Incidental Mutation 'R4042:Rpp40'
ID500475
Institutional Source Beutler Lab
Gene Symbol Rpp40
Ensembl Gene ENSMUSG00000021418
Gene Nameribonuclease P 40 subunit
SynonymsD8Bwg1265e, Rnasep1
MMRRC Submission 040851-MU
Accession Numbers
Is this an essential gene? Probably essential (E-score: 0.914) question?
Stock #R4042 (G1)
Quality Score225
Status Not validated
Chromosome13
Chromosomal Location35893472-35906359 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 35898566 bp
ZygosityHeterozygous
Amino Acid Change Cysteine to Arginine at position 275 (C275R)
Ref Sequence ENSEMBL: ENSMUSP00000134228 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000171686] [ENSMUST00000174230]
Predicted Effect probably benign
Transcript: ENSMUST00000171686
AA Change: C298R

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000130290
Gene: ENSMUSG00000021418
AA Change: C298R

DomainStartEndE-ValueType
Pfam:Ribonuc_P_40 75 346 1.9e-97 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000174230
AA Change: C275R

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000134228
Gene: ENSMUSG00000021418
AA Change: C275R

DomainStartEndE-ValueType
Pfam:Ribonuc_P_40 85 324 1.7e-83 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000174231
SMART Domains Protein: ENSMUSP00000134210
Gene: ENSMUSG00000021418

DomainStartEndE-ValueType
Pfam:Ribonuc_P_40 19 67 1.5e-19 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000174852
Meta Mutation Damage Score 0.1816 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 38 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4430402I18Rik A T 19: 28,945,783 C80S possibly damaging Het
4930415L06Rik A G X: 89,932,303 F96S probably damaging Het
Adamts10 A G 17: 33,549,540 H864R possibly damaging Het
Akap6 A T 12: 53,139,379 probably null Het
Alox5 A G 6: 116,461,018 S3P possibly damaging Het
Bcl2l2 G A 14: 54,884,634 E85K possibly damaging Het
Chd6 A T 2: 160,988,333 I1014N probably damaging Het
Cog1 A T 11: 113,661,010 Q156L probably damaging Het
Col28a1 G A 6: 8,014,678 S909F probably damaging Het
Csmd3 C T 15: 47,614,084 G3339D probably damaging Het
Cst11 A G 2: 148,771,280 S42P probably benign Het
Cyp2d10 C T 15: 82,406,068 R67H probably benign Het
D330045A20Rik C T X: 139,507,003 S364L probably damaging Homo
Fsip2 G T 2: 82,983,552 R3405L probably benign Het
H2-Ab1 T C 17: 34,264,860 V65A probably benign Het
Hdac6 T C X: 7,931,492 T993A probably benign Het
Insrr T A 3: 87,813,827 M1095K probably damaging Het
Itih4 A T 14: 30,895,038 N517I probably damaging Het
Krt10 C T 11: 99,386,993 probably null Het
Mettl16 T A 11: 74,792,292 F187I probably damaging Het
Miga2 T C 2: 30,367,726 I12T possibly damaging Het
Muc5b T C 7: 141,864,887 Y3857H possibly damaging Het
Ncoa1 A G 12: 4,267,871 S165P probably damaging Het
Olfr1432 A T 19: 12,229,312 I83N probably benign Het
Otol1 A G 3: 70,027,779 D368G probably damaging Het
Pdlim2 C T 14: 70,164,779 R296H probably damaging Het
Plxnb1 A G 9: 109,105,173 D823G probably benign Het
Ppme1 A G 7: 100,341,065 S226P probably damaging Het
Prss40 G T 1: 34,560,879 S9* probably null Het
Prune2 T C 19: 17,003,826 probably null Het
Rgl2 C T 17: 33,937,262 R775W probably damaging Het
Rrm2 T C 12: 24,711,451 Y162H probably benign Het
Syne1 T C 10: 5,041,584 M8377V probably benign Het
Uchl4 A C 9: 64,235,557 I107L probably benign Het
Ush1c T C 7: 46,221,528 E276G probably damaging Het
Usp34 C T 11: 23,489,033 P3532S possibly damaging Het
Vcan T A 13: 89,692,543 L1627F probably benign Het
Ythdc1 T C 5: 86,816,524 I76T probably benign Het
Other mutations in Rpp40
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01072:Rpp40 APN 13 35902034 missense probably damaging 1.00
IGL01550:Rpp40 APN 13 35906200 splice site probably null
IGL03028:Rpp40 APN 13 35904511 missense probably damaging 0.99
R0006:Rpp40 UTSW 13 35896735 missense probably damaging 1.00
R0098:Rpp40 UTSW 13 35898987 missense probably benign 0.06
R0098:Rpp40 UTSW 13 35898987 missense probably benign 0.06
R0144:Rpp40 UTSW 13 35901369 missense probably benign 0.00
R0799:Rpp40 UTSW 13 35902051 missense probably benign
R1852:Rpp40 UTSW 13 35896914 missense probably benign 0.06
R2083:Rpp40 UTSW 13 35898992 missense probably benign 0.01
R2129:Rpp40 UTSW 13 35898621 nonsense probably null
R4044:Rpp40 UTSW 13 35898566 missense probably benign 0.00
R4118:Rpp40 UTSW 13 35896804 missense probably damaging 1.00
R5068:Rpp40 UTSW 13 35898698 missense probably benign 0.00
R5181:Rpp40 UTSW 13 35896712 unclassified probably null
R7023:Rpp40 UTSW 13 35898906 missense possibly damaging 0.66
Predicted Primers PCR Primer
(F):5'- GCAAGAATAATTATGACAGGCCCC -3'
(R):5'- ACTCTGGAGTTCATCGCTTGTG -3'

Sequencing Primer
(F):5'- CGGCCTAGTAGTTAAATGCACGTAC -3'
(R):5'- CATCGCTTGTGTTCAGTATGAG -3'
Posted On2017-12-01