Mutagenetix > Incidental Mutation

Incidental Mutation 'R1908:Prdm15'

210097

Institutional Source

Beutler Lab

Gene Symbol

Prdm15

Ensembl Gene

ENSMUSG00000014039

Gene Name

PR domain containing 15

Synonyms

Zfp298, E130018M06Rik

MMRRC Submission

039927-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1908 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

97791467-97851850 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 97837685 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 58 (D58E)

Ref Sequence

ENSEMBL: ENSMUSP00000120497 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095849] [ENSMUST00000119200] [ENSMUST00000121584] [ENSMUST00000135505] [ENSMUST00000142295]

AlphaFold

E9Q8T2

Predicted Effect

probably benign
Transcript: ENSMUST00000095849
AA Change: D84E

PolyPhen 2 Score 0.147 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000093533
Gene: ENSMUSG00000014039
AA Change: D84E

Domain	Start	End	E-Value	Type
SET	75	191	5.96e-1	SMART
ZnF_C2H2	223	245	3.99e0	SMART
low complexity region	290	303	N/A	INTRINSIC
ZnF_C2H2	402	424	3.89e-3	SMART
ZnF_C2H2	434	457	2.75e-3	SMART
ZnF_C2H2	468	488	1.88e2	SMART
ZnF_C2H2	495	517	5.42e-2	SMART
ZnF_C2H2	522	544	1.36e-2	SMART
ZnF_C2H2	571	593	6.23e-2	SMART
ZnF_C2H2	598	620	2.75e-3	SMART
low complexity region	642	657	N/A	INTRINSIC
ZnF_C2H2	661	684	2.17e-1	SMART
ZnF_C2H2	689	711	3.24e0	SMART
ZnF_C2H2	725	747	1.38e-3	SMART
ZnF_C2H2	753	775	5.67e-5	SMART
ZnF_C2H2	781	803	3.11e-2	SMART
ZnF_C2H2	809	831	8.34e-3	SMART
ZnF_C2H2	837	859	4.79e-3	SMART
ZnF_C2H2	865	888	4.79e-3	SMART
ZnF_C2H2	894	917	5.06e-2	SMART
low complexity region	948	959	N/A	INTRINSIC
low complexity region	1148	1170	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000119200
AA Change: D58E

PolyPhen 2 Score 0.017 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000113002
Gene: ENSMUSG00000014039
AA Change: D58E

Domain	Start	End	E-Value	Type
PDB:3RAY\|A	7	92	1e-6	PDB
Blast:SET	49	110	7e-39	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000121584
AA Change: D58E

PolyPhen 2 Score 0.147 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000113791
Gene: ENSMUSG00000014039
AA Change: D58E

Domain	Start	End	E-Value	Type
SET	49	165	5.96e-1	SMART
ZnF_C2H2	197	219	3.99e0	SMART
low complexity region	264	277	N/A	INTRINSIC
ZnF_C2H2	376	398	3.89e-3	SMART
ZnF_C2H2	408	431	2.75e-3	SMART
ZnF_C2H2	442	462	1.88e2	SMART
ZnF_C2H2	469	491	5.42e-2	SMART
ZnF_C2H2	496	518	1.36e-2	SMART
ZnF_C2H2	545	567	6.23e-2	SMART
ZnF_C2H2	572	594	2.75e-3	SMART
low complexity region	616	631	N/A	INTRINSIC
ZnF_C2H2	635	658	2.17e-1	SMART
ZnF_C2H2	663	685	3.24e0	SMART
ZnF_C2H2	699	721	1.38e-3	SMART
ZnF_C2H2	727	749	5.67e-5	SMART
ZnF_C2H2	755	777	3.11e-2	SMART
ZnF_C2H2	783	805	8.34e-3	SMART
ZnF_C2H2	811	833	4.79e-3	SMART
ZnF_C2H2	839	862	4.79e-3	SMART
ZnF_C2H2	868	891	5.06e-2	SMART
low complexity region	922	933	N/A	INTRINSIC
low complexity region	1122	1144	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129331

Predicted Effect

probably benign
Transcript: ENSMUST00000135505
AA Change: D84E

PolyPhen 2 Score 0.147 (Sensitivity: 0.92; Specificity: 0.87)

Predicted Effect

probably benign
Transcript: ENSMUST00000142295
AA Change: D58E

PolyPhen 2 Score 0.268 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000120497
Gene: ENSMUSG00000014039
AA Change: D58E

