Mutagenetix > Incidental Mutations

Incidental Mutation 'R1713:Sgsm2'

190797

Institutional Source

Beutler Lab

Gene Symbol

Sgsm2

Ensembl Gene

ENSMUSG00000038351

Gene Name

small G protein signaling modulator 2

Synonyms

D630003G22Rik, Rutbc1

MMRRC Submission

039746-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.214) question?

Stock #

R1713 (G1)

Quality Score

156

Status

Not validated

Chromosome

Chromosomal Location

74849261-74897060 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 74896826 bp

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 19 (E19G)

Ref Sequence

ENSEMBL: ENSMUSP00000080489 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045807] [ENSMUST00000057631] [ENSMUST00000081799] [ENSMUST00000128230] [ENSMUST00000155702]

Predicted Effect

probably benign
Transcript: ENSMUST00000045807

SMART Domains

Protein: ENSMUSP00000039027
Gene: ENSMUSG00000038335

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC
AARP2CN	228	309	1.14e-28	SMART
low complexity region	373	383	N/A	INTRINSIC
low complexity region	407	421	N/A	INTRINSIC
low complexity region	429	452	N/A	INTRINSIC
coiled coil region	453	478	N/A	INTRINSIC
DUF663	486	772	2.6e-179	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000057631
AA Change: E19G

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000050496
Gene: ENSMUSG00000038351
AA Change: E19G

Domain	Start	End	E-Value	Type
RUN	128	188	4.3e-18	SMART
low complexity region	453	476	N/A	INTRINSIC
TBC	563	965	3.57e-34	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000081799
AA Change: E19G

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000080489
Gene: ENSMUSG00000038351
AA Change: E19G

Domain	Start	End	E-Value	Type
RUN	128	188	4.3e-18	SMART
low complexity region	446	453	N/A	INTRINSIC
low complexity region	498	521	N/A	INTRINSIC
TBC	608	1010	3.57e-34	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000128230

SMART Domains

Protein: ENSMUSP00000121384
Gene: ENSMUSG00000038335

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144019

Predicted Effect

probably benign
Transcript: ENSMUST00000155702

SMART Domains

Protein: ENSMUSP00000119868
Gene: ENSMUSG00000038335

Domain	Start	End	E-Value	Type
low complexity region	16	25	N/A	INTRINSIC
low complexity region	39	58	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155785

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

98% (96/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a GTPase activator with activity towards RAB32 and RAB33B, which are regulators of membrane trafficking. The encoded protein inactivates RAB32 and can bind RAB9A-GTP, a protein required for RAB32 activation. [provided by RefSeq, Oct 2016]

