Mutagenetix > Incidental Mutation

Incidental Mutation 'RF019:Pkhd1l1'

603756

Institutional Source

Beutler Lab

Gene Symbol

Pkhd1l1

Ensembl Gene

ENSMUSG00000038725

Gene Name

polycystic kidney and hepatic disease 1-like 1

Synonyms

fibrocystin L, D86 mRNA, PKHDL1

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

RF019 (G1)

Quality Score

217.468

Status

Not validated

Chromosome

Chromosomal Location

44320890-44464765 bp(+) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

TT to TTTTTTTTTAT at 44421903 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000036988 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038336] [ENSMUST00000166957] [ENSMUST00000209244]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000038336

SMART Domains

Protein: ENSMUSP00000036988
Gene: ENSMUSG00000038725

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IPT	30	141	9.02e-3	SMART
Pfam:TIG	146	255	1.6e-16	PFAM
IPT	269	362	2.27e-8	SMART
PbH1	398	420	2.98e3	SMART
IPT	1066	1154	5.34e-5	SMART
IPT	1156	1235	1.44e-1	SMART
Pfam:TIG	1240	1322	1.1e-13	PFAM
IPT	1328	1407	7.06e0	SMART
Pfam:TIG	1565	1645	5.1e-11	PFAM
IPT	1657	1743	1.89e-5	SMART
Pfam:TIG	1748	1828	2.1e-10	PFAM
IPT	1829	1910	4.87e-8	SMART
IPT	1914	1997	6.84e-3	SMART
IPT	1998	2085	9.86e-1	SMART
IPT	2089	2176	7.21e-11	SMART
PbH1	2105	2126	1.56e3	SMART
G8	2183	2303	2.37e-59	SMART
PbH1	2484	2506	9.48e3	SMART
PbH1	2507	2529	8.45e2	SMART
PbH1	2565	2587	4.11e3	SMART
PbH1	2664	2686	3.5e3	SMART
PbH1	2732	2755	2.7e3	SMART
Blast:G8	2949	2979	1e-5	BLAST
low complexity region	3014	3025	N/A	INTRINSIC
G8	3035	3173	6.5e-57	SMART
PbH1	3292	3314	1.96e3	SMART
PbH1	3354	3376	3.79e1	SMART
PbH1	3415	3437	4.87e2	SMART
PbH1	3470	3492	8.34e3	SMART
PbH1	3493	3514	5.86e3	SMART
low complexity region	3563	3574	N/A	INTRINSIC
low complexity region	4076	4103	N/A	INTRINSIC
low complexity region	4184	4212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000166957

SMART Domains

Protein: ENSMUSP00000129522
Gene: ENSMUSG00000038725

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IPT	30	141	9.02e-3	SMART
Pfam:TIG	146	255	9.4e-18	PFAM
IPT	269	362	2.27e-8	SMART
PbH1	398	420	2.98e3	SMART
IPT	1066	1154	5.34e-5	SMART
IPT	1156	1235	1.44e-1	SMART
Pfam:TIG	1240	1323	3e-13	PFAM
IPT	1328	1407	7.06e0	SMART
Pfam:TIG	1565	1645	3.7e-11	PFAM
IPT	1657	1743	1.89e-5	SMART
Pfam:TIG	1748	1828	9.7e-12	PFAM
IPT	1829	1910	4.87e-8	SMART
IPT	1914	1997	6.84e-3	SMART
IPT	1998	2085	9.86e-1	SMART
IPT	2089	2176	7.21e-11	SMART
PbH1	2105	2126	1.56e3	SMART
G8	2183	2303	2.37e-59	SMART
PbH1	2484	2506	9.48e3	SMART
PbH1	2507	2529	8.45e2	SMART
PbH1	2565	2587	4.11e3	SMART
PbH1	2664	2686	3.5e3	SMART
PbH1	2732	2755	2.7e3	SMART
Blast:G8	2949	2979	1e-5	BLAST
low complexity region	3014	3025	N/A	INTRINSIC
G8	3035	3173	6.5e-57	SMART
PbH1	3292	3314	1.96e3	SMART
PbH1	3354	3376	3.79e1	SMART
PbH1	3415	3437	4.87e2	SMART
PbH1	3470	3492	8.34e3	SMART
PbH1	3493	3514	5.86e3	SMART
low complexity region	3563	3574	N/A	INTRINSIC
low complexity region	4076	4103	N/A	INTRINSIC
low complexity region	4184	4212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000209244

Coding Region Coverage

1x: 99.8%
3x: 99.7%
10x: 99.4%
20x: 98.8%

Validation Efficiency

86% (36/42)

