino acids is Na(+) and pH dependent (Hatanaka et al., 2001 [PubMed 11342143]).[supplied by OMIM, Mar 2008]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	A	T	2: 69,104,487 (GRCm39)	V733E	probably benign	Het
Adam34	A	T	8: 44,105,041 (GRCm39)	N201K	probably benign	Het
Aldh3b2	A	C	19: 4,029,592 (GRCm39)	S322R	probably damaging	Het
Anpep	A	T	7: 79,475,058 (GRCm39)	L914Q	probably damaging	Het
Arhgap30	T	C	1: 171,235,139 (GRCm39)	F535S	probably damaging	Het
Baiap3	G	A	17: 25,462,814 (GRCm39)	R1075C	probably benign	Het
Baz2a	G	T	10: 127,948,475 (GRCm39)	G252V	probably damaging	Het
Brinp3	T	A	1: 146,776,812 (GRCm39)	S420T	possibly damaging	Het
Carmil3	T	C	14: 55,733,695 (GRCm39)	F359S	possibly damaging	Het
Ccdc124	A	T	8: 71,321,170 (GRCm39)	L190Q	probably damaging	Het
Ccr6	T	C	17: 8,474,972 (GRCm39)	V59A	probably damaging	Het
Ccr8	T	A	9: 119,923,683 (GRCm39)	I266N	probably damaging	Het
Cdh23	T	A	10: 60,167,596 (GRCm39)	E1798V	probably damaging	Het
Cdk5rap2	T	C	4: 70,153,684 (GRCm39)	N1713S	probably benign	Het
Cep19	T	A	16: 31,922,833 (GRCm39)	I33N	probably damaging	Het
Cers3	A	T	7: 66,433,163 (GRCm39)	Y196F	probably damaging	Het
Cidea	T	C	18: 67,499,491 (GRCm39)	I126T	probably damaging	Het
Copg2	A	T	6: 30,789,689 (GRCm39)	Y546*	probably null	Het
Cul3	A	T	1: 80,264,717 (GRCm39)	V261E	probably benign	Het
Cyp2g1	A	T	7: 26,514,057 (GRCm39)	D221V	probably damaging	Het
Cyp8b1	G	A	9: 121,744,163 (GRCm39)	H390Y	probably damaging	Het
Daam1	T	C	12: 72,035,717 (GRCm39)	F971L	probably damaging	Het
Dnajc24	G	A	2: 105,832,311 (GRCm39)	S24L	possibly damaging	Het
Dpysl3	T	C	18: 43,571,107 (GRCm39)	S56G	probably benign	Het
Esp1	A	G	17: 41,041,972 (GRCm39)	D88G	probably benign	Het
Fam171b	A	G	2: 83,708,574 (GRCm39)	T359A	probably damaging	Het
Fam186b	T	C	15: 99,177,718 (GRCm39)	E536G	possibly damaging	Het
Fbxo3	T	C	2: 103,873,357 (GRCm39)	V156A	possibly damaging	Het
Gls2	C	A	10: 128,035,063 (GRCm39)	H65Q	probably benign	Het
Gp2	A	G	7: 119,050,721 (GRCm39)		probably null	Het
Gpcpd1	T	A	2: 132,375,976 (GRCm39)	K435I	probably benign	Het
Gpx6	T	A	13: 21,501,840 (GRCm39)		probably null	Het
Hps3	A	T	3: 20,084,583 (GRCm39)	S202T	probably benign	Het
Htr1d	T	A	4: 136,170,812 (GRCm39)	L347H	probably damaging	Het
Igfals	T	C	17: 25,100,208 (GRCm39)	L433P	probably damaging	Het
Ilvbl	C	T	10: 78,419,530 (GRCm39)	H537Y	probably benign	Het
Iqgap2	A	T	13: 95,765,480 (GRCm39)	M1530K	probably damaging	Het
Jarid2	A	G	13: 45,049,798 (GRCm39)	T247A	possibly damaging	Het
L3hypdh	C	T	12: 72,120,783 (GRCm39)	V323I	possibly damaging	Het
Lama3	C	T	18: 12,715,665 (GRCm39)	T1707I	possibly damaging	Het
Map6	G	T	7: 98,917,232 (GRCm39)	A2S	probably damaging	Het
Mfap3	T	A	11: 57,421,066 (GRCm39)	I349K	probably benign	Het