Allele List at MGI

Other mutations in this stock

Total: 90 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	T	A	4: 103,270,767	I54F	possibly damaging	Het
Ackr1	A	T	1: 173,332,349	H134Q	probably benign	Het
Agtr1b	A	T	3: 20,316,309	F44L	probably benign	Het
Ahnak	G	A	19: 9,011,809	D3486N	possibly damaging	Het
Akap9	T	C	5: 4,039,345		probably null	Het
Anks6	T	A	4: 47,039,726	Q495L	probably benign	Het
Arpp21	A	G	9: 112,067,169	S684P	probably damaging	Het
Ash1l	A	G	3: 89,076,224	E2911G	probably damaging	Het
Avpi1	C	T	19: 42,124,809	E70K	probably damaging	Het
Btbd17	G	T	11: 114,795,824	P9T	probably benign	Het
C4b	A	G	17: 34,729,271		probably benign	Het
Carm1	T	C	9: 21,586,489	V385A	probably damaging	Het
Casd1	A	G	6: 4,624,104	D299G	probably damaging	Het
Clca1	T	A	3: 145,024,546	K179N	probably benign	Het
Col1a2	T	C	6: 4,538,691	S1204P	unknown	Het
Col24a1	C	T	3: 145,366,869	Q780*	probably null	Het
Cxadr	C	A	16: 78,334,245	N216K	probably damaging	Het
Daam1	C	T	12: 71,895,882	T40I	unknown	Het
Dab2	C	T	15: 6,429,701	P365S	possibly damaging	Het
Dnah1	A	T	14: 31,279,182	I2402N	probably damaging	Het
Dscaml1	T	A	9: 45,752,690	S1954R	possibly damaging	Het
Dync2h1	T	C	9: 7,131,891	T1639A	probably benign	Het
Ebf1	A	T	11: 44,924,566	I336F	probably damaging	Het
Ebna1bp2	A	G	4: 118,625,684	N290S	possibly damaging	Het
Gabra2	A	G	5: 71,014,563	I110T	probably benign	Het
Galk2	A	G	2: 125,931,290	N203S	probably benign	Het
Gria4	T	C	9: 4,424,448	T806A	probably benign	Het
Impg2	A	G	16: 56,260,526	T789A	probably benign	Het
Itga6	A	G	2: 71,787,202	T22A	probably benign	Het
Itgb4	T	A	11: 116,003,489	I1312N	probably damaging	Het
Kdm4c	A	G	4: 74,298,484	D160G	probably benign	Het
Kdr	A	G	5: 75,968,467	V173A	probably benign	Het
Kif14	T	C	1: 136,527,464	S1575P	probably benign	Het
Lcp1	G	A	14: 75,199,444		probably null	Het
Lipe	C	A	7: 25,385,325	S516I	probably damaging	Het
Lrrc61	G	A	6: 48,568,774	R177Q	possibly damaging	Het
Macf1	A	G	4: 123,378,694	I6429T	probably damaging	Het
Map3k4	C	T	17: 12,249,571	E1012K	probably benign	Het
Map3k5	T	C	10: 20,110,847	F936L	possibly damaging	Het
Mllt3	A	T	4: 87,783,664	N497K	probably damaging	Het
Moxd1	G	A	10: 24,281,496	G342D	probably damaging	Het
Mtdh	A	C	15: 34,114,839	Q202H	possibly damaging	Het
Nav1	A	G	1: 135,595,234		probably benign	Het
Nop56	T	C	2: 130,277,966	V109A	possibly damaging	Het
Obscn	T	C	11: 59,079,886	D2540G	probably damaging	Het
Olfr1121	A	T	2: 87,371,946	Y138F	probably damaging	Het
Olfr1495	A	T	19: 13,769,295	T318S	probably benign	Het
Omg	T	C	11: 79,502,853	I60V	probably benign	Het
Osbpl5	G	A	7: 143,694,373	H652Y	probably damaging	Het
Papd7	A	T	13: 69,503,051	I565N	probably benign	Het
Parvb	T	C	15: 84,297,991		probably benign	Het
Pcdhb3	A	C	18: 37,303,322	E780D	probably benign	Het
Pik3c3	A	G	18: 30,323,586	D723G	possibly damaging	Het
Prkdc	T	C	16: 15,795,094	V3172A	probably benign	Het
Psme4	G	T	11: 30,806,310	W272L	probably damaging	Het
Rem1	G	A	2: 152,634,535	V238M	probably damaging	Het
Rhobtb1	A	C	10: 69,272,771	S434R	probably benign	Het
Rhobtb1	G	C	10: 69,272,772	S434T	possibly damaging	Het
Rnf8	T	C	17: 29,634,761	F413S	probably damaging	Het
Rpn2	A	G	2: 157,314,968	N497S	probably damaging	Het
Rsbn1l	G	T	5: 20,951,490	P99Q	probably benign	Het
Serpinb3b	A	T	1: 107,155,434	M246K	probably benign	Het
Shank1	A	G	7: 44,319,737	H352R	unknown	Het
Slc17a7	A	G	7: 45,170,304	I177V	probably benign	Het
Slc28a2	T	A	2: 122,451,013	F228I	probably damaging	Het
Slc35b4	C	T	6: 34,170,549	V35I	probably benign	Het
Slc38a1	T	C	15: 96,578,760	I407V	probably damaging	Het
Slc39a13	A	G	2: 91,063,097	V326A	probably damaging	Het
Slc44a5	T	C	3: 154,239,106	L120P	probably damaging	Het
Slfn3	T	C	11: 83,213,314	I214T	probably damaging	Het
Slitrk3	A	C	3: 73,049,691	S583A	probably benign	Het
Snx14	T	C	9: 88,415,675	Y180C	probably damaging	Het
Sorl1	T	A	9: 41,996,242	K1483I	probably benign	Het
Ssrp1	C	A	2: 85,040,760	H247N	probably damaging	Het
Stk39	A	T	2: 68,307,116		probably benign	Het
Syde1	C	T	10: 78,585,696	G674R	probably damaging	Het
Themis3	G	A	17: 66,555,853	S370L	probably benign	Het
Tll1	T	A	8: 64,101,873	N259Y	probably damaging	Het
Tnip2	T	G	5: 34,503,831		probably benign	Het
Top2b	T	C	14: 16,409,823	V830A	probably benign	Het
Trpm8	T	A	1: 88,365,080	N934K	probably damaging	Het
Ttc14	A	G	3: 33,802,920	Y179C	probably damaging	Het
Ttn	T	G	2: 76,743,621	I17316L	possibly damaging	Het
Tufm	T	C	7: 126,487,699	V52A	probably benign	Het
Vamp8	T	A	6: 72,388,287	N20I	probably benign	Het
Vmn1r170	A	T	7: 23,606,863	H230L	probably benign	Het
Vmn2r50	T	G	7: 10,037,804	T657P	probably damaging	Het
Xirp2	G	A	2: 67,512,418	G1668R	probably benign	Het
Zik1	C	A	7: 10,490,384	R262L	possibly damaging	Het
Zscan25	T	G	5: 145,283,691	Y99D	probably damaging	Het

