Incidental Mutation 'R7949:Cdc14b'
| ID |
656364 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Cdc14b
|
| Ensembl Gene |
ENSMUSG00000033102 |
| Gene Name |
CDC14 cell division cycle 14B |
| Synonyms |
A530086E13Rik, 2810432N10Rik |
| MMRRC Submission |
045994-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.240)
|
| Stock # |
R7949 (G1)
|
| Quality Score |
155.008 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
64337082-64423104 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to C
at 64338212 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000152388
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000021929]
[ENSMUST00000039318]
[ENSMUST00000109769]
[ENSMUST00000109770]
[ENSMUST00000221139]
[ENSMUST00000221634]
[ENSMUST00000221904]
|
| AlphaFold |
Q6PFY9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000021929
|
| SMART Domains |
Protein: ENSMUSP00000021929
Gene: ENSMUSG00000021476
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
3 |
15 |
N/A |
INTRINSIC |
|
Pfam:IHABP4_N
|
16 |
163 |
2.3e-52 |
PFAM |
|
low complexity region
|
174 |
201 |
N/A |
INTRINSIC |
|
HABP4_PAI-RBP1
|
212 |
316 |
5.03e-34 |
SMART |
|
low complexity region
|
365 |
383 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000039318
|
| SMART Domains |
Protein: ENSMUSP00000046003
Gene: ENSMUSG00000033102
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
34 |
N/A |
INTRINSIC |
|
Pfam:DSPn
|
51 |
189 |
6.1e-57 |
PFAM |
|
Pfam:DSPc
|
240 |
365 |
9.2e-17 |
PFAM |
|
Pfam:Y_phosphatase
|
244 |
365 |
1e-7 |
PFAM |
|
transmembrane domain
|
445 |
467 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000109769
|
| SMART Domains |
Protein: ENSMUSP00000105391
Gene: ENSMUSG00000033102
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DSPn
|
12 |
152 |
2.5e-58 |
PFAM |
|
Pfam:DSPc
|
203 |
328 |
8e-17 |
PFAM |
|
Pfam:Y_phosphatase
|
206 |
328 |
8.9e-8 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000109770
|
| SMART Domains |
Protein: ENSMUSP00000105392
Gene: ENSMUSG00000033102
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
34 |
N/A |
INTRINSIC |
|
Pfam:DSPn
|
51 |
189 |
3.4e-57 |
PFAM |
|
Pfam:DSPc
|
240 |
365 |
2.8e-16 |
PFAM |
|
Pfam:Y_phosphatase
|
252 |
364 |
2.4e-7 |
PFAM |
|
transmembrane domain
|
445 |
467 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000221139
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000221634
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000221904
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.7%
- 20x: 98.9%
|
| Validation Efficiency |
100% (47/47) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the dual specificity protein tyrosine phosphatase family. This protein is highly similar to Saccharomyces cerevisiae Cdc14, a protein tyrosine phosphatase involved in the exit of cell mitosis and initiation of DNA replication, which suggests the role in cell cycle control. This protein has been shown to interact with and dephosphorylates tumor suppressor protein p53, and is thought to regulate the function of p53. Alternative splice of this gene results in 3 transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit premature aging, including premature cataracts and kyphosis; reduced fertility, particularly in female mice; and impaired contextual conditioning. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 49 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgrv1 |