Mybl2	A	G	2: 162,914,625 (GRCm39)	T248A	probably benign	Het
N6amt1	A	G	16: 87,159,548 (GRCm39)	*151W	probably null	Het
Nhlrc1	A	G	13: 47,167,684 (GRCm39)	V191A	probably benign	Het
Nkx2-5	T	C	17: 27,058,594 (GRCm39)	E120G	possibly damaging	Het
Or2y10	T	A	11: 49,454,925 (GRCm39)	M59K	probably damaging	Het
Or52r1b	C	A	7: 102,690,839 (GRCm39)	T46N	possibly damaging	Het
Or8b41	T	C	9: 38,055,049 (GRCm39)	V201A	probably benign	Het
Or8k28	T	A	2: 86,286,211 (GRCm39)	I135F	possibly damaging	Het
Pcdha8	T	G	18: 37,126,201 (GRCm39)	L228V	probably benign	Het
Pcsk2	A	G	2: 143,532,253 (GRCm39)	T134A	possibly damaging	Het
Phldb3	G	A	7: 24,324,078 (GRCm39)	R484Q	probably benign	Het
Pipox	A	G	11: 77,772,012 (GRCm39)	S371P	probably damaging	Het
Plekhg1	T	C	10: 3,823,343 (GRCm39)	S159P		Het
Psme4	C	T	11: 30,824,226 (GRCm39)	P1737S	probably benign	Het
Pygm	G	A	19: 6,438,893 (GRCm39)	D328N	probably benign	Het
Rabgef1	A	T	5: 130,219,801 (GRCm39)	E88V	probably benign	Het
Rims2	G	T	15: 39,300,428 (GRCm39)	R245L	probably benign	Het
Slc4a10	T	A	2: 62,099,009 (GRCm39)	Y586N	probably damaging	Het
Snap91	C	T	9: 86,761,610 (GRCm39)		probably benign	Het
Sorcs1	C	T	19: 50,178,480 (GRCm39)	V881I	probably benign	Het
Spef2	A	T	15: 9,601,726 (GRCm39)	V1512E	unknown	Het
Sufu	T	C	19: 46,441,716 (GRCm39)	I292T	possibly damaging	Het
Tet1	T	C	10: 62,649,450 (GRCm39)	N87D	possibly damaging	Het
Tmem108	T	C	9: 103,376,733 (GRCm39)	T239A	not run	Het
Tmem121	A	T	12: 113,152,114 (GRCm39)	K111*	probably null	Het
Tpp2	T	A	1: 44,008,048 (GRCm39)	D417E	probably damaging	Het
Tpr	G	A	1: 150,315,007 (GRCm39)	E2025K	possibly damaging	Het
Trappc3	C	T	4: 126,168,945 (GRCm39)	A145V	possibly damaging	Het
Ttn	T	C	2: 76,721,325 (GRCm39)	D6754G	probably null	Het
Unc13c	T	A	9: 73,536,473 (GRCm39)	M1627L	probably benign	Het
Ush2a	A	G	1: 188,542,414 (GRCm39)	I3327V	probably benign	Het
Vmn1r74	C	T	7: 11,580,894 (GRCm39)	Q65*	probably null	Het
Wdr18	G	A	10: 79,796,202 (GRCm39)	R69H	probably damaging	Het
Zbed5	G	T	5: 129,929,279 (GRCm39)	D132Y	probably damaging	Het
Zfp644	A	T	5: 106,785,448 (GRCm39)	Y366*	probably null	Het
Zfyve26	T	C	12: 79,292,945 (GRCm39)	N2068S	probably damaging	Het
Zic2	T	C	14: 122,713,503 (GRCm39)	F139S	probably damaging	Het
Zmynd11	T	C	13: 9,760,198 (GRCm39)	Q141R	probably benign	Het
Zrsr2-ps1	A	G	11: 22,923,388 (GRCm39)	E54G	probably benign	Het
Zscan10	G	A	17: 23,828,456 (GRCm39)	D333N	probably benign	Het

Other mutations in Slc38a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00090:Slc38a4	APN	15	96,917,690 (GRCm39)	missense	probably benign	0.01
IGL00229:Slc38a4	APN	15	96,897,375 (GRCm39)	missense	probably damaging	0.99
IGL00974:Slc38a4	APN	15	96,897,397 (GRCm39)	missense	probably benign	0.05
IGL01951:Slc38a4	APN	15	96,917,644 (GRCm39)	missense	probably benign	0.07