Allele List at MGI

Other mutations in this stock

Total: 31 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310009B15Rik	A	G	1: 138,784,429 (GRCm39)	S43P	probably benign	Het
3110021N24Rik	AGCGCGGCCGGG	AG	4: 108,637,827 (GRCm39)		probably null	Het
Ankrd11	A	G	8: 123,623,373 (GRCm39)	V294A	probably damaging	Het
Ciita	T	A	16: 10,324,611 (GRCm39)	I181N	probably damaging	Het
Col6a1	T	C	10: 76,547,449 (GRCm39)	M675V	unknown	Het
Colec11	A	G	12: 28,662,882 (GRCm39)	V62A	probably benign	Het
Eif3i	T	C	4: 129,494,258 (GRCm39)	T14A	probably damaging	Het
Filip1l	A	G	16: 57,391,004 (GRCm39)	T531A	probably benign	Het
Fscb	GAGGTAGAACTTCTACAGGGGCCTCCTCAGTTGCTGGAGGT	GAGGTAGAACTTCTACAGGGGCCTCCTCAGTTGCTGGAGGTAGAACTTCTACAGGGGCCTCCTCAGTTGCTGGAGGT	12: 64,519,370 (GRCm39)		probably benign	Het
Garre1	A	G	7: 33,939,974 (GRCm39)	F918L	probably damaging	Het
Gpr89	T	C	3: 96,812,509 (GRCm39)	I11V	probably benign	Het
H13	G	A	2: 152,511,589 (GRCm39)	E30K	probably damaging	Het
Hivep3	T	C	4: 119,955,467 (GRCm39)	V1261A	probably benign	Het
Itgad	C	A	7: 127,791,380 (GRCm39)	H751N	probably benign	Het
Krtap28-10	CCACAGCCACAGCCA	CCACAGCCACAGCCAACACAGCCACAGCCA	1: 83,019,990 (GRCm39)		probably benign	Het
L1td1	A	G	4: 98,625,061 (GRCm39)	K419E	not run	Het
Mast4	GGTGGTGGTGG	GGTGGTGGTGGTGGTGG	13: 102,872,815 (GRCm39)		probably benign	Het
Mbtps1	A	T	8: 120,252,289 (GRCm39)	W534R	probably damaging	Het
Myo9a	T	C	9: 59,829,055 (GRCm39)	V2387A	probably benign	Het
Ncapg	C	A	5: 45,856,198 (GRCm39)	P949Q	probably benign	Het
Nuggc	T	C	14: 65,885,713 (GRCm39)	F796S	probably damaging	Het
Otol1	A	T	3: 69,925,933 (GRCm39)	E36V	probably benign	Het
Ralgapa2	A	G	2: 146,203,423 (GRCm39)	I1095T	possibly damaging	Het
Reep1	C	CCGCG	6: 71,684,953 (GRCm39)		probably null	Het
Smarca2	GCAGCA	GCAGCAACAGCA	19: 26,608,401 (GRCm39)		probably benign	Het
Tcf20	T	C	15: 82,735,794 (GRCm39)	I1886V	probably benign	Het
Txnrd1	T	G	10: 82,720,934 (GRCm39)		probably null	Het
Unc5b	A	G	10: 60,618,962 (GRCm39)	V60A	probably damaging	Het
Vmn1r45	A	T	6: 89,910,091 (GRCm39)	V293E	probably damaging	Het
Zfhx4	T	A	3: 5,468,327 (GRCm39)	D2853E	probably benign	Het
Zfp108	G	T	7: 23,961,032 (GRCm39)	R541L	probably benign	Het

