Mutagenetix > Incidental Mutation

Incidental Mutation 'R7286:Zcchc6'

566042

Institutional Source

Beutler Lab

Gene Symbol

Zcchc6

Ensembl Gene

ENSMUSG00000035248

Gene Name

zinc finger, CCHC domain containing 6

Synonyms

6030448M23Rik

MMRRC Submission

045394-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.731) question?

Stock #

R7286 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

59771561-59823147 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 59821649 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 144 (E144G)

Ref Sequence

ENSEMBL: ENSMUSP00000071623 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071703] [ENSMUST00000225179] [ENSMUST00000225576] [ENSMUST00000225987]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000071703
AA Change: E144G

PolyPhen 2 Score 0.177 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000071623
Gene: ENSMUSG00000035248
AA Change: E144G

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
low complexity region	176	190	N/A	INTRINSIC
ZnF_C2H2	244	268	2.61e1	SMART
SCOP:d1f5aa2	284	497	4e-25	SMART
low complexity region	522	534	N/A	INTRINSIC
Pfam:PAP_assoc	550	603	6.7e-14	PFAM
low complexity region	811	825	N/A	INTRINSIC
low complexity region	846	857	N/A	INTRINSIC
low complexity region	882	898	N/A	INTRINSIC
ZnF_C2HC	960	976	3.3e-3	SMART
Pfam:NTP_transf_2	1022	1134	4e-8	PFAM
Pfam:PAP_assoc	1229	1282	1.7e-17	PFAM
ZnF_C2HC	1342	1358	2.09e-3	SMART
Pfam:TUTF7_u4	1359	1446	1.6e-42	PFAM
ZnF_C2HC	1448	1464	1.06e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000225179
AA Change: E144G

PolyPhen 2 Score 0.326 (Sensitivity: 0.90; Specificity: 0.89)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000225576
AA Change: E144G

PolyPhen 2 Score 0.734 (Sensitivity: 0.85; Specificity: 0.92)

