Incidental Mutation 'R1268:Foxp4'
| ID |
151229 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Foxp4
|
| Ensembl Gene |
ENSMUSG00000023991 |
| Gene Name |
forkhead box P4 |
| Synonyms |
2310007G05Rik, 1200010K03Rik |
| MMRRC Submission |
039335-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.860)
|
| Stock # |
R1268 (G1)
|
| Quality Score |
205 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
48178058-48235401 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
G to C
at 48191278 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000108890
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000097311]
[ENSMUST00000113262]
[ENSMUST00000113263]
[ENSMUST00000113265]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000097311
|
| SMART Domains |
Protein: ENSMUSP00000094916
Gene: ENSMUSG00000023991
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
27 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
67 |
87 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
173 |
N/A |
INTRINSIC |
|
low complexity region
|
182 |
208 |
N/A |
INTRINSIC |
|
low complexity region
|
259 |
270 |
N/A |
INTRINSIC |
|
low complexity region
|
297 |
308 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
313 |
338 |
3.47e0 |
SMART |
|
FH
|
470 |
552 |
4.69e-38 |
SMART |
|
low complexity region
|
644 |
658 |
N/A |
INTRINSIC |
|
low complexity region
|
671 |
683 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000113262
|
| SMART Domains |
Protein: ENSMUSP00000108887
Gene: ENSMUSG00000023991
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
27 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
67 |
87 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
173 |
N/A |
INTRINSIC |
|
low complexity region
|
182 |
208 |
N/A |
INTRINSIC |
|
low complexity region
|
259 |
270 |
N/A |
INTRINSIC |
|
low complexity region
|
297 |
308 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
313 |
338 |
3.47e0 |
SMART |
|
FH
|
458 |
540 |
4.69e-38 |
SMART |
|
low complexity region
|
632 |
646 |
N/A |
INTRINSIC |
|
low complexity region
|
659 |
671 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000113263
|
| SMART Domains |
Protein: ENSMUSP00000108888
Gene: ENSMUSG00000023991
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
27 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
67 |
87 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
171 |
N/A |
INTRINSIC |
|
low complexity region
|
180 |
206 |
N/A |
INTRINSIC |
|
low complexity region
|
257 |
268 |
N/A |
INTRINSIC |
|
low complexity region
|
295 |
306 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
311 |
336 |
3.47e0 |
SMART |
|
FH
|
468 |
550 |
4.69e-38 |
SMART |
|
low complexity region
|
642 |
656 |
N/A |
INTRINSIC |
|
low complexity region
|
669 |
681 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000113265
|
| SMART Domains |
Protein: ENSMUSP00000108890
Gene: ENSMUSG00000023991
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
27 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
67 |
87 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
173 |
N/A |
INTRINSIC |
|
low complexity region
|
182 |
208 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
214 |
282 |
3.94e-5 |
PROSPERO |