Other mutations in Pkhd1l1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00233:Pkhd1l1	APN	15	44,340,982 (GRCm39)	missense	probably damaging	1.00
IGL00235:Pkhd1l1	APN	15	44,419,415 (GRCm39)	missense	probably damaging	1.00
IGL00264:Pkhd1l1	APN	15	44,354,425 (GRCm39)	missense	possibly damaging	0.67
IGL00537:Pkhd1l1	APN	15	44,455,388 (GRCm39)	missense	possibly damaging	0.88
IGL00537:Pkhd1l1	APN	15	44,363,443 (GRCm39)	missense	probably benign	0.42
IGL00580:Pkhd1l1	APN	15	44,449,870 (GRCm39)	missense	probably damaging	0.98
IGL01085:Pkhd1l1	APN	15	44,426,148 (GRCm39)	splice site	probably null
IGL01089:Pkhd1l1	APN	15	44,347,265 (GRCm39)	splice site	probably benign
IGL01094:Pkhd1l1	APN	15	44,410,325 (GRCm39)	missense	probably benign	0.09
IGL01120:Pkhd1l1	APN	15	44,368,708 (GRCm39)	critical splice donor site	probably null
IGL01307:Pkhd1l1	APN	15	44,393,425 (GRCm39)	missense	possibly damaging	0.82
IGL01362:Pkhd1l1	APN	15	44,396,378 (GRCm39)	missense	probably benign	0.00
IGL01403:Pkhd1l1	APN	15	44,347,229 (GRCm39)	nonsense	probably null
IGL01546:Pkhd1l1	APN	15	44,429,712 (GRCm39)	missense	probably damaging	1.00
IGL01596:Pkhd1l1	APN	15	44,392,806 (GRCm39)	missense	possibly damaging	0.50
IGL01696:Pkhd1l1	APN	15	44,392,747 (GRCm39)	missense	possibly damaging	0.79
IGL01844:Pkhd1l1	APN	15	44,362,796 (GRCm39)	splice site	probably benign
IGL02007:Pkhd1l1	APN	15	44,397,129 (GRCm39)	splice site	probably benign
IGL02041:Pkhd1l1	APN	15	44,356,452 (GRCm39)	splice site	probably null
IGL02171:Pkhd1l1	APN	15	44,379,542 (GRCm39)	missense	possibly damaging	0.80
IGL02206:Pkhd1l1	APN	15	44,376,245 (GRCm39)	missense	probably benign	0.08
IGL02266:Pkhd1l1	APN	15	44,437,010 (GRCm39)	missense	probably damaging	1.00
IGL02487:Pkhd1l1	APN	15	44,322,822 (GRCm39)	missense	possibly damaging	0.65
IGL02488:Pkhd1l1	APN	15	44,421,993 (GRCm39)	missense	probably benign
IGL02522:Pkhd1l1	APN	15	44,419,298 (GRCm39)	missense	possibly damaging	0.71
IGL02554:Pkhd1l1	APN	15	44,441,896 (GRCm39)	missense	probably damaging	1.00
IGL02566:Pkhd1l1	APN	15	44,389,450 (GRCm39)	splice site	probably null
IGL02602:Pkhd1l1	APN	15	44,421,327 (GRCm39)	missense	probably damaging	1.00
IGL02606:Pkhd1l1	APN	15	44,452,852 (GRCm39)	missense	probably benign	0.00
IGL02623:Pkhd1l1	APN	15	44,448,269 (GRCm39)	missense	probably damaging	1.00
IGL02634:Pkhd1l1	APN	15	44,403,063 (GRCm39)	missense	probably damaging	1.00
IGL02637:Pkhd1l1	APN	15	44,427,720 (GRCm39)	missense	probably damaging	1.00
IGL02651:Pkhd1l1	APN	15	44,347,210 (GRCm39)	missense	probably damaging	1.00
IGL02679:Pkhd1l1	APN	15	44,393,441 (GRCm39)	critical splice donor site	probably null
IGL02684:Pkhd1l1	APN	15	44,379,605 (GRCm39)	critical splice donor site	probably null
IGL02739:Pkhd1l1	APN	15	44,404,346 (GRCm39)	missense	probably benign	0.11
IGL02831:Pkhd1l1	APN	15	44,364,889 (GRCm39)	missense	probably benign	0.18
IGL02839:Pkhd1l1	APN	15	44,392,939 (GRCm39)	missense	probably damaging	0.98
IGL02944:Pkhd1l1	APN	15	44,364,927 (GRCm39)	missense	probably damaging	1.00
IGL02957:Pkhd1l1	APN	15	44,376,304 (GRCm39)	missense	probably damaging	1.00
IGL03001:Pkhd1l1	APN	15	44,421,400 (GRCm39)	missense	probably damaging	1.00
IGL03030:Pkhd1l1	APN	15	44,460,298 (GRCm39)	missense	probably benign	0.41
IGL03030:Pkhd1l1	APN	15	44,455,372 (GRCm39)	missense	probably benign	0.00
IGL03132:Pkhd1l1	APN	15	44,438,013 (GRCm39)	missense	probably damaging	1.00
IGL03194:Pkhd1l1	APN	15	44,381,531 (GRCm39)	missense	probably damaging	1.00
IGL03219:Pkhd1l1	APN	15	44,460,291 (GRCm39)	missense	possibly damaging	0.62
IGL03236:Pkhd1l1	APN	15	44,445,222 (GRCm39)	missense	probably damaging	1.00
IGL03266:Pkhd1l1	APN	15	44,402,348 (GRCm39)	missense	probably damaging	1.00
IGL03276:Pkhd1l1	APN	15	44,457,980 (GRCm39)	missense	possibly damaging	0.77
IGL03284:Pkhd1l1	APN	15	44,410,914 (GRCm39)	splice site	probably benign
IGL03377:Pkhd1l1	APN	15	44,347,747 (GRCm39)	splice site	probably null
R0310_Pkhd1l1_251	UTSW	15	44,386,134 (GRCm39)	splice site	probably benign
