Mutagenetix > Incidental Mutations

Incidental Mutation 'R1616:Arid1b'

174307

Institutional Source

Beutler Lab

Gene Symbol

Arid1b

Ensembl Gene

ENSMUSG00000069729

Gene Name

AT rich interactive domain 1B (SWI-like)

Synonyms

B230217J03Rik, 9330189K18Rik

MMRRC Submission

039653-MU

Accession Numbers

Ncbi RefSeq: NM_001085355.1; MGI:1926129

Is this an essential gene?

Possibly essential (E-score: 0.724) question?

Stock #

R1616 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

4994332-5347656 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 5339294 bp

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 1705 (I1705N)

Ref Sequence

ENSEMBL: ENSMUSP00000156119 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000092723] [ENSMUST00000115797] [ENSMUST00000115799] [ENSMUST00000232180]

Predicted Effect

probably damaging
Transcript: ENSMUST00000092723
AA Change: I1652N

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000090398
Gene: ENSMUSG00000069729
AA Change: I1652N

Domain	Start	End	E-Value	Type
low complexity region	2	51	N/A	INTRINSIC
low complexity region	69	132	N/A	INTRINSIC
low complexity region	139	150	N/A	INTRINSIC
low complexity region	201	224	N/A	INTRINSIC
low complexity region	232	247	N/A	INTRINSIC
low complexity region	257	276	N/A	INTRINSIC
low complexity region	301	371	N/A	INTRINSIC
low complexity region	379	407	N/A	INTRINSIC
low complexity region	438	476	N/A	INTRINSIC
low complexity region	485	499	N/A	INTRINSIC
low complexity region	538	558	N/A	INTRINSIC
low complexity region	574	591	N/A	INTRINSIC
low complexity region	596	611	N/A	INTRINSIC
low complexity region	615	640	N/A	INTRINSIC
low complexity region	691	707	N/A	INTRINSIC
low complexity region	719	740	N/A	INTRINSIC
low complexity region	743	773	N/A	INTRINSIC
low complexity region	805	816	N/A	INTRINSIC
low complexity region	912	930	N/A	INTRINSIC
low complexity region	936	952	N/A	INTRINSIC
low complexity region	974	985	N/A	INTRINSIC
low complexity region	1036	1045	N/A	INTRINSIC
ARID	1057	1147	9.9e-33	SMART
BRIGHT	1061	1152	7.62e-41	SMART
low complexity region	1166	1177	N/A	INTRINSIC
low complexity region	1257	1268	N/A	INTRINSIC
low complexity region	1336	1364	N/A	INTRINSIC
low complexity region	1426	1456	N/A	INTRINSIC
low complexity region	1473	1486	N/A	INTRINSIC
low complexity region	1579	1595	N/A	INTRINSIC
coiled coil region	1724	1745	N/A	INTRINSIC
low complexity region	1835	1843	N/A	INTRINSIC
Pfam:DUF3518	1933	2189	1.5e-152	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000115797
AA Change: I1653N

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000111463
Gene: ENSMUSG00000069729
AA Change: I1653N

Domain	Start	End	E-Value	Type
low complexity region	17	80	N/A	INTRINSIC
low complexity region	87	98	N/A	INTRINSIC
low complexity region	149	172	N/A	INTRINSIC
low complexity region	180	195	N/A	INTRINSIC
low complexity region	205	224	N/A	INTRINSIC
low complexity region	249	319	N/A	INTRINSIC
low complexity region	327	355	N/A	INTRINSIC
low complexity region	386	424	N/A	INTRINSIC
low complexity region	433	447	N/A	INTRINSIC
low complexity region	486	506	N/A	INTRINSIC
low complexity region	522	539	N/A	INTRINSIC
low complexity region	544	559	N/A	INTRINSIC
low complexity region	563	588	N/A	INTRINSIC
low complexity region	639	655	N/A	INTRINSIC
low complexity region	667	688	N/A	INTRINSIC
low complexity region	691	721	N/A	INTRINSIC
low complexity region	753	764	N/A	INTRINSIC
low complexity region	860	878	N/A	INTRINSIC
low complexity region	884	900	N/A	INTRINSIC
low complexity region	922	933	N/A	INTRINSIC
Blast:ARID	981	1028	1e-8	BLAST
low complexity region	1029	1054	N/A	INTRINSIC
ARID	1058	1148	9.9e-33	SMART
BRIGHT	1062	1153	7.62e-41	SMART
low complexity region	1167	1178	N/A	INTRINSIC
low complexity region	1258	1269	N/A	INTRINSIC
low complexity region	1337	1365	N/A	INTRINSIC
low complexity region	1427	1457	N/A	INTRINSIC
low complexity region	1474	1487	N/A	INTRINSIC
low complexity region	1580	1596	N/A	INTRINSIC
coiled coil region	1725	1746	N/A	INTRINSIC
low complexity region	1836	1844	N/A	INTRINSIC
Pfam:DUF3518	1935	2190	6.3e-121	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000115799
AA Change: I1171N