R0012:Slc38a4	UTSW	15	96,897,510 (GRCm39)	missense	probably damaging	1.00
R0012:Slc38a4	UTSW	15	96,897,510 (GRCm39)	missense	probably damaging	1.00
R0165:Slc38a4	UTSW	15	96,906,830 (GRCm39)	missense	probably benign	0.00
R0304:Slc38a4	UTSW	15	96,906,335 (GRCm39)	missense	probably damaging	1.00
R0543:Slc38a4	UTSW	15	96,914,720 (GRCm39)	missense	possibly damaging	0.52
R0973:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R0973:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R0974:Slc38a4	UTSW	15	96,903,739 (GRCm39)	missense	probably benign	0.04
R1340:Slc38a4	UTSW	15	96,908,153 (GRCm39)	splice site	probably benign
R1973:Slc38a4	UTSW	15	96,897,478 (GRCm39)	missense	probably benign	0.36
R2058:Slc38a4	UTSW	15	96,906,606 (GRCm39)	missense	probably benign	0.22
R2083:Slc38a4	UTSW	15	96,906,874 (GRCm39)	missense	probably benign	0.00
R2108:Slc38a4	UTSW	15	96,906,878 (GRCm39)	missense	probably benign
R3908:Slc38a4	UTSW	15	96,910,875 (GRCm39)	critical splice acceptor site	probably null
R4037:Slc38a4	UTSW	15	96,894,923 (GRCm39)	missense	probably benign	0.03
R4259:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4260:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4261:Slc38a4	UTSW	15	96,896,374 (GRCm39)	missense	probably damaging	1.00
R4370:Slc38a4	UTSW	15	96,906,965 (GRCm39)	missense	possibly damaging	0.48
R4435:Slc38a4	UTSW	15	96,906,899 (GRCm39)	missense	probably benign
R5289:Slc38a4	UTSW	15	96,908,229 (GRCm39)	missense	possibly damaging	0.72
R5638:Slc38a4	UTSW	15	96,910,871 (GRCm39)	missense	probably damaging	0.99
R5893:Slc38a4	UTSW	15	96,897,432 (GRCm39)	missense	probably benign	0.23
R7059:Slc38a4	UTSW	15	96,906,895 (GRCm39)	nonsense	probably null
R7267:Slc38a4	UTSW	15	96,903,781 (GRCm39)	missense	probably benign	0.01
R7768:Slc38a4	UTSW	15	96,906,545 (GRCm39)	missense	probably damaging	1.00
R7903:Slc38a4	UTSW	15	96,906,809 (GRCm39)	missense	probably benign	0.03
R8314:Slc38a4	UTSW	15	96,908,190 (GRCm39)	missense	probably benign	0.10
R8385:Slc38a4	UTSW	15	96,897,393 (GRCm39)	missense	probably damaging	1.00
R8822:Slc38a4	UTSW	15	96,906,952 (GRCm39)	missense	probably benign	0.12
R8955:Slc38a4	UTSW	15	96,914,662 (GRCm39)	missense	probably benign
R8962:Slc38a4	UTSW	15	96,917,684 (GRCm39)	missense	probably benign	0.00
R9000:Slc38a4	UTSW	15	96,897,475 (GRCm39)	missense	possibly damaging	0.48
R9043:Slc38a4	UTSW	15	96,906,805 (GRCm39)	missense	possibly damaging	0.93
R9760:Slc38a4	UTSW	15	96,896,332 (GRCm39)	missense	probably damaging	1.00
R9786:Slc38a4	UTSW	15	96,906,378 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GTAGTTGCCGTTGAGGTACC -3'
(R):5'- ACGTCTGCTTATGAAGGGGAC -3'

Sequencing Primer
(F):5'- CGTTGAGGTACCATTCCCTAGAAAAG -3'
(R):5'- TACAGAGTACATGGGGCCTTCTC -3'

Posted On

2019-06-26