Predicted Effect

probably benign
Transcript: ENSMUST00000225987

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610010F05Rik	A	T	11: 23,622,479	C130S	probably benign	Het
4921501E09Rik	T	C	17: 33,065,527	D767G	probably benign	Het
4930550C14Rik	A	T	9: 53,423,017	M187L	possibly damaging	Het
9930012K11Rik	T	C	14: 70,157,237	E156G	possibly damaging	Het
Acad9	C	T	3: 36,075,990	A194V	probably damaging	Het
Agps	T	A	2: 75,852,784	V151E	probably benign	Het
Ak9	A	T	10: 41,407,371	I1273L		Het
Akr1c19	T	A	13: 4,246,819	L288Q	probably damaging	Het
Carmil1	T	G	13: 24,013,394	D1353A	probably damaging	Het
Ccz1	T	A	5: 144,013,079	I43F	probably damaging	Het
Cep70	G	A	9: 99,275,585	C179Y	probably damaging	Het
Comt	A	T	16: 18,410,690	L196H	probably damaging	Het
Cspg5	A	T	9: 110,246,955	D253V	probably damaging	Het
Dars2	A	G	1: 161,046,808	V437A	possibly damaging	Het
Dcaf5	A	G	12: 80,348,390	I335T	probably damaging	Het
Ddn	T	C	15: 98,806,025	K462R	possibly damaging	Het
Dscaml1	T	C	9: 45,742,746		probably null	Het
Ethe1	A	G	7: 24,607,952	Y197C	probably damaging	Het
Evc	A	T	5: 37,322,183	L269*	probably null	Het
Fam161a	T	C	11: 23,020,001	S60P	possibly damaging	Het
Fam20b	A	G	1: 156,681,442	V400A	probably benign	Het
Fam53b	T	A	7: 132,759,661	S213C	possibly damaging	Het
Flot2	A	G	11: 78,054,786	I45V	probably benign	Het
Gemin4	A	C	11: 76,212,753	L394R	probably damaging	Het
Glis2	T	G	16: 4,611,318	S128R	possibly damaging	Het
Gm3696	A	G	14: 7,089,808	Y92H	probably damaging	Het
Gm49333	T	C	16: 20,632,591	S325P	probably benign	Het
Gpbp1l1	T	C	4: 116,590,245	V374A	probably benign	Het
Grm1	T	C	10: 10,689,696	N956S	probably benign	Het
Hbb-bh1	T	C	7: 103,843,031	E27G	probably damaging	Het
Hmcn1	A	T	1: 150,582,337	C5233S	probably damaging	Het
Hmgcr	C	T	13: 96,666,597	C30Y	probably damaging	Het
Hoxb6	A	G	11: 96,292,825		probably benign	Het
Igf2	T	C	7: 142,655,818	Q35R	possibly damaging	Het
Ighv1-4	C	T	12: 114,487,321	V56I	probably benign	Het
Kif13a	C	T	13: 46,752,455	V671M	possibly damaging	Het
Lmtk2	C	T	5: 144,174,360	Q633*	probably null	Het
Mesd	T	C	7: 83,895,749	Y136H	probably damaging	Het
Mga	T	A	2: 119,964,788	S2984R	possibly damaging	Het
Mkrn3	T	C	7: 62,418,927	N372S	probably benign	Het
Mtpap	A	G	18: 4,387,068	I373V	probably benign	Het
Mycbp2	G	A	14: 103,120,591	T4589M	probably damaging	Het
Myh2	A	G	11: 67,188,369	Q921R	probably benign	Het
Myom1	A	G	17: 71,045,549	D324G	possibly damaging	Het
Nat10	T	C	2: 103,754,169	K88E	probably benign	Het