Domain	Start	End	E-Value	Type
SET	49	165	5.96e-1	SMART
low complexity region	230	243	N/A	INTRINSIC
ZnF_C2H2	342	364	3.89e-3	SMART
ZnF_C2H2	369	392	2.75e-3	SMART
ZnF_C2H2	403	423	1.88e2	SMART

Coding Region Coverage

1x: 97.3%
3x: 96.8%
10x: 95.4%
20x: 93.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011H14Rik	G	T	14: 49,226,575 (GRCm38)	D292E	probably damaging	Het
4931406P16Rik	T	A	7: 34,258,036 (GRCm38)	I59L	probably benign	Het
Abca8b	C	A	11: 109,957,098 (GRCm38)	L852F	possibly damaging	Het
Abcc6	T	C	7: 46,020,134 (GRCm38)		probably null	Het
Alg11	T	G	8: 22,065,568 (GRCm38)	C240G	probably damaging	Het
Aox1	A	G	1: 58,102,624 (GRCm38)	I1190V	probably damaging	Het
Apc2	T	G	10: 80,314,844 (GRCm38)	S1911A	probably benign	Het
Arfgef3	T	C	10: 18,652,763 (GRCm38)	D292G	possibly damaging	Het
Arhgef4	C	A	1: 34,724,259 (GRCm38)	S865R	probably benign	Het
Ass1	T	A	2: 31,493,148 (GRCm38)	Y190*	probably null	Het
B4galnt3	A	T	6: 120,210,090 (GRCm38)		probably null	Het
Btnl10	C	A	11: 58,920,541 (GRCm38)	P230Q	possibly damaging	Het
C3	A	G	17: 57,209,489 (GRCm38)	Y1348H	probably damaging	Het
Cebpz	A	T	17: 78,934,907 (GRCm38)	Y439*	probably null	Het
Cic	C	A	7: 25,286,840 (GRCm38)	T1229K	probably damaging	Het
Clip4	T	C	17: 71,837,749 (GRCm38)	S524P	probably damaging	Het
Col6a3	A	C	1: 90,811,699 (GRCm38)	I269R	probably damaging	Het
Dbh	C	T	2: 27,181,494 (GRCm38)	T533I	possibly damaging	Het
Dcaf17	A	T	2: 71,060,369 (GRCm38)	R83*	probably null	Het
Dnah1	A	G	14: 31,262,558 (GRCm38)	L3923P	probably damaging	Het
Dnah7a	A	T	1: 53,631,562 (GRCm38)	D510E	probably benign	Het
Dock6	A	G	9: 21,841,629 (GRCm38)	F296S	probably damaging	Het
Eif4enif1	T	C	11: 3,227,455 (GRCm38)	S341P	probably damaging	Het
Epb41l1	G	T	2: 156,510,817 (GRCm38)	G461V	possibly damaging	Het
Epg5	T	A	18: 77,959,032 (GRCm38)	D555E	probably benign	Het
Fes	T	C	7: 80,386,861 (GRCm38)	R113G	probably damaging	Het
Gm10684	A	G	9: 45,110,213 (GRCm38)		probably benign	Het
Gm12185	T	C	11: 48,915,404 (GRCm38)	E320G	probably benign	Het
Gm14412	G	T	2: 177,315,476 (GRCm38)	H209N	probably damaging	Het
Gm14412	A	C	2: 177,315,837 (GRCm38)	S88R	probably benign	Het
Grhl1	T	A	12: 24,608,556 (GRCm38)	L400Q	probably damaging	Het
Havcr1	T	A	11: 46,773,684 (GRCm38)	Y216*	probably null	Het
Hephl1	A	C	9: 15,074,124 (GRCm38)	Y745*	probably null	Het
Hmcn2	T	G	2: 31,411,910 (GRCm38)		probably null	Het
Hs3st6	A	G	17: 24,758,136 (GRCm38)	K197E	possibly damaging	Het
Ifi214	C	T	1: 173,529,511 (GRCm38)	V9I	probably benign	Het
Jakmip2	T	C	18: 43,567,144 (GRCm38)	T450A	probably benign	Het
Lrp4	T	A	2: 91,498,408 (GRCm38)	V1551D	possibly damaging	Het
Macf1	A	T	4: 123,457,841 (GRCm38)	H1634Q	possibly damaging	Het