G |
A |
13: 81,303,353 (GRCm39) |
T6111M |
probably damaging |
Het |
| Adprhl1 |
T |
G |
8: 13,274,225 (GRCm39) |
R844S |
possibly damaging |
Het |
| Aldh1b1 |
A |
G |
4: 45,802,807 (GRCm39) |
E115G |
possibly damaging |
Het |
| Anp32a |
A |
G |
9: 62,280,948 (GRCm39) |
E170G |
unknown |
Het |
| Arhgap27 |
A |
G |
11: 103,228,595 (GRCm39) |
S349P |
probably damaging |
Het |
| Asns |
T |
A |
6: 7,685,328 (GRCm39) |
I110F |
probably damaging |
Het |
| Atad3a |
T |
C |
4: 155,833,152 (GRCm39) |
H437R |
possibly damaging |
Het |
| Atl2 |
C |
A |
17: 80,167,289 (GRCm39) |
R244L |
probably damaging |
Het |
| Bcl2l14 |
A |
T |
6: 134,407,083 (GRCm39) |
D222V |
probably damaging |
Het |
| Ccdc102a |
G |
T |
8: 95,631,913 (GRCm39) |
Q498K |
probably damaging |
Het |
| Cdcp3 |
G |
A |
7: 130,895,324 (GRCm39) |
|
probably null |
Het |
| Cep162 |
T |
A |
9: 87,088,901 (GRCm39) |
M994L |
probably benign |
Het |
| Ddx18 |
A |
G |
1: 121,483,047 (GRCm39) |
Y580H |
probably damaging |
Het |
| Entpd6 |
C |
A |
2: 150,612,197 (GRCm39) |
|
probably null |
Het |
| Fer |
T |
A |
17: 64,440,503 (GRCm39) |
S707T |
probably damaging |
Het |
| Gabra6 |
A |
G |
11: 42,207,826 (GRCm39) |
V215A |
probably benign |
Het |
| Gm20671 |
A |
G |
5: 32,977,288 (GRCm39) |
V142A |
probably benign |
Het |
| Gtf3c1 |
G |
T |
7: 125,250,253 (GRCm39) |
N1439K |
probably benign |
Het |
| Igbp1b |
T |
C |
6: 138,635,414 (GRCm39) |
K10R |
probably benign |
Het |
| Ighv5-8 |
TATATATATATATATATATATATA |
TATATATATATATATATATATATATA |
12: 113,618,563 (GRCm39) |
|
probably null |
Het |
| Igkv12-44 |
A |
T |
6: 69,791,874 (GRCm39) |
S30T |
probably benign |
Het |
| Immt |
A |
T |
6: 71,851,327 (GRCm39) |
R563* |
probably null |
Het |
| Jakmip1 |
A |
T |
5: 37,339,492 (GRCm39) |
Q1231L |
probably damaging |
Het |
| Jsrp1 |
T |
C |
10: 80,647,906 (GRCm39) |
T51A |
probably benign |
Het |
| Krtap31-1 |
A |
G |
11: 99,799,144 (GRCm39) |
T116A |
possibly damaging |
Het |
| Lrp8 |
T |
A |
4: 107,660,524 (GRCm39) |
D61E |
probably damaging |
Het |
| Mark2 |
T |
C |
19: 7,262,081 (GRCm39) |
D311G |
probably benign |
Het |
| Men1 |
C |
T |
19: 6,388,323 (GRCm39) |
S314L |
possibly damaging |
Het |
| Nxpe2 |
T |
C |
9: 48,234,397 (GRCm39) |
N290S |
possibly damaging |
Het |
| Or2f2 |
T |
C |
6: 42,767,588 (GRCm39) |
V205A |
possibly damaging |
Het |
| Or5b105 |
T |
A |
19: 13,080,610 (GRCm39) |
|
probably null |
Het |
| Pcolce2 |
A |
T |
9: 95,576,688 (GRCm39) |
T320S |
probably benign |
Het |
| Phc2 |
C |
T |
4: 128,603,401 (GRCm39) |
T177M |
probably damaging |
Het |
| Phf21b |
G |
T |
15: 84,676,036 (GRCm39) |
P337H |
probably damaging |
Het |
| Pinlyp |
G |
T |
7: 24,245,375 (GRCm39) |
T15K |
probably damaging |
Het |
| Ppox |
A |
T |
1: 171,105,521 (GRCm39) |
S307R |
probably benign |
Het |
| Ptk7 |
T |
A |
17: 46,897,387 (GRCm39) |
E315V |
possibly damaging |
Het |
| Pxk |
T |
C |
14: 8,144,233 (GRCm38) |
I327T |
probably damaging |
Het |
| Rabgap1 |
A |
T |
2: 37,453,491 (GRCm39) |
K973I |
probably benign |
Het |
| Rbbp8 |
A |
T |
18: 11,851,892 (GRCm39) |
I238L |
probably benign |
Het |
| Runx2 |
T |
A |
17: 45,046,442 (GRCm39) |
D109V |
possibly damaging |
Het |
| Serpinb6a |
G |
A |
13: 34,107,003 (GRCm39) |
S183L |
probably benign |
Het |
| Slco1a8 |
C |
A |
6: 141,939,991 (GRCm39) |
G171C |
probably damaging |
Het |
| Sptlc3 |
T |
C |
