Mutagenetix > Incidental Mutation

Incidental Mutation 'R9772:Notch4'

733502

Institutional Source

Beutler Lab

Gene Symbol

Notch4

Ensembl Gene

ENSMUSG00000015468

Gene Name

notch 4

Synonyms

Int3, Int-3, N4

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9772 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

34783242-34807477 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

G to T at 34792883 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000015612 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015612] [ENSMUST00000015612] [ENSMUST00000173389]

AlphaFold

P31695

Predicted Effect

probably null
Transcript: ENSMUST00000015612

SMART Domains

Protein: ENSMUSP00000015612
Gene: ENSMUSG00000015468

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
EGF	24	60	3.2e-4	SMART
EGF	64	112	1.07e-5	SMART
EGF	118	152	5.49e-3	SMART
EGF	156	189	9.33e-6	SMART
EGF_CA	191	229	1.42e-10	SMART
EGF	234	271	1.11e-3	SMART
EGF	276	309	1.84e-4	SMART
EGF_CA	311	350	2.52e-11	SMART
EGF_CA	352	388	1.85e-9	SMART
EGF	392	427	1.58e-3	SMART
EGF_CA	429	470	2.46e-14	SMART
EGF_CA	472	508	5.03e-11	SMART
EGF_CA	510	546	6.74e-12	SMART
EGF_CA	548	584	2.98e-13	SMART
EGF_CA	586	622	7.63e-11	SMART
EGF_like	645	686	2.86e1	SMART
EGF	691	724	3.48e-5	SMART
EGF	729	762	3.62e-3	SMART
EGF_CA	764	800	1.48e-8	SMART
EGF	806	839	1.74e-5	SMART
EGF	844	877	2.3e-5	SMART
EGF	881	924	3.59e-7	SMART
EGF_CA	926	962	7.29e-8	SMART
EGF_CA	965	1000	4.42e-7	SMART
EGF_CA	1002	1040	4.56e-9	SMART
EGF	1045	1081	6.16e-6	SMART
EGF	1086	1122	8.65e-1	SMART
EGF	1129	1167	1.45e-2	SMART
NL	1159	1200	6.79e-13	SMART
NL	1203	1242	2.01e-15	SMART
NL	1243	1281	1.85e-14	SMART
NOD	1287	1341	4.37e-8	SMART
NODP	1373	1437	2.12e-6	SMART
transmembrane domain	1441	1463	N/A	INTRINSIC
low complexity region	1525	1539	N/A	INTRINSIC
ANK	1578	1623	2.5e3	SMART
ANK	1628	1657	1.12e-3	SMART
ANK	1661	1691	5.01e-1	SMART
ANK	1695	1724	1.65e-1	SMART
ANK	1728	1757	4.56e-4	SMART
ANK	1761	1790	2.88e-1	SMART
low complexity region	1889	1906	N/A	INTRINSIC
low complexity region	1925	1937	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000015612

SMART Domains

Protein: ENSMUSP00000015612
Gene: ENSMUSG00000015468

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
EGF	24	60	3.2e-4	SMART
EGF	64	112	1.07e-5	SMART
EGF	118	152	5.49e-3	SMART
EGF	156	189	9.33e-6	SMART
EGF_CA	191	229	1.42e-10	SMART
EGF	234	271	1.11e-3	SMART
EGF	276	309	1.84e-4	SMART
EGF_CA	311	350	2.52e-11	SMART
EGF_CA	352	388	1.85e-9	SMART
EGF	392	427	1.58e-3	SMART
EGF_CA	429	470	2.46e-14	SMART
EGF_CA	472	508	5.03e-11	SMART
EGF_CA	510	546	6.74e-12	SMART
EGF_CA	548	584	2.98e-13	SMART
EGF_CA	586	622	7.63e-11	SMART
EGF_like	645	686	2.86e1	SMART
EGF	691	724	3.48e-5	SMART
EGF	729	762	3.62e-3	SMART
EGF_CA	764	800	1.48e-8	SMART
EGF	806	839	1.74e-5	SMART
EGF	844	877	2.3e-5	SMART
EGF	881	924	3.59e-7	SMART
EGF_CA	926	962	7.29e-8	SMART
EGF_CA	965	1000	4.42e-7	SMART
EGF_CA	1002	1040	4.56e-9	SMART
EGF	1045	1081	6.16e-6	SMART
EGF	1086	1122	8.65e-1	SMART
EGF	1129	1167	1.45e-2	SMART
NL	1159	1200	6.79e-13	SMART
NL	1203	1242	2.01e-15	SMART
NL	1243	1281	1.85e-14	SMART
NOD	1287	1341	4.37e-8	SMART
NODP	1373	1437	2.12e-6	SMART
transmembrane domain	1441	1463	N/A	INTRINSIC
low complexity region	1525	1539	N/A	INTRINSIC
ANK	1578	1623	2.5e3	SMART
ANK	1628	1657	1.12e-3	SMART
ANK	1661	1691	5.01e-1	SMART
ANK	1695	1724	1.65e-1	SMART
ANK	1728	1757	4.56e-4	SMART
ANK	1761	1790	2.88e-1	SMART
low complexity region	1889	1906	N/A	INTRINSIC
low complexity region	1925	1937	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000173389

