Mutagenetix > Incidental Mutation

Incidental Mutation 'R2269:Hdhd2'

242365

Institutional Source

Beutler Lab

Gene Symbol

Hdhd2

Ensembl Gene

ENSMUSG00000025421

Gene Name

haloacid dehalogenase-like hydrolase domain containing 2

Synonyms

3110052N05Rik, 0610039H12Rik

MMRRC Submission

040269-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R2269 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

77031775-77059867 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 77052866 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 172 (T172M)

Ref Sequence

ENSEMBL: ENSMUSP00000114212 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026485] [ENSMUST00000097521] [ENSMUST00000097522] [ENSMUST00000142456] [ENSMUST00000145634] [ENSMUST00000147332] [ENSMUST00000148955] [ENSMUST00000150990]

AlphaFold

Q3UGR5

PDB Structure

Crystal Structure of Protein from Mouse Mm.236127 [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000026485
AA Change: T172M

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000026485
Gene: ENSMUSG00000025421
AA Change: T172M

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	193	1.1e-21	PFAM
Pfam:HAD_2	167	223	1e-7	PFAM
Pfam:Hydrolase_like	176	251	3.4e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000097521

SMART Domains

Protein: ENSMUSP00000095128
Gene: ENSMUSG00000025421

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	123	4.8e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000097522
AA Change: T172M

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000095129
Gene: ENSMUSG00000025421
AA Change: T172M

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	193	1.4e-21	PFAM
Pfam:HAD_2	161	223	1.1e-7	PFAM
Pfam:Hydrolase_like	176	251	1.3e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000142456

SMART Domains

Protein: ENSMUSP00000118504
Gene: ENSMUSG00000025421

Domain	Start	End	E-Value	Type
Pfam:Yos1	5	66	4.8e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145634
AA Change: T172M

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000123320
Gene: ENSMUSG00000025421
AA Change: T172M

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	193	1.4e-21	PFAM
Pfam:HAD_2	161	223	1.1e-7	PFAM
Pfam:Hydrolase_like	176	251	1.3e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147332

SMART Domains

Protein: ENSMUSP00000116152
Gene: ENSMUSG00000025421

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	123	4.8e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000148955
AA Change: T172M

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000116243
Gene: ENSMUSG00000025421
AA Change: T172M

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	193	1.4e-21	PFAM
Pfam:HAD_2	161	223	1.1e-7	PFAM
Pfam:Hydrolase_like	176	251	1.3e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000150990
AA Change: T172M

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000114212
Gene: ENSMUSG00000025421
AA Change: T172M

Domain	Start	End	E-Value	Type
Pfam:Hydrolase_6	10	193	1.4e-21	PFAM
Pfam:HAD_2	161	223	1.1e-7	PFAM
Pfam:Hydrolase_like	176	251	1.3e-18	PFAM

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.7%

Validation Efficiency

98% (79/81)