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000111465
Gene: ENSMUSG00000069729
AA Change: I1171N

Domain	Start	End	E-Value	Type
low complexity region	34	54	N/A	INTRINSIC
low complexity region	70	87	N/A	INTRINSIC
low complexity region	92	107	N/A	INTRINSIC
low complexity region	111	136	N/A	INTRINSIC
low complexity region	187	203	N/A	INTRINSIC
low complexity region	215	236	N/A	INTRINSIC
low complexity region	271	282	N/A	INTRINSIC
low complexity region	378	396	N/A	INTRINSIC
low complexity region	402	418	N/A	INTRINSIC
low complexity region	440	451	N/A	INTRINSIC
Blast:ARID	499	546	1e-8	BLAST
low complexity region	547	572	N/A	INTRINSIC
ARID	576	666	9.9e-33	SMART
BRIGHT	580	671	7.62e-41	SMART
low complexity region	685	696	N/A	INTRINSIC
low complexity region	776	787	N/A	INTRINSIC
low complexity region	855	883	N/A	INTRINSIC
low complexity region	945	975	N/A	INTRINSIC
low complexity region	992	1005	N/A	INTRINSIC
low complexity region	1098	1114	N/A	INTRINSIC
coiled coil region	1243	1264	N/A	INTRINSIC
low complexity region	1354	1362	N/A	INTRINSIC
Pfam:DUF3518	1452	1708	1.1e-152	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000232180
AA Change: I1705N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 98.8%
3x: 97.8%
10x: 94.3%
20x: 85.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This locus encodes an AT-rich DNA interacting domain-containing protein. The encoded protein is a component of the SWI/SNF chromatin remodeling complex and may play a role in cell-cycle activation. The protein encoded by this locus is similar to AT-rich interactive domain-containing protein 1A. These two proteins function as alternative, mutually exclusive ARID-subunits of the SWI/SNF complex. The associated complexes play opposing roles. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2016]

Allele List at MGI

All alleles(61) : Targeted(2) Gene trapped(59)