SMART Domains

Protein: ENSMUSP00000133574
Gene: ENSMUSG00000015468

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
EGF	28	64	3.2e-4	SMART
EGF	68	116	1.07e-5	SMART
EGF	122	156	5.49e-3	SMART
EGF	160	193	9.33e-6	SMART
EGF_CA	195	233	1.42e-10	SMART
EGF	238	275	1.11e-3	SMART
EGF	280	313	1.84e-4	SMART
EGF_CA	315	354	2.52e-11	SMART
EGF_CA	356	392	1.85e-9	SMART
EGF	396	431	1.58e-3	SMART
EGF_CA	433	474	2.46e-14	SMART
EGF_CA	476	512	5.03e-11	SMART
EGF_CA	514	550	6.74e-12	SMART
EGF_CA	552	588	2.98e-13	SMART
EGF_CA	590	626	7.63e-11	SMART
EGF_like	649	690	2.86e1	SMART
EGF	695	728	3.48e-5	SMART
EGF	733	766	3.62e-3	SMART
EGF_CA	768	804	1.48e-8	SMART
EGF	810	843	1.74e-5	SMART
EGF	848	881	2.3e-5	SMART
EGF	885	928	3.59e-7	SMART
EGF_like	930	955	7.02e-1	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.8%
10x: 99.4%
20x: 98.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the NOTCH family of proteins. Members of this Type I transmembrane protein family share structural characteristics including an extracellular domain consisting of multiple epidermal growth factor-like (EGF) repeats, and an intracellular domain consisting of multiple different domain types. Notch signaling is an evolutionarily conserved intercellular signaling pathway that regulates interactions between physically adjacent cells through binding of Notch family receptors to their cognate ligands. The encoded preproprotein is proteolytically processed in the trans-Golgi network to generate two polypeptide chains that heterodimerize to form the mature cell-surface receptor. This receptor may play a role in vascular, renal and hepatic development. Mutations in this gene may be associated with schizophrenia. Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for a knock-out allele are viable and fertile but exhibit a slight delay in postnatal retinal angiogenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 39 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl2	A	T	2: 26,985,666 (GRCm39)	I517F	probably benign	Het
Ankdd1a	A	G	9: 65,408,749 (GRCm39)	C506R	probably damaging	Het
Arid3c	T	C	4: 41,724,723 (GRCm39)	N371D	probably damaging	Het
Ccdc117	C	T	11: 5,492,042 (GRCm39)	R6Q	possibly damaging	Het