2: 139,467,795 (GRCm39) |
I451T |
possibly damaging |
Het |
| Sugp1 |
A |
T |
8: 70,509,153 (GRCm39) |
Y142F |
possibly damaging |
Het |
| Sumf2 |
T |
C |
5: 129,881,759 (GRCm39) |
F98S |
probably damaging |
Het |
| Tmem120a |
C |
T |
5: 135,771,220 (GRCm39) |
E39K |
possibly damaging |
Het |
| Tnxb |
C |
T |
17: 34,936,103 (GRCm39) |
P2680L |
probably damaging |
Het |
| Zfp78 |
C |
G |
7: 6,382,365 (GRCm39) |
R472G |
possibly damaging |
Het |
|
| Other mutations in Cdc14b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00778:Cdc14b
|
APN |
13 |
64,363,470 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00816:Cdc14b
|
APN |
13 |
64,353,217 (GRCm39) |
missense |
probably benign |
0.10 |
|
IGL02569:Cdc14b
|
APN |
13 |
64,373,428 (GRCm39) |
missense |
probably benign |
0.36 |
|
IGL02634:Cdc14b
|
APN |
13 |
64,364,117 (GRCm39) |
splice site |
probably benign |
|
|
IGL02897:Cdc14b
|
APN |
13 |
64,395,067 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0390:Cdc14b
|
UTSW |
13 |
64,358,006 (GRCm39) |
unclassified |
probably benign |
|
|
R0542:Cdc14b
|
UTSW |
13 |
64,391,497 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1022:Cdc14b
|
UTSW |
13 |
64,363,490 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1024:Cdc14b
|
UTSW |
13 |
64,363,490 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1676:Cdc14b
|
UTSW |
13 |
64,373,416 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1945:Cdc14b
|
UTSW |
13 |
64,367,704 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1964:Cdc14b
|
UTSW |
13 |
64,363,351 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3162:Cdc14b
|
UTSW |
13 |
64,394,422 (GRCm39) |
splice site |
probably benign |
|
|
R4359:Cdc14b
|
UTSW |
13 |
64,396,225 (GRCm39) |
missense |
probably benign |
0.27 |
|
R4598:Cdc14b
|
UTSW |
13 |
64,395,088 (GRCm39) |
missense |
probably benign |
|
|
R4716:Cdc14b
|
UTSW |
13 |
64,357,014 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6196:Cdc14b
|
UTSW |
13 |
64,353,338 (GRCm39) |
intron |
probably benign |
|
|
R6219:Cdc14b
|
UTSW |
13 |
64,353,338 (GRCm39) |
intron |
probably benign |
|
|
R6361:Cdc14b
|
UTSW |
13 |
64,364,023 (GRCm39) |
splice site |
probably null |
|
|
R6480:Cdc14b
|
UTSW |
13 |
64,373,464 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R6565:Cdc14b
|
UTSW |
13 |
64,373,444 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6692:Cdc14b
|
UTSW |
13 |
64,363,377 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7204:Cdc14b
|
UTSW |
13 |
64,358,012 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R7327:Cdc14b
|
UTSW |
13 |
64,373,461 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7464:Cdc14b
|
UTSW |
13 |
64,344,489 (GRCm39) |
nonsense |
probably null |
|
|
R7639:Cdc14b
|
UTSW |
13 |
64,353,143 (GRCm39) |
missense |
possibly damaging |
0.96 |
|
R7687:Cdc14b
|
UTSW |
13 |
64,357,007 (GRCm39) |
missense |
probably benign |
0.15 |
|
R8170:Cdc14b
|
UTSW |
13 |
64,363,549 (GRCm39) |
splice site |
probably null |
|
|
R9047:Cdc14b
|
UTSW |
13 |
64,368,758 (GRCm39) |
intron |
probably benign |
|
|
Z1176:Cdc14b
|
UTSW |
13 |
64,422,483 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
| Predicted Primers |
PCR Primer
(F):5'- CAAAACCATGCTGCTCTGTGAG -3'
(R):5'- AATACTGAGGTCATGGGGTCTC -3'
Sequencing Primer
(F):5'- CTGCTCTGTGAGGCCCC -3'
(R):5'- TTGGCACAGTATGACCTC -3'
|
| Posted On |
2020-10-28 |
Incidental Mutation