R0344_Pkhd1l1_462	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R1737_Pkhd1l1_815	UTSW	15	44,410,905 (GRCm39)	critical splice donor site	probably null
R5049_Pkhd1l1_556	UTSW	15	44,321,012 (GRCm39)	missense	probably benign	0.00
K7371:Pkhd1l1	UTSW	15	44,363,463 (GRCm39)	missense	possibly damaging	0.94
K7371:Pkhd1l1	UTSW	15	44,400,838 (GRCm39)	missense	possibly damaging	0.67
N/A - 287:Pkhd1l1	UTSW	15	44,445,654 (GRCm39)	missense	probably damaging	0.98
P4717OSA:Pkhd1l1	UTSW	15	44,391,643 (GRCm39)	missense	probably damaging	1.00
P4717OSA:Pkhd1l1	UTSW	15	44,386,895 (GRCm39)	missense	probably benign	0.17
R0007:Pkhd1l1	UTSW	15	44,437,794 (GRCm39)	splice site	probably benign
R0020:Pkhd1l1	UTSW	15	44,420,268 (GRCm39)	missense	probably damaging	1.00
R0034:Pkhd1l1	UTSW	15	44,367,405 (GRCm39)	missense	probably benign	0.00
R0040:Pkhd1l1	UTSW	15	44,437,021 (GRCm39)	missense	probably damaging	1.00
R0050:Pkhd1l1	UTSW	15	44,437,203 (GRCm39)	missense	possibly damaging	0.79
R0050:Pkhd1l1	UTSW	15	44,437,203 (GRCm39)	missense	possibly damaging	0.79
R0063:Pkhd1l1	UTSW	15	44,392,633 (GRCm39)	missense	probably damaging	1.00
R0063:Pkhd1l1	UTSW	15	44,392,633 (GRCm39)	missense	probably damaging	1.00
R0086:Pkhd1l1	UTSW	15	44,419,404 (GRCm39)	missense	possibly damaging	0.94
R0103:Pkhd1l1	UTSW	15	44,460,537 (GRCm39)	missense	probably benign
R0103:Pkhd1l1	UTSW	15	44,460,537 (GRCm39)	missense	probably benign
R0127:Pkhd1l1	UTSW	15	44,418,001 (GRCm39)	missense	probably damaging	0.99
R0226:Pkhd1l1	UTSW	15	44,390,180 (GRCm39)	missense	possibly damaging	0.65
R0268:Pkhd1l1	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R0294:Pkhd1l1	UTSW	15	44,423,831 (GRCm39)	missense	probably benign	0.05
R0310:Pkhd1l1	UTSW	15	44,386,134 (GRCm39)	splice site	probably benign
R0344:Pkhd1l1	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R0449:Pkhd1l1	UTSW	15	44,364,915 (GRCm39)	missense	probably damaging	1.00
R0492:Pkhd1l1	UTSW	15	44,383,086 (GRCm39)	missense	probably benign	0.03
R0505:Pkhd1l1	UTSW	15	44,452,814 (GRCm39)	missense	probably damaging	1.00
R0529:Pkhd1l1	UTSW	15	44,390,150 (GRCm39)	missense	possibly damaging	0.62
R0543:Pkhd1l1	UTSW	15	44,386,887 (GRCm39)	critical splice acceptor site	probably null
R0552:Pkhd1l1	UTSW	15	44,352,942 (GRCm39)	missense	probably damaging	0.98
R0558:Pkhd1l1	UTSW	15	44,347,820 (GRCm39)	missense	probably damaging	0.97
R0609:Pkhd1l1	UTSW	15	44,330,820 (GRCm39)	missense	possibly damaging	0.48
R0619:Pkhd1l1	UTSW	15	44,347,234 (GRCm39)	missense	probably damaging	1.00
R0727:Pkhd1l1	UTSW	15	44,399,184 (GRCm39)	missense	possibly damaging	0.80
R0787:Pkhd1l1	UTSW	15	44,392,660 (GRCm39)	missense	probably damaging	1.00
R0846:Pkhd1l1	UTSW	15	44,358,993 (GRCm39)	missense	probably damaging	1.00
R0909:Pkhd1l1	UTSW	15	44,402,279 (GRCm39)	splice site	probably null
R0942:Pkhd1l1	UTSW	15	44,396,355 (GRCm39)	missense	probably benign	0.01
R1056:Pkhd1l1	UTSW	15	44,455,360 (GRCm39)	missense	probably damaging	1.00
R1147:Pkhd1l1	UTSW	15	44,400,837 (GRCm39)	missense	probably null	0.15
R1147:Pkhd1l1	UTSW	15	44,400,837 (GRCm39)	missense	probably null	0.15
R1187:Pkhd1l1	UTSW	15	44,361,447 (GRCm39)	missense	possibly damaging	0.65
R1328:Pkhd1l1	UTSW	15	44,361,392 (GRCm39)	missense	probably benign	0.01
R1331:Pkhd1l1	UTSW	15	44,452,993 (GRCm39)	missense	probably damaging	1.00
R1331:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1332:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1335:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1338:Pkhd1l1	UTSW	15	44,390,120 (GRCm39)	missense	probably damaging	1.00
R1440:Pkhd1l1	UTSW	15	44,404,384 (GRCm39)	splice site	probably benign
R1445:Pkhd1l1	UTSW	15	44,369,040 (GRCm39)	missense	probably benign	0.32
R1458:Pkhd1l1	UTSW	15	44,379,511 (GRCm39)	missense	probably benign	0.01
R1469:Pkhd1l1	UTSW	15	44,400,282 (GRCm39)	missense	probably benign	0.45
R1469:Pkhd1l1	UTSW	15	44,400,282 (GRCm39)	missense	probably benign	0.45
R1500:Pkhd1l1	UTSW	15	44,408,890 (GRCm39)	missense	probably damaging	1.00