Ccdc78	C	T	17: 26,005,665 (GRCm39)	R26*	probably null	Het
Clca4a	C	A	3: 144,676,422 (GRCm39)	W86L	probably damaging	Het
Clrn2	C	T	5: 45,611,369 (GRCm39)	Q73*	probably null	Het
Cpne6	A	G	14: 55,754,117 (GRCm39)	D478G	probably benign	Het
Cyp2c40	T	A	19: 39,792,348 (GRCm39)	I199L	probably benign	Het
Dna2	T	C	10: 62,786,522 (GRCm39)	V90A	probably benign	Het
Dydc1	A	G	14: 40,804,248 (GRCm39)	E90G	probably damaging	Het
Egf	A	T	3: 129,499,756 (GRCm39)	S795T	probably benign	Het
Gm13090	G	T	4: 151,175,565 (GRCm39)	A102S	unknown	Het
Hectd4	A	T	5: 121,448,744 (GRCm39)	Y364F	probably benign	Het
Iqgap3	C	A	3: 88,016,176 (GRCm39)	F986L	probably damaging	Het
Krt79	T	G	15: 101,839,196 (GRCm39)	E424D	probably benign	Het
Ltf	T	C	9: 110,869,425 (GRCm39)	S87P	unknown	Het
Mesp2	A	G	7: 79,461,348 (GRCm39)	I224M	possibly damaging	Het
Mettl25	T	C	10: 105,633,127 (GRCm39)	R439G	probably benign	Het
Mettl27	C	T	5: 134,962,390 (GRCm39)	R63W	possibly damaging	Het
Nap1l1	C	T	10: 111,325,911 (GRCm39)	R77*	probably null	Het
Niban2	T	C	2: 32,795,868 (GRCm39)	I48T	probably damaging	Het
Npepps	A	G	11: 97,113,983 (GRCm39)	I631T	probably benign	Het
Or4c105	G	A	2: 88,647,958 (GRCm39)	V148I	probably benign	Het
Or8b51	A	T	9: 38,568,964 (GRCm39)	C241*	probably null	Het
Pacsin3	T	A	2: 91,093,138 (GRCm39)	L210Q	probably damaging	Het
Ppp2r1a	A	T	17: 21,181,855 (GRCm39)	I458F	probably damaging	Het
Ryr2	T	C	13: 11,609,785 (GRCm39)	E4347G	probably benign	Het
Ryr3	A	G	2: 112,657,048 (GRCm39)	I1911T	probably damaging	Het
Sec16a	A	G	2: 26,329,417 (GRCm39)	I866T	possibly damaging	Het
Sfr1	G	T	19: 47,722,019 (GRCm39)	C145F	probably benign	Het
Slc35f4	A	T	14: 49,551,175 (GRCm39)	Y230N	probably damaging	Het
Slx4	A	G	16: 3,818,849 (GRCm39)	V89A		Het
Son	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	AGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCGCAGGAGCCGAACCCCCAGCCG	16: 91,457,222 (GRCm39)		probably benign	Het
Tbc1d23	A	G	16: 56,990,765 (GRCm39)	I671T	probably damaging	Het
Trub1	G	A	19: 57,472,075 (GRCm39)	V184I	probably benign	Het
Usp10	CAA	CAAA	8: 120,658,620 (GRCm39)		probably null	Het
Vit	A	C	17: 78,932,398 (GRCm39)	T502P	probably damaging	Het
Vmn2r15	C	T	5: 109,434,923 (GRCm39)	G594R	probably damaging	Het