Other mutations in Sgsm2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01469:Sgsm2	APN	11	74853871	missense	possibly damaging	0.91
IGL02164:Sgsm2	APN	11	74865416	missense	possibly damaging	0.90
IGL02236:Sgsm2	APN	11	74859872	missense	probably damaging	1.00
IGL02330:Sgsm2	APN	11	74858667	missense	probably benign	0.01
IGL02352:Sgsm2	APN	11	74892074	splice site	probably benign
IGL02359:Sgsm2	APN	11	74892074	splice site	probably benign
IGL03061:Sgsm2	APN	11	74851136	missense	probably damaging	1.00
IGL03180:Sgsm2	APN	11	74868575	critical splice donor site	probably null
R0208:Sgsm2	UTSW	11	74868241	missense	probably damaging	1.00
R0433:Sgsm2	UTSW	11	74858190	splice site	probably null
R0517:Sgsm2	UTSW	11	74867651	missense	possibly damaging	0.62
R0755:Sgsm2	UTSW	11	74865497	missense	probably damaging	1.00
R1439:Sgsm2	UTSW	11	74869138	missense	probably benign	0.34
R1527:Sgsm2	UTSW	11	74853848	nonsense	probably null
R1962:Sgsm2	UTSW	11	74892028	missense	probably damaging	1.00
R2189:Sgsm2	UTSW	11	74853082	missense	probably damaging	1.00
R4259:Sgsm2	UTSW	11	74892028	missense	probably damaging	1.00
R4261:Sgsm2	UTSW	11	74892028	missense	probably damaging	1.00
R4408:Sgsm2	UTSW	11	74851766	missense	probably damaging	0.99
R4590:Sgsm2	UTSW	11	74851132	missense	probably damaging	1.00
R6137:Sgsm2	UTSW	11	74850851	missense	probably damaging	1.00
R6162:Sgsm2	UTSW	11	74892021	missense	probably damaging	1.00
R6457:Sgsm2	UTSW	11	74865169	missense	possibly damaging	0.77
R6681:Sgsm2	UTSW	11	74865378	missense	probably damaging	0.99
R6722:Sgsm2	UTSW	11	74865424	missense	probably damaging	1.00
R6986:Sgsm2	UTSW	11	74892041	missense	probably damaging	1.00
R7205:Sgsm2	UTSW	11	74854493	missense	possibly damaging	0.88
R7209:Sgsm2	UTSW	11	74854325	missense	probably damaging	0.98
R7655:Sgsm2	UTSW	11	74865497	missense	probably damaging	1.00
R7656:Sgsm2	UTSW	11	74865497	missense	probably damaging	1.00
R8526:Sgsm2	UTSW	11	74869021	missense	probably benign	0.17

Predicted Primers

PCR Primer
(F):5'- GCAGTACCCGCAATGAATGGGCAA -3'
(R):5'- AGTCGCCATGACAACCGTCCCT -3'

Sequencing Primer
(F):5'- TCGGGTTCTCCAGCAATCG -3'
(R):5'- GCTCGGAAGATGGCTGC -3'

Posted On

2014-05-14