R1528:Pkhd1l1	UTSW	15	44,390,120 (GRCm39)	missense	probably damaging	1.00
R1542:Pkhd1l1	UTSW	15	44,391,587 (GRCm39)	missense	probably benign	0.44
R1568:Pkhd1l1	UTSW	15	44,408,897 (GRCm39)	splice site	probably null
R1571:Pkhd1l1	UTSW	15	44,390,237 (GRCm39)	missense	probably benign
R1572:Pkhd1l1	UTSW	15	44,406,869 (GRCm39)	missense	probably benign	0.01
R1604:Pkhd1l1	UTSW	15	44,330,763 (GRCm39)	nonsense	probably null
R1638:Pkhd1l1	UTSW	15	44,460,513 (GRCm39)	missense	probably benign	0.06
R1639:Pkhd1l1	UTSW	15	44,404,351 (GRCm39)	missense	probably damaging	0.99
R1737:Pkhd1l1	UTSW	15	44,410,905 (GRCm39)	critical splice donor site	probably null
R1816:Pkhd1l1	UTSW	15	44,391,635 (GRCm39)	missense	possibly damaging	0.91
R1826:Pkhd1l1	UTSW	15	44,366,741 (GRCm39)	missense	possibly damaging	0.75
R1880:Pkhd1l1	UTSW	15	44,388,638 (GRCm39)	missense	probably benign	0.13
R1930:Pkhd1l1	UTSW	15	44,366,733 (GRCm39)	missense	possibly damaging	0.69
R1933:Pkhd1l1	UTSW	15	44,404,280 (GRCm39)	missense	possibly damaging	0.48
R1938:Pkhd1l1	UTSW	15	44,363,434 (GRCm39)	missense	probably benign
R1975:Pkhd1l1	UTSW	15	44,393,109 (GRCm39)	missense	probably damaging	1.00
R1999:Pkhd1l1	UTSW	15	44,363,378 (GRCm39)	splice site	probably null
R2037:Pkhd1l1	UTSW	15	44,431,617 (GRCm39)	splice site	probably null
R2045:Pkhd1l1	UTSW	15	44,343,050 (GRCm39)	missense	probably damaging	1.00
R2049:Pkhd1l1	UTSW	15	44,445,137 (GRCm39)	missense	probably damaging	1.00
R2049:Pkhd1l1	UTSW	15	44,410,909 (GRCm39)	splice site	probably benign
R2063:Pkhd1l1	UTSW	15	44,414,148 (GRCm39)	missense	possibly damaging	0.69
R2072:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2073:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2075:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2078:Pkhd1l1	UTSW	15	44,391,163 (GRCm39)	missense	probably benign	0.08
R2116:Pkhd1l1	UTSW	15	44,432,878 (GRCm39)	missense	probably damaging	0.97
R2133:Pkhd1l1	UTSW	15	44,379,581 (GRCm39)	missense	possibly damaging	0.91
R2138:Pkhd1l1	UTSW	15	44,364,853 (GRCm39)	missense	probably damaging	1.00
R2139:Pkhd1l1	UTSW	15	44,393,214 (GRCm39)	missense	possibly damaging	0.46
R2145:Pkhd1l1	UTSW	15	44,376,273 (GRCm39)	splice site	probably null
R2150:Pkhd1l1	UTSW	15	44,363,378 (GRCm39)	splice site	probably null
R2177:Pkhd1l1	UTSW	15	44,322,791 (GRCm39)	missense	probably benign
R2184:Pkhd1l1	UTSW	15	44,362,692 (GRCm39)	missense	possibly damaging	0.89
R2216:Pkhd1l1	UTSW	15	44,437,291 (GRCm39)	missense	probably damaging	1.00
R2226:Pkhd1l1	UTSW	15	44,376,188 (GRCm39)	missense	possibly damaging	0.79
R2227:Pkhd1l1	UTSW	15	44,376,188 (GRCm39)	missense	possibly damaging	0.79
R2243:Pkhd1l1	UTSW	15	44,410,323 (GRCm39)	missense	probably damaging	1.00
R2290:Pkhd1l1	UTSW	15	44,391,646 (GRCm39)	missense	probably benign	0.03
R2294:Pkhd1l1	UTSW	15	44,343,003 (GRCm39)	missense	probably damaging	0.99
R2346:Pkhd1l1	UTSW	15	44,423,902 (GRCm39)	missense	possibly damaging	0.82
R2356:Pkhd1l1	UTSW	15	44,396,415 (GRCm39)	missense	probably benign	0.00
R2386:Pkhd1l1	UTSW	15	44,391,574 (GRCm39)	missense	probably benign	0.00
R2404:Pkhd1l1	UTSW	15	44,414,216 (GRCm39)	missense	probably damaging	1.00
R2504:Pkhd1l1	UTSW	15	44,348,824 (GRCm39)	missense	probably damaging	0.97
R2679:Pkhd1l1	UTSW	15	44,408,782 (GRCm39)	missense	probably damaging	0.99
R2860:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2861:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2862:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2972:Pkhd1l1	UTSW	15	44,410,644 (GRCm39)	missense	possibly damaging	0.65
R3016:Pkhd1l1	UTSW	15	44,408,766 (GRCm39)	missense	probably benign	0.02
R3162:Pkhd1l1	UTSW	15	44,368,924 (GRCm39)	missense	probably damaging	1.00
R3162:Pkhd1l1	UTSW	15	44,368,924 (GRCm39)	missense	probably damaging	1.00
R3416:Pkhd1l1	UTSW	15	44,410,760 (GRCm39)	missense	probably damaging	1.00
R3623:Pkhd1l1	UTSW	15	44,390,265 (GRCm39)	missense	probably damaging	1.00
R3687:Pkhd1l1	UTSW	15	44,409,983 (GRCm39)	missense	probably benign	0.17
