Mutagenetix > Incidental Mutation

Incidental Mutation 'R6631:Noct'

525104

Institutional Source

Beutler Lab

Gene Symbol

Noct

Ensembl Gene

ENSMUSG00000023087

Gene Name

nocturnin

Synonyms

Ccr4, Ccrn4l

MMRRC Submission

044753-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.131) question?

Stock #

R6631 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

51131868-51159065 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 51157621 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Arginine at position 320 (C320R)

Ref Sequence

ENSEMBL: ENSMUSP00000130347 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023849] [ENSMUST00000144826] [ENSMUST00000167780] [ENSMUST00000193018] [ENSMUST00000194641]

AlphaFold

O35710

Predicted Effect

probably damaging
Transcript: ENSMUST00000023849
AA Change: C320R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000023849
Gene: ENSMUSG00000023087
AA Change: C320R

Domain	Start	End	E-Value	Type
low complexity region	48	58	N/A	INTRINSIC
Pfam:Exo_endo_phos	144	412	3.6e-31	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000144826
AA Change: C256R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000141416
Gene: ENSMUSG00000023087
AA Change: C256R

Domain	Start	End	E-Value	Type
Pfam:Exo_endo_phos	80	348	6.7e-27	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000167780
AA Change: C320R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000130347
Gene: ENSMUSG00000023087
AA Change: C320R

Domain	Start	End	E-Value	Type
low complexity region	48	58	N/A	INTRINSIC
Pfam:Exo_endo_phos	144	412	5.7e-29	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193018

SMART Domains

Protein: ENSMUSP00000142216
Gene: ENSMUSG00000023087

Domain	Start	End	E-Value	Type
SCOP:d1hd7a_	52	84	4e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000194641

SMART Domains

Protein: ENSMUSP00000141197
Gene: ENSMUSG00000037174

Domain	Start	End	E-Value	Type
Pfam:Elf-1_N	2	108	1.2e-37	PFAM
low complexity region	142	154	N/A	INTRINSIC
low complexity region	172	181	N/A	INTRINSIC
ETS	207	294	1.28e-51	SMART
low complexity region	369	391	N/A	INTRINSIC
low complexity region	423	433	N/A	INTRINSIC