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933406P04Rik	T	C	10: 20,311,341		probably benign	Het
A1cf	A	G	19: 31,934,775	E430G	probably damaging	Het
Aacs	T	A	5: 125,484,526		probably null	Het
Acot12	G	A	13: 91,772,767	V331I	probably benign	Het
Acp7	A	G	7: 28,611,078	W445R	probably damaging	Het
Actl11	C	A	9: 107,931,936	Q1153K	probably benign	Het
Actr8	A	G	14: 29,982,644	T34A	possibly damaging	Het
Ahnak	A	G	19: 9,008,987	D2545G	possibly damaging	Het
Ap5z1	A	G	5: 142,472,236	Y388C	probably benign	Het
Apol7a	C	T	15: 77,389,606	G219S	probably damaging	Het
Bod1l	T	C	5: 41,808,715	Q2669R	probably benign	Het
Braf	A	T	6: 39,643,133	S504T	probably benign	Het
Cbl	A	T	9: 44,152,900	Y780N	probably damaging	Het
Cd86	T	C	16: 36,628,976	I20V	probably benign	Het
Cep290	T	G	10: 100,568,836	D2353E	probably benign	Het
Ckmt2	G	A	13: 91,859,209	R289C	probably benign	Het
Col3a1	T	C	1: 45,328,488		probably null	Het
Cyp4f16	T	A	17: 32,542,968	Y163*	probably null	Het
Dimt1	T	C	13: 106,953,450	V227A	possibly damaging	Het
Dnah6	A	T	6: 73,100,112	M2338K	probably benign	Het
Dock4	T	G	12: 40,669,045	I274S	probably damaging	Het
Enthd1	T	C	15: 80,452,385	D616G	probably damaging	Het
Fignl2	T	C	15: 101,054,116	E95G	probably damaging	Het
Foxn1	A	G	11: 78,358,866	M611T	probably benign	Het
Foxs1	T	C	2: 152,932,639	S165G	probably benign	Het
Fzd3	G	T	14: 65,235,507	Q271K	probably benign	Het
Hadhb	A	T	5: 30,166,715	I55F	probably damaging	Het
Hipk3	G	A	2: 104,433,745	Q824*	probably null	Het
Hps1	G	A	19: 42,767,185	R201W	probably damaging	Het
Kif21b	T	C	1: 136,171,685	S1477P	probably damaging	Het
Kif26a	A	T	12: 112,157,246		probably null	Het
Krt90	T	C	15: 101,560,591	E172G	possibly damaging	Het
Lama4	T	G	10: 39,075,450	F1064V	probably damaging	Het
Leng9	A	G	7: 4,148,903	V258A	probably benign	Het
Lgi2	A	C	5: 52,546,638	V217G	probably benign	Het
Lpgat1	T	C	1: 191,763,629	I310T	possibly damaging	Het
Ltbp3	A	G	19: 5,746,967	Y374C	probably damaging	Het
Magi2	C	A	5: 20,609,326	T1075K	probably damaging	Het
Man2c1	T	C	9: 57,135,509	I221T	probably benign	Het
Mydgf	A	G	17: 56,179,415	M72T	possibly damaging	Het
Myo1b	T	C	1: 51,776,315	N624S	probably damaging	Het
Myo5c	T	A	9: 75,296,017	M1465K	probably damaging	Het
Nek4	A	T	14: 30,987,137	D716V	probably damaging	Het
Nfxl1	T	A	5: 72,529,037	Q607L	probably benign	Het
Nlrp9c	A	T	7: 26,384,437	D572E	probably benign	Het
Nop14	G	T	5: 34,650,413	Q402K	possibly damaging	Het
Npy5r	C	G	8: 66,681,400	C247S	probably damaging	Het
Nrap	T	A	19: 56,389,823	I19F	probably damaging	Het
Olfr1189	A	G	2: 88,592,008	D68G	probably damaging	Het
Olfr1336	T	G	7: 6,460,745	S79A	probably damaging	Het
Olfr574	T	A	7: 102,948,514	N16K	probably damaging	Het
Pcdh9	A	T	14: 93,886,969	Y588*	probably null	Het
Ppp1r12a	A	G	10: 108,260,867	E183G	probably damaging	Het
Ppp2r2b	T	A	18: 42,688,310	H261L	probably benign	Het
Ptch1	G	T	13: 63,539,842	T374K	possibly damaging	Het
Ptpn13	A	T	5: 103,565,237	N1742I	possibly damaging	Het
Rab33a	C	T	X: 48,519,644	S15L	probably benign	Het
Ralb	T	C	1: 119,478,014	Y75C	probably damaging	Het
Rassf7	T	A	7: 141,216,732	V2D	probably damaging	Het
Rbm10	A	G	X: 20,645,991	N397S	probably benign	Het
Rbm15	T	C	3: 107,330,881	T734A	probably benign	Het
Rbm8a	G	T	3: 96,631,730		probably benign	Het
Rock2	T	C	12: 16,972,985	I1095T	probably benign	Het
Rxfp3	T	A	15: 11,036,303	T328S	probably damaging	Het
Sec31a	T	A	5: 100,386,195	K505N	possibly damaging	Het
Selenof	A	G	3: 144,596,881	*122W	probably null	Het
Sh3pxd2b	T	C	11: 32,381,441	M55T	possibly damaging	Het
Slc15a2	T	C	16: 36,754,481	D522G	probably benign	Het
Slc2a1	T	C	4: 119,136,306	F447L	probably damaging	Het
Slc45a2	T	A	15: 11,022,128	C319S	probably null	Het
Smad4	T	C	18: 73,640,262	D551G	probably benign	Het
Smarcc2	A	G	10: 128,482,793	Y648C	probably damaging	Het
Snrnp40	C	G	4: 130,378,043		probably null	Het
Stab2	A	T	10: 86,885,718		probably null	Het
Tanc1	A	G	2: 59,785,387	D246G	probably damaging	Het
Tekt3	T	G	11: 63,087,198		probably null	Het
Them5	G	A	3: 94,346,260		probably null	Het
Tlr4	T	A	4: 66,839,480	F170Y	probably damaging	Het
Tmem214	T	G	5: 30,871,563	Y165*	probably null	Het
Tmem94	T	C	11: 115,796,145		probably null	Het
Tom1l1	A	G	11: 90,656,351	L301S	possibly damaging	Het
Trpm3	A	G	19: 22,982,712	E1237G	probably damaging	Het
Ube2d1	C	A	10: 71,256,693	C107F	probably damaging	Het
Ugt3a1	C	T	15: 9,306,244	R160*	probably null	Het
Vcan	G	A	13: 89,705,663	P393S	probably damaging	Het
Virma	T	C	4: 11,544,954	F1638L	probably damaging	Het
Vmn1r31	G	A	6: 58,472,058	T274I	probably damaging	Het
Xylt2	C	T	11: 94,668,209	S445N	probably damaging	Het
Zfp457	A	G	13: 67,296,311	F43L	possibly damaging	Het
Zfp879	T	A	11: 50,832,646	M455L	probably benign	Het