|
low complexity region
|
296 |
307 |
N/A |
INTRINSIC |
|
ZnF_C2H2
|
312 |
337 |
3.47e0 |
SMART |
|
FH
|
457 |
539 |
4.69e-38 |
SMART |
|
internal_repeat_1
|
571 |
627 |
3.94e-5 |
PROSPERO |
|
low complexity region
|
631 |
645 |
N/A |
INTRINSIC |
|
low complexity region
|
658 |
670 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136314
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137039
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154108
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.7%
- 20x: 93.6%
|
| Validation Efficiency |
100% (41/41) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to subfamily P of the forkhead box (FOX) transcription factor family. Forkhead box transcription factors play important roles in the regulation of tissue- and cell type-specific gene transcription during both development and adulthood. Many members of the forkhead box gene family, including members of subfamily P, have roles in mammalian oncogenesis. This gene may play a role in the development of tumors of the kidney and larynx. Alternative splicing of this gene produces multiple transcript variants, some encoding different isoforms. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene usually die before E12.5. Foregut closure is delayed leading to the development of two beating hearts and to the failure of the trachea and esophagus to separate. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Afdn |
T |
C |
17: 14,108,248 (GRCm39) |
V1257A |
probably damaging |
Het |
| Aplnr |
A |
G |
2: 84,967,775 (GRCm39) |
T267A |
possibly damaging |
Het |
| Arap2 |
A |
G |
5: 62,887,964 (GRCm39) |
S461P |
probably benign |
Het |
| Brpf3 |
A |
G |
17: 29,055,530 (GRCm39) |
T1160A |
probably damaging |
Het |
| Col5a1 |
A |
T |
2: 27,892,501 (GRCm39) |
T1005S |
unknown |
Het |
| Crebrf |
CTTTT |
CTTT |
17: 26,958,570 (GRCm39) |
|
probably null |
Het |
| Fmo6 |
A |
T |
1: 162,748,086 (GRCm39) |
I326N |
probably damaging |
Het |
| Gnat1 |
A |
G |
9: 107,553,076 (GRCm39) |
|
probably benign |
Het |
| Hs6st1 |
T |
A |
1: 36,108,007 (GRCm39) |
V90D |
probably damaging |
Het |
| Igsf11 |
A |
G |
16: 38,845,216 (GRCm39) |
T257A |
probably benign |
Het |
| Ints2 |
C |
T |
11: 86,123,911 (GRCm39) |
G626R |
probably damaging |
Het |
| Mab21l3 |
C |
T |
3: 101,742,363 (GRCm39) |
E66K |
possibly damaging |
Het |
| Mroh2a |
C |
T |
1: 88,158,402 (GRCm39) |
R150* |
probably null |
Het |
| Mybl2 |
A |
G |
2: 162,916,636 (GRCm39) |
N429S |
probably benign |
Het |
| Mycbp2 |
G |
A |
14: 103,446,218 (GRCm39) |
T1837I |
probably damaging |
Het |
| Myh7b |
C |
A |
2: 155,455,966 (GRCm39) |
S117* |
probably null |
Het |
| Nek1 |
C |
A |
8: 61,475,298 (GRCm39) |
A202E |
probably damaging |
Het |
| Notum |
C |
T |
11: 120,549,493 (GRCm39) |
W159* |
probably null |
Het |
| Ntn1 |
TCCTCGGC |
TC |
11: 68,103,959 (GRCm39) |
|
probably benign |
Het |
| Nup58 |
A |
T |
14: 60,482,119 (GRCm39) |
|
probably benign |
Het |
| Or2w2 |
C |
T |
13: 21,758,498 (GRCm39) |
V43M |
probably benign |
Het |
| Or4c58 |
A |
G |
2: 89,674,498 (GRCm39) |
I273T |
probably damaging |
Het |
| Or4f57 |
G |
T |
2: 111,791,222 (GRCm39) |
N65K |
possibly damaging |
Het |
| Or5b99 |
T |
C |
19: 12,976,625 (GRCm39) |
Y92H |