Meta Mutation Damage Score

0.9692

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 93.9%

Validation Efficiency

96% (50/52)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is highly similar to Nocturnin, a gene identified as a circadian clock regulated gene in Xenopus laevis. This protein and Nocturnin protein share similarity with the C-terminal domain of a yeast transcription factor, carbon catabolite repression 4 (CCR4). The mRNA abundance of a similar gene in mouse has been shown to exhibit circadian rhythmicity, which suggests a role for this protein in clock function or as a circadian clock effector. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele are resistant to diet-induced obesity and fatty liver development, show increased circulating glucose levels and increased insulin sensitivity on a standard diet and have impaired glucose tolerance on a high fat diet. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931406C07Rik	A	T	9: 15,203,326 (GRCm39)	N159K	probably damaging	Het
Arhgef10l	T	C	4: 140,245,058 (GRCm39)		probably benign	Het
Atosa	A	G	9: 74,861,107 (GRCm39)	D4G	possibly damaging	Het
Avil	A	G	10: 126,843,618 (GRCm39)	S153G	possibly damaging	Het
C2cd3	G	A	7: 100,067,747 (GRCm39)	D877N	probably damaging	Het
Clca3a2	G	A	3: 144,519,405 (GRCm39)	A257V	probably benign	Het
Cramp1	T	A	17: 25,202,931 (GRCm39)	H366L	probably benign	Het
Cyp2c37	C	T	19: 39,998,287 (GRCm39)	S393L	probably damaging	Het
Defb8	T	A	8: 19,495,950 (GRCm39)	I37L	probably benign	Het
Dennd4b	C	A	3: 90,185,039 (GRCm39)		probably null	Het
Eps8l2	G	A	7: 140,936,115 (GRCm39)	R223H	probably damaging	Het
Erbin	A	G	13: 103,961,400 (GRCm39)	L1302P	probably benign	Het
Exoc3l	A	G	8: 106,021,993 (GRCm39)	W37R	probably damaging	Het
Fap	T	C	2: 62,333,725 (GRCm39)	N668S	probably damaging	Het
Gas7	A	G	11: 67,565,107 (GRCm39)	N250S	probably damaging	Het
H2bc12	T	A	13: 22,220,391 (GRCm39)	V112E	probably damaging	Het
Hivep1	C	A	13: 42,309,956 (GRCm39)	P732Q	probably damaging	Het
Irx4	G	T	13: 73,416,545 (GRCm39)	A314S	probably benign	Het
Itgb8	A	T	12: 119,144,712 (GRCm39)	L332*	probably null	Het
Kctd19	A	G	8: 106,111,960 (GRCm39)		probably null	Het
Kif14	G	A	1: 136,443,697 (GRCm39)	S1290N	probably benign	Het
Klk1b3	C	T	7: 43,850,888 (GRCm39)	T140I	probably benign	Het
Lama1	A	G	17: 68,081,477 (GRCm39)	N1305D	probably benign	Het
Lrp1	A	T	10: 127,410,201 (GRCm39)	V1515E	probably damaging	Het
Man2b1	A	G	8: 85,813,440 (GRCm39)		probably null	Het
Mocos	A	G	18: 24,832,988 (GRCm39)	T818A	probably benign	Het
Mpc2	G	T	1: 165,307,081 (GRCm39)	W94L	probably benign	Het
Mrc1	G	A	2: 14,243,296 (GRCm39)	V141I	probably benign	Het
Nalcn	T	C	14: 123,697,663 (GRCm39)	T538A	probably benign	Het
Ndufs3	G	A	2: 90,732,744 (GRCm39)	T114M	probably damaging	Het
Or5b117	T	A	19: 13,431,185 (GRCm39)	Q232L	probably benign	Het
Pcdha11	G	T	18: 37,138,844 (GRCm39)	A158S	probably damaging	Het
Pcdhga8	T	A	18: 37,860,109 (GRCm39)	D388E	probably benign	Het
Peg3	T	C	7: 6,712,069 (GRCm39)	E1051G	possibly damaging	Het
Phlda2	T	A	7: 143,055,918 (GRCm39)	I104F	probably damaging	Het
Polr2a	A	G	11: 69,626,339 (GRCm39)	S1604P	possibly damaging	Het
Pomt2	C	T	12: 87,186,417 (GRCm39)		probably null	Het
Ppp6r2	G	A	15: 89,137,458 (GRCm39)		probably null	Het
Prdm2	T	G	4: 142,861,454 (GRCm39)	Q612P	probably benign	Het
Prr5	C	A	15: 84,586,978 (GRCm39)	R243S	probably damaging	Het
Ptgdr2	T	C	19: 10,918,233 (GRCm39)	I250T	probably benign	Het
Rad54l2	A	T	9: 106,590,739 (GRCm39)	C462*	probably null	Het
Sec16a	T	A	2: 26,329,969 (GRCm39)	E682V	probably damaging	Het
Serpina3i	A	G	12: 104,232,725 (GRCm39)	D210G	probably damaging	Het
Slain2	T	A	5: 73,114,748 (GRCm39)	D326E	probably benign	Het
Sned1	A	G	1: 93,209,374 (GRCm39)	E829G	probably damaging	Het
Steap4	G	A	5: 8,026,995 (GRCm39)	W319*	probably null	Het
Taar8c	A	G	10: 23,977,701 (GRCm39)	V37A	probably benign	Het
Tdrd12	T	A	7: 35,184,654 (GRCm39)	Y753F	probably damaging	Het
Tnxb	A	G	17: 34,937,222 (GRCm39)	S3770G	probably damaging	Het
Trrap	A	G	5: 144,708,460 (GRCm39)	N48S	possibly damaging	Het
Zfp558	C	A	9: 18,368,219 (GRCm39)	G190*	probably null	Het

Other mutations in Noct

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01544:Noct	APN	3	51,155,469 (GRCm39)	missense	probably damaging	0.99
R0256:Noct	UTSW	3	51,157,895 (GRCm39)	missense	probably damaging	1.00
R1399:Noct	UTSW	3	51,157,897 (GRCm39)	splice site	probably null
R1539:Noct	UTSW	3	51,155,333 (GRCm39)	nonsense	probably null
R1618:Noct	UTSW	3	51,155,251 (GRCm39)	missense	probably damaging	1.00
R2001:Noct	UTSW	3	51,155,465 (GRCm39)	missense	probably damaging	1.00
R2176:Noct	UTSW	3	51,157,117 (GRCm39)	critical splice acceptor site	probably null
R2408:Noct	UTSW	3	51,132,710 (GRCm39)	critical splice donor site	probably null
R4413:Noct	UTSW	3	51,157,756 (GRCm39)	missense	probably damaging	1.00
R4552:Noct	UTSW	3	51,157,589 (GRCm39)	missense	probably benign	0.16
R4690:Noct	UTSW	3	51,155,300 (GRCm39)	nonsense	probably null
R4993:Noct	UTSW	3	51,157,442 (GRCm39)	missense	probably damaging	1.00
R5009:Noct	UTSW	3	51,155,482 (GRCm39)	missense	probably damaging	1.00
R6467:Noct	UTSW	3	51,157,508 (GRCm39)	missense	possibly damaging	0.90
R7454:Noct	UTSW	3	51,157,151 (GRCm39)	missense	probably damaging	1.00
R7467:Noct	UTSW	3	51,132,622 (GRCm39)	missense	probably benign	0.01
R7911:Noct	UTSW	3	51,155,069 (GRCm39)	intron	probably benign
R8201:Noct	UTSW	3	51,155,444 (GRCm39)	missense	probably benign
R9729:Noct	UTSW	3	51,157,267 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTATCAGCAGCACCAATATTAGGC -3'
(R):5'- CCAGATATAGTCCAGCGTGTG -3'

Sequencing Primer
(F):5'- GCAGCACCAATATTAGGCTGACAG -3'
(R):5'- GGATCTTCCAGGTTGTGTA -3'

Posted On

2018-06-22