MGI Phenotype

PHENOTYPE: Mice homozygous for a transposon insertion results in complete embryonic lethality at E7. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca16	A	G	7: 120,030,383 (GRCm39)	D165G	probably benign	Het
Abca8a	A	C	11: 109,917,718 (GRCm39)	F1574V	probably damaging	Het
Adh6a	A	T	3: 138,034,857 (GRCm39)	I329L	probably benign	Het
Agap2	T	A	10: 126,918,297 (GRCm39)		probably benign	Het
Ager	A	T	17: 34,818,124 (GRCm39)	I185F	probably damaging	Het
Agrn	C	T	4: 156,263,675 (GRCm39)	G173R	probably damaging	Het
Arhgef16	T	A	4: 154,369,490 (GRCm39)	H329L	probably damaging	Het
Astn1	T	C	1: 158,329,669 (GRCm39)	Y175H	probably damaging	Het
Banp	A	G	8: 122,702,662 (GRCm39)	T70A	probably benign	Het
Bcl11b	T	C	12: 107,881,910 (GRCm39)	T802A	possibly damaging	Het
Ces2a	A	T	8: 105,466,822 (GRCm39)	I65F	probably benign	Het
Cflar	G	A	1: 58,780,206 (GRCm39)		probably null	Het
Clec16a	G	A	16: 10,462,650 (GRCm39)	R656H	probably damaging	Het
Cntn1	A	G	15: 92,192,863 (GRCm39)		probably benign	Het
Coasy	A	G	11: 100,976,708 (GRCm39)	T493A	probably benign	Het
Col16a1	C	A	4: 129,946,711 (GRCm39)	H111Q	probably benign	Het
Commd8	A	G	5: 72,322,765 (GRCm39)	W51R	probably damaging	Het
Cyp3a41b	A	T	5: 145,514,976 (GRCm39)	V83D	probably benign	Het
D2hgdh	C	T	1: 93,763,157 (GRCm39)	A314V	probably damaging	Het
Dcun1d4	T	A	5: 73,638,618 (GRCm39)		probably benign	Het
Decr2	C	A	17: 26,302,858 (GRCm39)	V173L	probably benign	Het
Defb11	A	G	8: 22,395,444 (GRCm39)	*78Q	probably null	Het
Dock3	C	A	9: 106,818,525 (GRCm39)	V1190F	probably damaging	Het
Dusp1	A	T	17: 26,726,093 (GRCm39)	I200N	probably damaging	Het
Efna1	G	A	3: 89,183,646 (GRCm39)	A60V	possibly damaging	Het
Egfl8	C	T	17: 34,832,832 (GRCm39)	V253M	probably damaging	Het
Epb41	T	A	4: 131,691,458 (GRCm39)	N623I	probably benign	Het
Fbxw22	C	T	9: 109,213,062 (GRCm39)	R295K	probably benign	Het
Foxn4	T	C	5: 114,393,662 (GRCm39)	T486A	probably damaging	Het
Gbe1	C	T	16: 70,233,840 (GRCm39)	A239V	probably damaging	Het
Gpatch3	C	T	4: 133,311,118 (GRCm39)	A518V	possibly damaging	Het
Gpc6	A	T	14: 118,125,932 (GRCm39)		probably null	Het
Heatr5a	T	C	12: 51,940,528 (GRCm39)	D1444G	possibly damaging	Het
Hnrnpul1	A	G	7: 25,450,299 (GRCm39)	Y138H	probably damaging	Het
Itgal	A	G	7: 126,905,873 (GRCm39)	I352V	possibly damaging	Het
Klhl31	A	G	9: 77,557,440 (GRCm39)	D52G	possibly damaging	Het
Klk1b21	T	C	7: 43,753,863 (GRCm39)	I49T	possibly damaging	Het
Lama2	T	A	10: 26,868,932 (GRCm39)	I2838F	probably damaging	Het
Lrrc43	A	T	5: 123,641,354 (GRCm39)	T513S	probably damaging	Het
Lsmem1	GTACATACATACATACATACATACATACA	GTACATACATACATACATACATACATACATACA	12: 40,235,260 (GRCm39)		probably null	Het
Mamdc2	A	T	19: 23,281,267 (GRCm39)		probably benign	Het
Mpdz	A	G	4: 81,301,628 (GRCm39)	S266P	probably damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Mroh5	T	C	15: 73,664,997 (GRCm39)	N258D	probably benign	Het
Mrpl28	T	C	17: 26,345,285 (GRCm39)	V235A	probably benign	Het
Mtbp	G	A	15: 55,432,556 (GRCm39)		probably null	Het
Mtss2	A	G	8: 111,455,362 (GRCm39)	K92E	possibly damaging	Het
Muc4	C	A	16: 32,754,529 (GRCm38)	H1468N	probably benign	Het
Nav1	A	T	1: 135,399,974 (GRCm39)	L532*	probably null	Het
Or10ak16	A	T	4: 118,751,071 (GRCm39)	R264W	probably damaging	Het
Or1e23	A	G	11: 73,407,309 (GRCm39)	S239P	probably damaging	Het
Or51f1d	G	A	7: 102,701,344 (GRCm39)	V280I	probably benign	Het
Pappa2	A	G	1: 158,684,841 (GRCm39)	M766T	probably damaging	Het
Pkhd1	C	T	1: 20,604,759 (GRCm39)		probably null	Het
Plch2	T	C	4: 155,077,461 (GRCm39)	E423G	probably benign	Het
Prrc1	G	T	18: 57,514,718 (GRCm39)	D312Y	probably damaging	Het
Pxdn	T	A	12: 30,055,774 (GRCm39)	V1220E	probably damaging	Het
Robo1	T	A	16: 72,775,660 (GRCm39)	F728L	probably benign	Het
Rtel1	G	T	2: 180,977,796 (GRCm39)	Q292H	probably benign	Het
Sh3bp4	G	A	1: 89,073,314 (GRCm39)	V721I	possibly damaging	Het
Slc2a10	T	A	2: 165,356,701 (GRCm39)	C120*	probably null	Het
Srd5a2	T	C	17: 74,331,485 (GRCm39)	R171G	probably damaging	Het
Srsf4	T	C	4: 131,624,993 (GRCm39)	V130A	probably damaging	Het
Styk1	T	C	6: 131,289,539 (GRCm39)	E25G	probably benign	Het
Taar8b	T	C	10: 23,967,270 (GRCm39)	N308S	probably damaging	Het
Tbc1d14	A	G	5: 36,700,561 (GRCm39)	L269P	possibly damaging	Het
Tbx1	T	C	16: 18,400,744 (GRCm39)		probably null	Het
Tmem233	G	C	5: 116,189,517 (GRCm39)		probably benign	Het
Tmem252	T	C	19: 24,651,455 (GRCm39)	I8T	probably benign	Het
Vcp	G	A	4: 42,980,833 (GRCm39)	A759V	possibly damaging	Het
Vmn2r107	T	C	17: 20,595,817 (GRCm39)	I790T	possibly damaging	Het
Vmn2r77	T	C	7: 86,460,897 (GRCm39)	V741A	probably benign	Het
Vps13c	T	C	9: 67,828,229 (GRCm39)	V1461A	possibly damaging	Het
Ylpm1	T	A	12: 85,061,824 (GRCm39)	V575E	unknown	Het
Zbp1	T	A	2: 173,060,616 (GRCm39)		probably benign	Het
Zfp280d	C	A	9: 72,209,052 (GRCm39)		probably benign	Het
Zkscan5	A	G	5: 145,142,277 (GRCm39)	Y58C	probably damaging	Het