Other mutations in Arid1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00325:Arid1b	APN	17	5337110	missense	possibly damaging	0.77
IGL00340:Arid1b	APN	17	5321284	missense	probably damaging	1.00
IGL00886:Arid1b	APN	17	5126979	missense	probably damaging	0.99
IGL01161:Arid1b	APN	17	5342399	missense	probably damaging	1.00
IGL01391:Arid1b	APN	17	5318858	splice site	probably benign
IGL01456:Arid1b	APN	17	5291235	missense	probably damaging	1.00
IGL02152:Arid1b	APN	17	5313968	missense	probably damaging	1.00
IGL02288:Arid1b	APN	17	5264040	missense	possibly damaging	0.88
IGL02713:Arid1b	APN	17	5343011	missense	probably damaging	1.00
IGL02858:Arid1b	APN	17	5341891	missense	possibly damaging	0.92
IGL02885:Arid1b	APN	17	5342153	missense	probably damaging	1.00
IGL02989:Arid1b	APN	17	5335047	missense	probably damaging	1.00
FR4449:Arid1b	UTSW	17	4995589	small insertion	probably benign
PIT4142001:Arid1b	UTSW	17	5339243	missense	probably damaging	1.00
R0048:Arid1b	UTSW	17	5314034	critical splice donor site	probably null
R0124:Arid1b	UTSW	17	5339330	missense	probably damaging	1.00
R0153:Arid1b	UTSW	17	5342932	missense	probably damaging	1.00
R0465:Arid1b	UTSW	17	4996260	missense	possibly damaging	0.68
R0825:Arid1b	UTSW	17	5342178	missense	probably damaging	1.00
R1172:Arid1b	UTSW	17	5339300	missense	probably damaging	1.00
R1468:Arid1b	UTSW	17	5242922	missense	probably damaging	0.99
R1468:Arid1b	UTSW	17	5242922	missense	probably damaging	0.99
R1754:Arid1b	UTSW	17	5279201	critical splice acceptor site	probably null
R1760:Arid1b	UTSW	17	5341813	missense	probably damaging	0.97
R1812:Arid1b	UTSW	17	5337029	missense	probably benign	0.10
R1911:Arid1b	UTSW	17	5342966	missense	probably damaging	1.00
R3874:Arid1b	UTSW	17	5336515	splice site	probably null
R3913:Arid1b	UTSW	17	5342257	missense	possibly damaging	0.94
R3916:Arid1b	UTSW	17	5342653	missense	probably benign	0.25
R3922:Arid1b	UTSW	17	5343041	missense	probably damaging	0.97
R4119:Arid1b	UTSW	17	4995794	unclassified	probably benign
R4290:Arid1b	UTSW	17	5040663	missense	probably damaging	1.00
R4291:Arid1b	UTSW	17	5040663	missense	probably damaging	1.00
R4352:Arid1b	UTSW	17	5097584	missense	possibly damaging	0.93
R4386:Arid1b	UTSW	17	4994972	unclassified	probably benign
R4458:Arid1b	UTSW	17	5242916	missense	probably damaging	0.99
R4524:Arid1b	UTSW	17	5097620	missense	possibly damaging	0.93
R4622:Arid1b	UTSW	17	4995050	unclassified	probably benign
R4723:Arid1b	UTSW	17	5337290	missense	probably benign	0.01
R4782:Arid1b	UTSW	17	5339221	missense	probably damaging	1.00
R4799:Arid1b	UTSW	17	5339221	missense	probably damaging	1.00
R4910:Arid1b	UTSW	17	5342203	missense	probably damaging	1.00
R4946:Arid1b	UTSW	17	5342843	missense	probably damaging	0.99
R5083:Arid1b	UTSW	17	5314018	missense	possibly damaging	0.54
R5204:Arid1b	UTSW	17	5343041	missense	probably damaging	0.97
R5347:Arid1b	UTSW	17	5291057	nonsense	probably null