Other mutations in Notch4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00904:Notch4	APN	17	34,794,535 (GRCm39)	critical splice donor site	probably null
IGL01022:Notch4	APN	17	34,784,671 (GRCm39)	missense	probably damaging	1.00
IGL01356:Notch4	APN	17	34,800,000 (GRCm39)	missense	possibly damaging	0.67
IGL01634:Notch4	APN	17	34,791,562 (GRCm39)	missense	probably damaging	1.00
IGL02150:Notch4	APN	17	34,803,587 (GRCm39)	missense	probably damaging	1.00
IGL02248:Notch4	APN	17	34,806,172 (GRCm39)	missense	probably damaging	1.00
IGL02271:Notch4	APN	17	34,787,445 (GRCm39)	missense	probably damaging	1.00
IGL02299:Notch4	APN	17	34,796,978 (GRCm39)	missense	probably damaging	1.00
IGL02561:Notch4	APN	17	34,787,134 (GRCm39)	splice site	probably benign
IGL02604:Notch4	APN	17	34,784,362 (GRCm39)	splice site	probably null
IGL03323:Notch4	APN	17	34,801,445 (GRCm39)	missense	probably damaging	1.00
IGL03366:Notch4	APN	17	34,791,542 (GRCm39)	missense	probably damaging	1.00
IGL03408:Notch4	APN	17	34,784,542 (GRCm39)	missense	probably benign	0.03
K3955:Notch4	UTSW	17	34,787,436 (GRCm39)	missense	probably damaging	1.00
R0123:Notch4	UTSW	17	34,784,337 (GRCm39)	missense	possibly damaging	0.85
R0366:Notch4	UTSW	17	34,800,473 (GRCm39)	splice site	probably benign
R0446:Notch4	UTSW	17	34,784,337 (GRCm39)	missense	possibly damaging	0.85
R0490:Notch4	UTSW	17	34,801,864 (GRCm39)	missense	probably damaging	1.00
R0504:Notch4	UTSW	17	34,794,065 (GRCm39)	missense	probably damaging	1.00
R0545:Notch4	UTSW	17	34,802,407 (GRCm39)	missense	probably damaging	1.00
R0702:Notch4	UTSW	17	34,794,177 (GRCm39)	missense	probably damaging	1.00
R0763:Notch4	UTSW	17	34,784,306 (GRCm39)	nonsense	probably null
R0854:Notch4	UTSW	17	34,787,546 (GRCm39)	missense	probably damaging	1.00
R1082:Notch4	UTSW	17	34,806,364 (GRCm39)	missense	probably damaging	1.00
R1196:Notch4	UTSW	17	34,787,837 (GRCm39)	missense	probably damaging	1.00
R1316:Notch4	UTSW	17	34,786,444 (GRCm39)	missense	probably damaging	1.00
R1493:Notch4	UTSW	17	34,786,656 (GRCm39)	nonsense	probably null
R1527:Notch4	UTSW	17	34,784,718 (GRCm39)	missense	probably damaging	1.00
R1548:Notch4	UTSW	17	34,787,396 (GRCm39)	missense	probably damaging	1.00
R1718:Notch4	UTSW	17	34,795,737 (GRCm39)	splice site	probably benign
R1855:Notch4	UTSW	17	34,799,936 (GRCm39)	missense	probably benign	0.05
R1988:Notch4	UTSW	17	34,806,562 (GRCm39)	missense	possibly damaging	0.59
R2022:Notch4	UTSW	17	34,806,502 (GRCm39)	missense	probably damaging	1.00
R2023:Notch4	UTSW	17	34,806,502 (GRCm39)	missense	probably damaging	1.00
R2078:Notch4	UTSW	17	34,787,689 (GRCm39)	critical splice acceptor site	probably null
R2369:Notch4	UTSW	17	34,804,924 (GRCm39)	missense	probably benign	0.15
R3846:Notch4	UTSW	17	34,797,071 (GRCm39)	missense	probably damaging	1.00
R3874:Notch4	UTSW	17	34,797,043 (GRCm39)	nonsense	probably null
R4087:Notch4	UTSW	17	34,803,409 (GRCm39)	missense	probably damaging	1.00
R4456:Notch4	UTSW	17	34,802,807 (GRCm39)	missense	probably damaging	0.99
R4628:Notch4	UTSW	17	34,789,159 (GRCm39)	missense	probably damaging	1.00
R4728:Notch4	UTSW	17	34,789,179 (GRCm39)	missense	probably benign	0.00
R4778:Notch4	UTSW	17	34,801,485 (GRCm39)	missense	possibly damaging	0.95
R4818:Notch4	UTSW	17	34,797,690 (GRCm39)	splice site	probably benign
R4828:Notch4	UTSW	17	34,789,034 (GRCm39)	missense	probably damaging	1.00