Other mutations in Hdhd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01063:Hdhd2	APN	18	77,052,969 (GRCm39)	splice site	probably null
IGL01102:Hdhd2	APN	18	77,044,607 (GRCm39)	missense	probably damaging	1.00
R0021:Hdhd2	UTSW	18	77,058,311 (GRCm39)	missense	probably damaging	1.00
R0021:Hdhd2	UTSW	18	77,058,311 (GRCm39)	missense	probably damaging	1.00
R0717:Hdhd2	UTSW	18	77,038,900 (GRCm39)	missense	possibly damaging	0.94
R1958:Hdhd2	UTSW	18	77,052,841 (GRCm39)	missense	probably benign
R2060:Hdhd2	UTSW	18	77,052,738 (GRCm39)	splice site	probably null
R2266:Hdhd2	UTSW	18	77,052,866 (GRCm39)	missense	probably benign	0.00
R2268:Hdhd2	UTSW	18	77,052,866 (GRCm39)	missense	probably benign	0.00
R2871:Hdhd2	UTSW	18	77,042,702 (GRCm39)	missense	probably damaging	1.00
R2871:Hdhd2	UTSW	18	77,042,702 (GRCm39)	missense	probably damaging	1.00
R2872:Hdhd2	UTSW	18	77,042,702 (GRCm39)	missense	probably damaging	1.00
R2872:Hdhd2	UTSW	18	77,042,702 (GRCm39)	missense	probably damaging	1.00
R2873:Hdhd2	UTSW	18	77,042,702 (GRCm39)	missense	probably damaging	1.00
R3788:Hdhd2	UTSW	18	77,042,883 (GRCm39)	critical splice donor site	probably null
R3789:Hdhd2	UTSW	18	77,042,883 (GRCm39)	critical splice donor site	probably null
R5784:Hdhd2	UTSW	18	77,054,841 (GRCm39)	missense	probably damaging	1.00
R7403:Hdhd2	UTSW	18	77,042,736 (GRCm39)	missense	probably benign	0.00
R7406:Hdhd2	UTSW	18	77,031,811 (GRCm39)	missense	probably benign	0.01
R7644:Hdhd2	UTSW	18	77,031,871 (GRCm39)	missense	possibly damaging	0.79
R7849:Hdhd2	UTSW	18	77,052,962 (GRCm39)	missense	probably damaging	1.00
R8992:Hdhd2	UTSW	18	77,058,366 (GRCm39)	missense	possibly damaging	0.62

Predicted Primers

PCR Primer
(F):5'- TGTGAGTGTGAATAAAACCACCG -3'
(R):5'- GGAGATATGTTAGACACAACATCTCTG -3'

Sequencing Primer
(F):5'- GTGTGAATAAAACCACCGAGTAAATC -3'
(R):5'- GTTTTTACAAGAACACACTGCCCATG -3'

Posted On

2014-10-16