R5553:Arid1b	UTSW	17	5313877	missense	probably damaging	1.00
R5713:Arid1b	UTSW	17	5336816	missense	probably damaging	1.00
R5820:Arid1b	UTSW	17	4996254	missense	possibly damaging	0.96
R5992:Arid1b	UTSW	17	4994956	unclassified	probably benign
R6038:Arid1b	UTSW	17	5336682	missense	probably benign	0.07
R6038:Arid1b	UTSW	17	5336682	missense	probably benign	0.07
R6153:Arid1b	UTSW	17	5242832	missense	probably damaging	1.00
R6222:Arid1b	UTSW	17	5327647	critical splice acceptor site	probably null
R6249:Arid1b	UTSW	17	5279361	missense	possibly damaging	0.61
R6279:Arid1b	UTSW	17	5341999	missense	probably damaging	1.00
R6329:Arid1b	UTSW	17	5337263	nonsense	probably null
R6368:Arid1b	UTSW	17	5332533	missense	possibly damaging	0.64
R6466:Arid1b	UTSW	17	5327678	missense	probably damaging	1.00
R6861:Arid1b	UTSW	17	5327686	missense	possibly damaging	0.93
R7008:Arid1b	UTSW	17	5290979	missense	probably damaging	1.00
R7270:Arid1b	UTSW	17	4996043	missense	unknown
R7514:Arid1b	UTSW	17	5341714	missense	probably benign	0.28
R7519:Arid1b	UTSW	17	4995844	small insertion	probably benign
R7519:Arid1b	UTSW	17	4995853	small insertion	probably benign
R7521:Arid1b	UTSW	17	4995844	small insertion	probably benign
R7521:Arid1b	UTSW	17	4995860	small insertion	probably benign
R7521:Arid1b	UTSW	17	5342590	missense	probably benign	0.06
R7616:Arid1b	UTSW	17	4995386	missense	unknown
R7654:Arid1b	UTSW	17	5291085	missense	possibly damaging	0.46
R7711:Arid1b	UTSW	17	5336820	missense	probably benign	0.28
R7828:Arid1b	UTSW	17	5097668	missense	probably damaging	1.00
R7864:Arid1b	UTSW	17	5342255	missense	probably damaging	1.00
R7947:Arid1b	UTSW	17	5342255	missense	probably damaging	1.00
R7998:Arid1b	UTSW	17	5327684	missense	probably damaging	1.00
RF007:Arid1b	UTSW	17	4995594	small insertion	probably benign
RF008:Arid1b	UTSW	17	4995594	small insertion	probably benign
RF008:Arid1b	UTSW	17	4995595	small insertion	probably benign
RF025:Arid1b	UTSW	17	4995588	small insertion	probably benign
RF025:Arid1b	UTSW	17	4995596	small insertion	probably benign
RF028:Arid1b	UTSW	17	4995598	small insertion	probably benign
RF032:Arid1b	UTSW	17	4995588	small insertion	probably benign
RF033:Arid1b	UTSW	17	4995585	small insertion	probably benign
RF041:Arid1b	UTSW	17	4995595	small insertion	probably benign
RF045:Arid1b	UTSW	17	4995583	small insertion	probably benign
RF046:Arid1b	UTSW	17	4995590	small insertion	probably benign
RF058:Arid1b	UTSW	17	4995583	small insertion	probably benign
X0023:Arid1b	UTSW	17	5342393	missense	probably benign	0.39
X0027:Arid1b	UTSW	17	5342372	nonsense	probably null
Z1177:Arid1b	UTSW	17	4996328	missense	possibly damaging	0.70

Predicted Primers

PCR Primer
(F):5'- TGCTAACGTCAGATGAAGCTGCAC -3'
(R):5'- TGGTTGAAGGCTGCACTACATGAG -3'

Sequencing Primer
(F):5'- TCCAGAGCCGAGGTTCATAA -3'
(R):5'- cacacacacacacacacacac -3'

Posted On

2014-04-24