R4830:Notch4	UTSW	17	34,789,092 (GRCm39)	missense	probably damaging	1.00
R4859:Notch4	UTSW	17	34,806,154 (GRCm39)	missense	probably damaging	1.00
R4871:Notch4	UTSW	17	34,796,536 (GRCm39)	missense	possibly damaging	0.63
R5090:Notch4	UTSW	17	34,799,894 (GRCm39)	missense	probably damaging	0.99
R5290:Notch4	UTSW	17	34,784,263 (GRCm39)	missense	probably benign	0.01
R5363:Notch4	UTSW	17	34,806,097 (GRCm39)	missense	probably damaging	1.00
R5860:Notch4	UTSW	17	34,801,392 (GRCm39)	missense	probably damaging	1.00
R6352:Notch4	UTSW	17	34,786,435 (GRCm39)	missense	probably damaging	1.00
R6385:Notch4	UTSW	17	34,792,788 (GRCm39)	missense	probably null	0.16
R6422:Notch4	UTSW	17	34,803,533 (GRCm39)	missense	probably benign
R6645:Notch4	UTSW	17	34,806,790 (GRCm39)	missense	probably benign	0.00
R6836:Notch4	UTSW	17	34,805,074 (GRCm39)	missense	probably damaging	0.96
R6943:Notch4	UTSW	17	34,802,577 (GRCm39)	missense	probably benign
R6991:Notch4	UTSW	17	34,803,774 (GRCm39)	nonsense	probably null
R7078:Notch4	UTSW	17	34,801,520 (GRCm39)	missense	possibly damaging	0.94
R7168:Notch4	UTSW	17	34,791,667 (GRCm39)	missense	probably benign	0.05
R7182:Notch4	UTSW	17	34,802,473 (GRCm39)	missense	probably damaging	1.00
R7240:Notch4	UTSW	17	34,795,445 (GRCm39)	missense	probably benign	0.00
R7247:Notch4	UTSW	17	34,791,491 (GRCm39)	missense	probably damaging	1.00
R7556:Notch4	UTSW	17	34,794,444 (GRCm39)	missense	probably damaging	1.00
R7571:Notch4	UTSW	17	34,802,548 (GRCm39)	missense	probably damaging	0.99
R7697:Notch4	UTSW	17	34,789,159 (GRCm39)	missense	probably damaging	1.00
R7763:Notch4	UTSW	17	34,801,392 (GRCm39)	missense	probably damaging	1.00
R7994:Notch4	UTSW	17	34,797,064 (GRCm39)	missense	possibly damaging	0.82
R8139:Notch4	UTSW	17	34,803,774 (GRCm39)	nonsense	probably null
R8171:Notch4	UTSW	17	34,801,483 (GRCm39)	nonsense	probably null
R8375:Notch4	UTSW	17	34,787,228 (GRCm39)	missense	possibly damaging	0.90
R8448:Notch4	UTSW	17	34,805,763 (GRCm39)	splice site	probably null
R8543:Notch4	UTSW	17	34,787,394 (GRCm39)	missense	probably damaging	1.00
R8776:Notch4	UTSW	17	34,806,579 (GRCm39)	missense	probably damaging	1.00
R8776-TAIL:Notch4	UTSW	17	34,806,579 (GRCm39)	missense	probably damaging	1.00
R8847:Notch4	UTSW	17	34,803,962 (GRCm39)	splice site	probably benign
R8885:Notch4	UTSW	17	34,803,470 (GRCm39)	missense	possibly damaging	0.94
R9126:Notch4	UTSW	17	34,800,080 (GRCm39)	missense	probably benign	0.00
R9184:Notch4	UTSW	17	34,806,364 (GRCm39)	missense	probably damaging	1.00
R9425:Notch4	UTSW	17	34,795,801 (GRCm39)	missense	probably benign	0.42
R9434:Notch4	UTSW	17	34,801,673 (GRCm39)	missense	probably damaging	1.00
R9462:Notch4	UTSW	17	34,806,667 (GRCm39)	missense	probably benign	0.00
R9664:Notch4	UTSW	17	34,784,601 (GRCm39)	missense	probably benign	0.07
X0054:Notch4	UTSW	17	34,803,469 (GRCm39)	missense	probably damaging	1.00
X0067:Notch4	UTSW	17	34,805,058 (GRCm39)	nonsense	probably null
Z1088:Notch4	UTSW	17	34,806,889 (GRCm39)	missense	probably damaging	1.00
Z1177:Notch4	UTSW	17	34,806,883 (GRCm39)	missense	probably benign	0.04
Z1177:Notch4	UTSW	17	34,806,882 (GRCm39)	missense	probably damaging	0.97
Z1177:Notch4	UTSW	17	34,794,122 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGGACTTTCTTTCCTCGTAGAC -3'
(R):5'- TGAAGCCAGTCTCCTCTGTG -3'

Sequencing Primer
(F):5'- GTAGACTCATCTCCCCAAACCCTTC -3'
(R):5'- ACCTCCTTTGCGATGCTCAAAC -3'

Posted On

2022-11-14