R3755:Pkhd1l1	UTSW	15	44,452,802 (GRCm39)	missense	probably damaging	1.00
R3776:Pkhd1l1	UTSW	15	44,378,371 (GRCm39)	critical splice donor site	probably null
R3803:Pkhd1l1	UTSW	15	44,356,531 (GRCm39)	missense	probably benign	0.25
R3942:Pkhd1l1	UTSW	15	44,455,422 (GRCm39)	critical splice donor site	probably null
R4010:Pkhd1l1	UTSW	15	44,392,496 (GRCm39)	missense	possibly damaging	0.80
R4049:Pkhd1l1	UTSW	15	44,361,953 (GRCm39)	missense	probably damaging	1.00
R4059:Pkhd1l1	UTSW	15	44,414,156 (GRCm39)	missense	probably benign	0.01
R4179:Pkhd1l1	UTSW	15	44,387,045 (GRCm39)	missense	probably benign	0.45
R4184:Pkhd1l1	UTSW	15	44,455,302 (GRCm39)	missense	probably benign	0.00
R4369:Pkhd1l1	UTSW	15	44,368,949 (GRCm39)	missense	probably benign	0.00
R4462:Pkhd1l1	UTSW	15	44,445,200 (GRCm39)	missense	probably damaging	1.00
R4551:Pkhd1l1	UTSW	15	44,414,281 (GRCm39)	missense	probably damaging	1.00
R4618:Pkhd1l1	UTSW	15	44,403,078 (GRCm39)	missense	probably damaging	1.00
R4632:Pkhd1l1	UTSW	15	44,347,796 (GRCm39)	missense	probably benign	0.07
R4657:Pkhd1l1	UTSW	15	44,410,743 (GRCm39)	missense	probably damaging	1.00
R4716:Pkhd1l1	UTSW	15	44,419,428 (GRCm39)	missense	probably damaging	1.00
R4788:Pkhd1l1	UTSW	15	44,361,417 (GRCm39)	missense	probably damaging	0.99
R4828:Pkhd1l1	UTSW	15	44,392,801 (GRCm39)	missense	possibly damaging	0.55
R4858:Pkhd1l1	UTSW	15	44,354,497 (GRCm39)	missense	probably damaging	0.99
R4860:Pkhd1l1	UTSW	15	44,400,774 (GRCm39)	missense	possibly damaging	0.77
R4860:Pkhd1l1	UTSW	15	44,400,774 (GRCm39)	missense	possibly damaging	0.77
R4951:Pkhd1l1	UTSW	15	44,397,287 (GRCm39)	missense	possibly damaging	0.82
R4963:Pkhd1l1	UTSW	15	44,367,421 (GRCm39)	missense	probably benign	0.00
R5023:Pkhd1l1	UTSW	15	44,391,587 (GRCm39)	missense	probably benign	0.44
R5023:Pkhd1l1	UTSW	15	44,445,623 (GRCm39)	missense	probably benign	0.00
R5035:Pkhd1l1	UTSW	15	44,431,720 (GRCm39)	missense	probably damaging	1.00
R5049:Pkhd1l1	UTSW	15	44,321,012 (GRCm39)	missense	probably benign	0.00
R5065:Pkhd1l1	UTSW	15	44,445,689 (GRCm39)	missense	possibly damaging	0.68
R5089:Pkhd1l1	UTSW	15	44,455,283 (GRCm39)	missense	probably benign	0.01
R5151:Pkhd1l1	UTSW	15	44,368,705 (GRCm39)	missense	probably benign	0.00
R5153:Pkhd1l1	UTSW	15	44,368,705 (GRCm39)	missense	probably benign	0.00
R5189:Pkhd1l1	UTSW	15	44,410,544 (GRCm39)	missense	probably damaging	1.00
R5204:Pkhd1l1	UTSW	15	44,410,437 (GRCm39)	missense	possibly damaging	0.51
R5216:Pkhd1l1	UTSW	15	44,359,043 (GRCm39)	nonsense	probably null
R5286:Pkhd1l1	UTSW	15	44,378,368 (GRCm39)	nonsense	probably null
R5292:Pkhd1l1	UTSW	15	44,392,962 (GRCm39)	missense	probably damaging	1.00
R5293:Pkhd1l1	UTSW	15	44,399,146 (GRCm39)	missense	probably benign	0.01
R5298:Pkhd1l1	UTSW	15	44,367,442 (GRCm39)	missense	probably benign	0.00
R5327:Pkhd1l1	UTSW	15	44,410,258 (GRCm39)	missense	probably damaging	1.00
R5346:Pkhd1l1	UTSW	15	44,404,363 (GRCm39)	missense	probably damaging	1.00
R5481:Pkhd1l1	UTSW	15	44,422,042 (GRCm39)	missense	probably damaging	1.00
R5645:Pkhd1l1	UTSW	15	44,396,388 (GRCm39)	missense	probably benign	0.18
R5718:Pkhd1l1	UTSW	15	44,408,813 (GRCm39)	missense	probably damaging	1.00
R5809:Pkhd1l1	UTSW	15	44,383,103 (GRCm39)	missense	probably benign	0.03
R5816:Pkhd1l1	UTSW	15	44,429,718 (GRCm39)	missense	probably benign	0.01
R5854:Pkhd1l1	UTSW	15	44,445,186 (GRCm39)	missense	probably damaging	1.00
R5876:Pkhd1l1	UTSW	15	44,441,984 (GRCm39)	missense	possibly damaging	0.51
R5909:Pkhd1l1	UTSW	15	44,390,159 (GRCm39)	missense	probably damaging	1.00
R5950:Pkhd1l1	UTSW	15	44,396,361 (GRCm39)	missense	probably benign	0.00
R5961:Pkhd1l1	UTSW	15	44,322,859 (GRCm39)	missense	probably damaging	1.00
R5972:Pkhd1l1	UTSW	15	44,408,812 (GRCm39)	missense	probably damaging	1.00
R5975:Pkhd1l1	UTSW	15	44,389,384 (GRCm39)	missense	probably damaging	1.00
R5982:Pkhd1l1	UTSW	15	44,352,900 (GRCm39)	splice site	probably null
R6066:Pkhd1l1	UTSW	15	44,391,525 (GRCm39)	missense	probably damaging	0.99