Ncapd3	A	G	9: 27,069,958	R915G	probably damaging	Het
Nek4	T	C	14: 30,957,292	Y190H	probably damaging	Het
Nfasc	A	C	1: 132,602,052	Y797D	probably damaging	Het
Ngp	A	G	9: 110,420,910	D92G	probably benign	Het
Nos2	A	C	11: 78,929,854	H95P	probably damaging	Het
Nr3c1	ACGTC	ACGTCGTC	18: 39,486,460		probably benign	Het
Olfr1129	C	T	2: 87,575,519	T145I	probably benign	Het
Olfr1350	C	A	7: 6,570,716	H242N	probably damaging	Het
Olfr141	A	T	2: 86,806,623	H125Q	possibly damaging	Het
Olfr498	T	C	7: 108,465,435	I37T	possibly damaging	Het
Otogl	T	A	10: 107,770,610	D2154V	probably benign	Het
Pdss1	T	A	2: 22,935,641		probably null	Het
Pex5	A	T	6: 124,398,063	L609*	probably null	Het
Pglyrp4	C	A	3: 90,732,974	A177D	probably damaging	Het
Phactr4	A	G	4: 132,377,178		probably null	Het
Pik3cd	G	C	4: 149,659,714	N193K	probably benign	Het
Prr36	TACCTCTTC	T	8: 4,215,163		probably benign	Het
Prss38	A	T	11: 59,375,558	W25R	probably benign	Het
Prss8	T	A	7: 127,926,884	Q189L	probably damaging	Het
Psd	T	A	19: 46,314,801	D713V	probably damaging	Het
Rad51ap2	C	T	12: 11,457,691	T538I	probably benign	Het
Rarres1	T	C	3: 67,515,184	T78A	probably benign	Het
Rbl2	G	T	8: 91,102,294	G651*	probably null	Het
Rev3l	A	T	10: 39,823,605	Q1366L	probably damaging	Het
Rundc1	T	C	11: 101,429,587	S215P	probably benign	Het
Scarf2	G	A	16: 17,802,973	W168*	probably null	Het
Sh2d7	A	G	9: 54,540,902	D69G	possibly damaging	Het
Slc26a4	A	T	12: 31,529,528	Y578*	probably null	Het
Slc2a9	A	T	5: 38,453,195	L87Q	probably damaging	Het
Slc39a10	A	T	1: 46,810,070	H795Q	probably damaging	Het
Spata13	C	T	14: 60,756,422	R1108W	probably damaging	Het
Sqle	T	C	15: 59,316,052	S70P	probably benign	Het
Syncrip	A	T	9: 88,464,663	F263I	probably damaging	Het
Synj2	T	C	17: 6,037,945	S1424P	possibly damaging	Het
Tax1bp3	A	T	11: 73,181,115	T89S	possibly damaging	Het
Tcaim	G	A	9: 122,819,027		probably null	Het
Tcp10c	T	C	17: 13,362,176	I240T	possibly damaging	Het
Ttll8	G	T	15: 88,917,239	N415K	probably benign	Het
Ugcg	T	C	4: 59,217,111	S212P	possibly damaging	Het
Vmn2r32	T	C	7: 7,479,808	K56E	probably benign	Het
Vmn2r55	T	C	7: 12,652,073	E660G	probably damaging	Het
Vmn2r7	T	C	3: 64,690,880	N752S	probably benign	Het
Vps54	T	A	11: 21,275,005	M167K	probably benign	Het
Vwa2	A	C	19: 56,909,359	M699L	probably benign	Het
Wdr59	A	G	8: 111,465,862	V689A		Het
Whamm	T	G	7: 81,586,247	N399K	probably damaging	Het
Zfp760	A	G	17: 21,722,779	K312E	probably benign	Het
Zkscan3	C	A	13: 21,394,813	V171L	probably benign	Het