possibly damaging |
Het |
| Or5p69 |
A |
T |
7: 107,967,002 (GRCm39) |
I102F |
probably benign |
Het |
| Or7g12 |
T |
C |
9: 18,899,652 (GRCm39) |
F123L |
probably damaging |
Het |
| Plk4 |
T |
A |
3: 40,765,804 (GRCm39) |
V659D |
probably damaging |
Het |
| Rbm27 |
T |
C |
18: 42,466,367 (GRCm39) |
S866P |
probably damaging |
Het |
| Rnaseh2b |
A |
T |
14: 62,609,904 (GRCm39) |
K303N |
possibly damaging |
Het |
| Samd9l |
C |
T |
6: 3,376,113 (GRCm39) |
V383I |
possibly damaging |
Het |
| Shf |
G |
A |
2: 122,199,163 (GRCm39) |
P51S |
probably damaging |
Het |
| Slc35f2 |
T |
A |
9: 53,705,197 (GRCm39) |
Y62* |
probably null |
Het |
| Tenm2 |
C |
T |
11: 35,954,004 (GRCm39) |
G1236R |
possibly damaging |
Het |
| Ulk1 |
A |
G |
5: 110,938,143 (GRCm39) |
S610P |
probably damaging |
Het |
| Ulk4 |
C |
A |
9: 121,086,140 (GRCm39) |
|
probably benign |
Het |
| Vdr |
T |
C |
15: 97,755,356 (GRCm39) |
N389S |
probably benign |
Het |
|
| Other mutations in Foxp4 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01353:Foxp4
|
APN |
17 |
48,199,078 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02454:Foxp4
|
APN |
17 |
48,186,507 (GRCm39) |
nonsense |
probably null |
|
|
IGL03048:Foxp4
|
UTSW |
17 |
48,191,765 (GRCm39) |
missense |
unknown |
|
|
R0138:Foxp4
|
UTSW |
17 |
48,180,104 (GRCm39) |
missense |
unknown |
|
|
R1180:Foxp4
|
UTSW |
17 |
48,191,278 (GRCm39) |
splice site |
probably benign |
|
|
R1282:Foxp4
|
UTSW |
17 |
48,186,568 (GRCm39) |
missense |
unknown |
|
|
R1494:Foxp4
|
UTSW |
17 |
48,191,278 (GRCm39) |
splice site |
probably benign |
|
|
R1845:Foxp4
|
UTSW |
17 |
48,188,884 (GRCm39) |
missense |
probably null |
|
|
R1956:Foxp4
|
UTSW |
17 |
48,186,796 (GRCm39) |
missense |
unknown |
|
|
R1958:Foxp4
|
UTSW |
17 |
48,186,796 (GRCm39) |
missense |
unknown |
|
|
R1969:Foxp4
|
UTSW |
17 |
48,186,796 (GRCm39) |
missense |
unknown |
|
|
R1970:Foxp4
|
UTSW |
17 |
48,186,796 (GRCm39) |
missense |
unknown |
|
|
R1971:Foxp4
|
UTSW |
17 |
48,186,796 (GRCm39) |
missense |
unknown |
|
|
R2240:Foxp4
|
UTSW |
17 |
48,182,201 (GRCm39) |
missense |
unknown |
|
|
R3847:Foxp4
|
UTSW |
17 |
48,186,453 (GRCm39) |
missense |
unknown |
|
|
R3848:Foxp4
|
UTSW |
17 |
48,186,453 (GRCm39) |
missense |
unknown |
|
|
R3849:Foxp4
|
UTSW |
17 |
48,186,453 (GRCm39) |
missense |
unknown |
|
|
R4345:Foxp4
|
UTSW |
17 |
48,185,573 (GRCm39) |
missense |
unknown |
|
|
R5572:Foxp4
|
UTSW |
17 |
48,191,804 (GRCm39) |
missense |
unknown |
|
|
R5726:Foxp4
|
UTSW |
17 |
48,180,033 (GRCm39) |
missense |
unknown |
|
|
R6386:Foxp4
|
UTSW |
17 |
48,189,387 (GRCm39) |
missense |
unknown |
|
|
R6510:Foxp4
|
UTSW |
17 |
48,186,335 (GRCm39) |
missense |
unknown |
|
|
R8087:Foxp4
|
UTSW |
17 |
48,215,355 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8290:Foxp4
|
UTSW |
17 |
48,191,778 (GRCm39) |
missense |
unknown |
|
|
R9272:Foxp4
|
UTSW |
17 |
48,180,033 (GRCm39) |
missense |
unknown |
|
|
X0025:Foxp4
|
UTSW |
17 |
48,188,890 (GRCm39) |
missense |
unknown |
|
|
| Predicted Primers |
PCR Primer
(F):5'- GATGGGATGACAGGAATCTGCTGC -3'
(R):5'- TGACCTCACTTTAGAACTCCGAGGG -3'
Sequencing Primer
(F):5'- ggggagaaaagatgggtagg -3'
(R):5'- CTTTAGAACTCCGAGGGAGCAG -3'
|
| Posted On |
2014-01-29 |
Incidental Mutation