R6122:Pkhd1l1	UTSW	15	44,421,336 (GRCm39)	missense	probably damaging	1.00
R6248:Pkhd1l1	UTSW	15	44,392,955 (GRCm39)	missense	probably benign
R6294:Pkhd1l1	UTSW	15	44,433,424 (GRCm39)	missense	probably damaging	1.00
R6301:Pkhd1l1	UTSW	15	44,452,921 (GRCm39)	missense	probably damaging	0.99
R6526:Pkhd1l1	UTSW	15	44,361,485 (GRCm39)	critical splice donor site	probably null
R6707:Pkhd1l1	UTSW	15	44,392,539 (GRCm39)	missense	probably benign
R6736:Pkhd1l1	UTSW	15	44,421,336 (GRCm39)	missense	probably damaging	1.00
R6753:Pkhd1l1	UTSW	15	44,453,059 (GRCm39)	missense	probably benign	0.45
R6815:Pkhd1l1	UTSW	15	44,426,051 (GRCm39)	missense	probably damaging	1.00
R6874:Pkhd1l1	UTSW	15	44,452,923 (GRCm39)	missense	probably benign	0.06
R6942:Pkhd1l1	UTSW	15	44,386,025 (GRCm39)	missense	probably damaging	1.00
R6970:Pkhd1l1	UTSW	15	44,375,070 (GRCm39)	missense	possibly damaging	0.61
R6982:Pkhd1l1	UTSW	15	44,429,664 (GRCm39)	missense	probably damaging	0.97
R7103:Pkhd1l1	UTSW	15	44,437,027 (GRCm39)	missense	probably benign	0.02
R7116:Pkhd1l1	UTSW	15	44,421,372 (GRCm39)	missense	probably benign	0.00
R7135:Pkhd1l1	UTSW	15	44,448,374 (GRCm39)	critical splice donor site	probably null
R7143:Pkhd1l1	UTSW	15	44,437,033 (GRCm39)	missense	possibly damaging	0.93
R7177:Pkhd1l1	UTSW	15	44,330,800 (GRCm39)	missense	probably damaging	1.00
R7194:Pkhd1l1	UTSW	15	44,392,512 (GRCm39)	missense	probably damaging	1.00
R7204:Pkhd1l1	UTSW	15	44,386,949 (GRCm39)	missense	possibly damaging	0.90
R7215:Pkhd1l1	UTSW	15	44,391,559 (GRCm39)	missense	possibly damaging	0.78
R7218:Pkhd1l1	UTSW	15	44,386,091 (GRCm39)	missense	possibly damaging	0.49
R7225:Pkhd1l1	UTSW	15	44,410,337 (GRCm39)	missense	probably damaging	1.00
R7283:Pkhd1l1	UTSW	15	44,366,676 (GRCm39)	missense	probably benign	0.10
R7292:Pkhd1l1	UTSW	15	44,361,986 (GRCm39)	missense	probably benign
R7304:Pkhd1l1	UTSW	15	44,361,878 (GRCm39)	missense	possibly damaging	0.94
R7349:Pkhd1l1	UTSW	15	44,378,350 (GRCm39)	missense	probably damaging	1.00
R7359:Pkhd1l1	UTSW	15	44,452,882 (GRCm39)	missense	probably damaging	1.00
R7407:Pkhd1l1	UTSW	15	44,458,407 (GRCm39)	missense	possibly damaging	0.75
R7475:Pkhd1l1	UTSW	15	44,368,581 (GRCm39)	nonsense	probably null
R7481:Pkhd1l1	UTSW	15	44,376,307 (GRCm39)	missense	probably benign
R7554:Pkhd1l1	UTSW	15	44,358,866 (GRCm39)	missense	probably damaging	1.00
R7555:Pkhd1l1	UTSW	15	44,414,157 (GRCm39)	missense	possibly damaging	0.51
R7562:Pkhd1l1	UTSW	15	44,378,326 (GRCm39)	missense	possibly damaging	0.68
R7583:Pkhd1l1	UTSW	15	44,431,760 (GRCm39)	critical splice donor site	probably null
R7595:Pkhd1l1	UTSW	15	44,358,917 (GRCm39)	missense	probably damaging	1.00
R7749:Pkhd1l1	UTSW	15	44,391,133 (GRCm39)	missense	probably benign	0.00
R7754:Pkhd1l1	UTSW	15	44,449,804 (GRCm39)	missense	possibly damaging	0.94
R7761:Pkhd1l1	UTSW	15	44,393,280 (GRCm39)	missense	probably benign	0.00
R7774:Pkhd1l1	UTSW	15	44,404,303 (GRCm39)	missense	probably benign	0.03
R7785:Pkhd1l1	UTSW	15	44,406,965 (GRCm39)	missense	probably damaging	1.00
R7790:Pkhd1l1	UTSW	15	44,441,977 (GRCm39)	missense	probably damaging	1.00
R7804:Pkhd1l1	UTSW	15	44,460,534 (GRCm39)	nonsense	probably null
R7864:Pkhd1l1	UTSW	15	44,389,449 (GRCm39)	critical splice donor site	probably null
R7883:Pkhd1l1	UTSW	15	44,392,522 (GRCm39)	missense	probably damaging	1.00
R8031:Pkhd1l1	UTSW	15	44,376,230 (GRCm39)	missense	probably damaging	1.00
R8128:Pkhd1l1	UTSW	15	44,361,449 (GRCm39)	missense	possibly damaging	0.94
R8142:Pkhd1l1	UTSW	15	44,378,327 (GRCm39)	missense	probably benign	0.00
R8150:Pkhd1l1	UTSW	15	44,410,055 (GRCm39)	missense	possibly damaging	0.68
R8209:Pkhd1l1	UTSW	15	44,437,803 (GRCm39)	missense	possibly damaging	0.46
R8212:Pkhd1l1	UTSW	15	44,362,696 (GRCm39)	missense	probably benign	0.12
R8226:Pkhd1l1	UTSW	15	44,437,803 (GRCm39)	missense	possibly damaging	0.46
R8248:Pkhd1l1	UTSW	15	44,406,942 (GRCm39)	missense	probably damaging	0.99
R8299:Pkhd1l1	UTSW	15	44,445,330 (GRCm39)	missense	probably benign	0.26