Other mutations in Zcchc6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Zcchc6	APN	13	59816698	missense	probably damaging	1.00
IGL01361:Zcchc6	APN	13	59785800	missense	probably damaging	1.00
IGL02002:Zcchc6	APN	13	59782096	missense	possibly damaging	0.76
IGL02015:Zcchc6	APN	13	59789258	missense	probably damaging	1.00
IGL02029:Zcchc6	APN	13	59784888	unclassified	probably benign
IGL02216:Zcchc6	APN	13	59800423	missense	probably benign	0.01
IGL02705:Zcchc6	APN	13	59789203	missense	probably damaging	1.00
IGL02742:Zcchc6	APN	13	59816342	missense	probably damaging	0.99
IGL02810:Zcchc6	APN	13	59782016	critical splice donor site	probably null
IGL02942:Zcchc6	APN	13	59811521	missense	probably damaging	0.98
IGL03104:Zcchc6	APN	13	59814903	missense	probably benign	0.04
R0025:Zcchc6	UTSW	13	59805328	missense	probably benign	0.08
R0025:Zcchc6	UTSW	13	59805328	missense	probably benign	0.08
R0153:Zcchc6	UTSW	13	59782336	nonsense	probably null
R0269:Zcchc6	UTSW	13	59816855	splice site	probably null
R0358:Zcchc6	UTSW	13	59782104	missense	probably damaging	0.99
R0555:Zcchc6	UTSW	13	59800317	missense	probably benign	0.00
R0599:Zcchc6	UTSW	13	59809487	missense	probably damaging	1.00
R0609:Zcchc6	UTSW	13	59799782	nonsense	probably null
R0617:Zcchc6	UTSW	13	59816855	splice site	probably null
R0680:Zcchc6	UTSW	13	59800599	missense	possibly damaging	0.79
R0699:Zcchc6	UTSW	13	59782014	splice site	probably benign
R1214:Zcchc6	UTSW	13	59805326	missense	possibly damaging	0.76
R1271:Zcchc6	UTSW	13	59821855	missense	probably damaging	0.99
R1556:Zcchc6	UTSW	13	59800240	missense	probably benign	0.02
R1662:Zcchc6	UTSW	13	59799903	missense	possibly damaging	0.93
R1777:Zcchc6	UTSW	13	59791821	missense	probably damaging	1.00
R1834:Zcchc6	UTSW	13	59814935	nonsense	probably null
R1928:Zcchc6	UTSW	13	59816734	missense	probably damaging	1.00
R2012:Zcchc6	UTSW	13	59811538	missense	probably damaging	0.99
R2045:Zcchc6	UTSW	13	59800656	missense	probably damaging	1.00
R2336:Zcchc6	UTSW	13	59799054	missense	probably damaging	1.00
R3764:Zcchc6	UTSW	13	59800380	missense	probably damaging	0.98
R3899:Zcchc6	UTSW	13	59789255	nonsense	probably null
R3918:Zcchc6	UTSW	13	59782024	missense	probably damaging	1.00
R4423:Zcchc6	UTSW	13	59822049	missense	probably damaging	0.96
R4664:Zcchc6	UTSW	13	59800599	missense	possibly damaging	0.79
R4673:Zcchc6	UTSW	13	59796845	missense	probably damaging	1.00
R4770:Zcchc6	UTSW	13	59772884	unclassified	probably benign
R4884:Zcchc6	UTSW	13	59789452	missense	probably damaging	1.00
R5186:Zcchc6	UTSW	13	59816656	critical splice donor site	probably null
R5337:Zcchc6	UTSW	13	59791852	missense	probably damaging	1.00
R5385:Zcchc6	UTSW	13	59789846	critical splice donor site	probably null
R5452:Zcchc6	UTSW	13	59800657	missense	probably damaging	1.00
R5534:Zcchc6	UTSW	13	59788553	missense	probably damaging	1.00
R5566:Zcchc6	UTSW	13	59788629	nonsense	probably null
R5928:Zcchc6	UTSW	13	59822066	missense	probably benign	0.16
R5994:Zcchc6	UTSW	13	59789209	missense	probably damaging	1.00
R6415:Zcchc6	UTSW	13	59816296	splice site	probably null
R6495:Zcchc6	UTSW	13	59799939	missense	possibly damaging	0.95
R6577:Zcchc6	UTSW	13	59808161	missense	probably damaging	1.00
R7205:Zcchc6	UTSW	13	59788550	missense	probably damaging	1.00
R7355:Zcchc6	UTSW	13	59821802	missense	probably benign	0.00
R7369:Zcchc6	UTSW	13	59782053	missense	possibly damaging	0.71
R7455:Zcchc6	UTSW	13	59822057	missense	probably benign	0.03
R7557:Zcchc6	UTSW	13	59788466	missense	possibly damaging	0.89
R7635:Zcchc6	UTSW	13	59800090	missense	probably benign	0.03
R7727:Zcchc6	UTSW	13	59799682	missense	probably benign	0.00
R7798:Zcchc6	UTSW	13	59815575	missense	possibly damaging	0.81
R7912:Zcchc6	UTSW	13	59799005	missense	probably damaging	1.00
R7915:Zcchc6	UTSW	13	59784814	missense	probably benign	0.12
R8035:Zcchc6	UTSW	13	59789190	missense	probably benign	0.00
R8531:Zcchc6	UTSW	13	59789260	missense	probably damaging	1.00
R8777:Zcchc6	UTSW	13	59785783	missense	probably benign	0.15
R8777-TAIL:Zcchc6	UTSW	13	59785783	missense	probably benign	0.15
R8850:Zcchc6	UTSW	13	59789197	missense	possibly damaging	0.83
R8929:Zcchc6	UTSW	13	59800128	missense	probably benign
R9254:Zcchc6	UTSW	13	59788474	missense	possibly damaging	0.48
R9313:Zcchc6	UTSW	13	59799984	missense	probably benign	0.01
R9373:Zcchc6	UTSW	13	59796867	missense	probably damaging	1.00
R9379:Zcchc6	UTSW	13	59788474	missense	possibly damaging	0.48
R9404:Zcchc6	UTSW	13	59799887	missense	probably benign	0.00
R9461:Zcchc6	UTSW	13	59815698	missense	probably damaging	1.00
R9462:Zcchc6	UTSW	13	59782143	missense	possibly damaging	0.89
R9661:Zcchc6	UTSW	13	59789518	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTGCGCAATTATACTGCAAAC -3'
(R):5'- CCCAATTTACAGTCAGCCTGC -3'

Sequencing Primer
(F):5'- ACTCACATTAAAGGGCTCATGACTG -3'
(R):5'- GCCTGCTTGGATGAATGATAACCAC -3'

Posted On

2019-06-26