R8425:Pkhd1l1	UTSW	15	44,437,911 (GRCm39)	missense	probably benign	0.01
R8485:Pkhd1l1	UTSW	15	44,423,796 (GRCm39)	missense	probably damaging	0.98
R8486:Pkhd1l1	UTSW	15	44,410,812 (GRCm39)	missense	probably damaging	1.00
R8701:Pkhd1l1	UTSW	15	44,438,079 (GRCm39)	missense	probably damaging	1.00
R8709:Pkhd1l1	UTSW	15	44,381,570 (GRCm39)	missense	probably benign	0.01
R8777:Pkhd1l1	UTSW	15	44,361,967 (GRCm39)	missense	probably damaging	1.00
R8777-TAIL:Pkhd1l1	UTSW	15	44,361,967 (GRCm39)	missense	probably damaging	1.00
R8845:Pkhd1l1	UTSW	15	44,368,650 (GRCm39)	missense	probably benign	0.30
R8846:Pkhd1l1	UTSW	15	44,410,358 (GRCm39)	nonsense	probably null
R8863:Pkhd1l1	UTSW	15	44,433,382 (GRCm39)	nonsense	probably null
R8917:Pkhd1l1	UTSW	15	44,396,403 (GRCm39)	missense	probably benign	0.04
R8936:Pkhd1l1	UTSW	15	44,402,312 (GRCm39)	missense	possibly damaging	0.94
R8962:Pkhd1l1	UTSW	15	44,400,291 (GRCm39)	missense	probably damaging	1.00
R8971:Pkhd1l1	UTSW	15	44,392,915 (GRCm39)	missense	possibly damaging	0.68
R8973:Pkhd1l1	UTSW	15	44,449,833 (GRCm39)	missense	probably damaging	1.00
R8982:Pkhd1l1	UTSW	15	44,387,069 (GRCm39)	nonsense	probably null
R8994:Pkhd1l1	UTSW	15	44,410,499 (GRCm39)	missense	probably damaging	0.99
R9004:Pkhd1l1	UTSW	15	44,406,768 (GRCm39)	missense	probably benign	0.16
R9064:Pkhd1l1	UTSW	15	44,426,038 (GRCm39)	missense	possibly damaging	0.93
R9173:Pkhd1l1	UTSW	15	44,384,152 (GRCm39)	missense	probably benign	0.09
R9185:Pkhd1l1	UTSW	15	44,453,019 (GRCm39)	missense	probably benign	0.01
R9213:Pkhd1l1	UTSW	15	44,358,874 (GRCm39)	missense	probably damaging	1.00
R9218:Pkhd1l1	UTSW	15	44,384,122 (GRCm39)	missense	possibly damaging	0.90
R9256:Pkhd1l1	UTSW	15	44,397,290 (GRCm39)	critical splice donor site	probably null
R9291:Pkhd1l1	UTSW	15	44,433,372 (GRCm39)	missense	probably damaging	1.00
R9309:Pkhd1l1	UTSW	15	44,400,289 (GRCm39)	missense	probably benign	0.00
R9319:Pkhd1l1	UTSW	15	44,392,974 (GRCm39)	missense	possibly damaging	0.46
R9339:Pkhd1l1	UTSW	15	44,452,949 (GRCm39)	missense	probably damaging	1.00
R9366:Pkhd1l1	UTSW	15	44,410,308 (GRCm39)	missense	probably benign	0.03
R9444:Pkhd1l1	UTSW	15	44,418,053 (GRCm39)	missense	probably benign	0.00
R9464:Pkhd1l1	UTSW	15	44,343,009 (GRCm39)	missense	probably damaging	1.00
R9525:Pkhd1l1	UTSW	15	44,448,322 (GRCm39)	missense	possibly damaging	0.88
R9542:Pkhd1l1	UTSW	15	44,410,284 (GRCm39)	missense	probably benign	0.12
R9544:Pkhd1l1	UTSW	15	44,410,239 (GRCm39)	missense	probably damaging	1.00
R9608:Pkhd1l1	UTSW	15	44,442,029 (GRCm39)	missense	possibly damaging	0.65
R9673:Pkhd1l1	UTSW	15	44,386,901 (GRCm39)	missense	probably benign	0.22
R9771:Pkhd1l1	UTSW	15	44,358,883 (GRCm39)	missense	probably benign
R9792:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
R9793:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
R9795:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
RF006:Pkhd1l1	UTSW	15	44,421,903 (GRCm39)	critical splice acceptor site	probably benign
RF006:Pkhd1l1	UTSW	15	44,366,634 (GRCm39)	missense	probably benign	0.03
RF008:Pkhd1l1	UTSW	15	44,421,901 (GRCm39)	critical splice acceptor site	probably benign
RF012:Pkhd1l1	UTSW	15	44,421,901 (GRCm39)	critical splice acceptor site	probably benign
RF030:Pkhd1l1	UTSW	15	44,421,898 (GRCm39)	critical splice acceptor site	probably benign
RF033:Pkhd1l1	UTSW	15	44,421,902 (GRCm39)	critical splice acceptor site	probably benign
RF038:Pkhd1l1	UTSW	15	44,421,899 (GRCm39)	critical splice acceptor site	probably benign
RF046:Pkhd1l1	UTSW	15	44,421,891 (GRCm39)	critical splice acceptor site	probably benign
X0027:Pkhd1l1	UTSW	15	44,455,362 (GRCm39)	missense	probably damaging	0.99
Z1177:Pkhd1l1	UTSW	15	44,441,974 (GRCm39)	missense	probably damaging	0.99
Z1177:Pkhd1l1	UTSW	15	44,436,972 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- GTGTCTGGTTATGAAACAATCTTCC -3'
(R):5'- CATGTCTACACACTGACTGAATGC -3'

Sequencing Primer
(F):5'- CACAGGAGTACAAGGTCAATTTC -3'
(R):5'- ACACACTGACTGAATGCTTTTC -3'

Posted On

2019-12-04