Mcpt8	T	A	14: 56,083,834 (GRCm38)	I58F	probably benign	Het
Mga	T	A	2: 119,926,594 (GRCm38)	H1018Q	possibly damaging	Het
Myo10	T	A	15: 25,801,222 (GRCm38)	V1499E	probably damaging	Het
Myom2	G	T	8: 15,081,023 (GRCm38)	D320Y	probably damaging	Het
Olfr1220	G	A	2: 89,097,544 (GRCm38)	P128S	probably damaging	Het
Olfr1395	A	C	11: 49,148,274 (GRCm38)	N6H	possibly damaging	Het
Olfr458	C	T	6: 42,460,426 (GRCm38)	V198M	probably benign	Het
Olfr60	T	C	7: 140,345,465 (GRCm38)	I175V	probably benign	Het
Olfr74	A	T	2: 87,974,059 (GRCm38)	V202D	possibly damaging	Het
Olfr740	T	A	14: 50,453,838 (GRCm38)	M262K	probably damaging	Het
Pabpc4	G	T	4: 123,289,068 (GRCm38)	R166L	possibly damaging	Het
Pcdhb8	A	G	18: 37,355,962 (GRCm38)	E231G	possibly damaging	Het
Pomgnt2	A	T	9: 121,982,191 (GRCm38)	I508N	possibly damaging	Het
Ppp2r5e	C	G	12: 75,469,567 (GRCm38)	A239P	probably damaging	Het
Rgl2	A	G	17: 33,932,148 (GRCm38)	T117A	probably benign	Het
Rp1	A	G	1: 4,348,720 (GRCm38)	I723T	probably damaging	Het
Serpina3g	A	G	12: 104,241,277 (GRCm38)	E233G	probably damaging	Het
Skint6	T	A	4: 112,891,990 (GRCm38)	S798C	probably benign	Het
Slc35f1	T	C	10: 53,021,904 (GRCm38)	L137P	possibly damaging	Het
Slc6a20a	T	C	9: 123,656,308 (GRCm38)	N246S	probably damaging	Het
Slc7a2	T	C	8: 40,916,497 (GRCm38)	L663S	probably benign	Het
Slco1a4	A	G	6: 141,815,447 (GRCm38)		probably null	Het
Slit2	A	G	5: 48,281,988 (GRCm38)	T41A	probably damaging	Het
Smc2	T	C	4: 52,450,863 (GRCm38)	I227T	probably damaging	Het
Smg1	A	G	7: 118,154,199 (GRCm38)		probably benign	Het
Ssu2	A	T	6: 112,384,427 (GRCm38)	L23M	probably benign	Het
St5	G	A	7: 109,525,326 (GRCm38)	Q686*	probably null	Het
Syne2	A	G	12: 76,094,279 (GRCm38)		probably null	Het
Tekt1	T	C	11: 72,351,935 (GRCm38)	T249A	probably benign	Het
Tfr2	T	C	5: 137,571,692 (GRCm38)	V120A	probably benign	Het
Thsd7b	C	T	1: 129,678,109 (GRCm38)	P529L	probably damaging	Het
Tll1	C	T	8: 64,025,107 (GRCm38)	D871N	probably damaging	Het
Tlr11	A	C	14: 50,361,207 (GRCm38)	I217L	probably benign	Het
Tmem87b	T	A	2: 128,831,559 (GRCm38)	V241D	probably damaging	Het
Tshz2	T	A	2: 169,885,545 (GRCm38)	I218N	possibly damaging	Het
Vmn1r18	A	T	6: 57,390,041 (GRCm38)	I176N	possibly damaging	Het
Vmn2r68	T	A	7: 85,234,052 (GRCm38)	H164L	probably benign	Het
Vmn2r74	T	C	7: 85,952,442 (GRCm38)	T663A	probably benign	Het
Vmn2r8	T	C	5: 108,797,570 (GRCm38)	T724A	probably benign	Het
Wdr11	T	C	7: 129,605,230 (GRCm38)	V289A	possibly damaging	Het
Zfp62	T	A	11: 49,216,220 (GRCm38)	D379E	probably damaging	Het
Zfp78	C	T	7: 6,378,898 (GRCm38)	P316S	probably damaging	Het
Zfyve27	T	G	19: 42,171,548 (GRCm38)	M1R	probably null	Het
Zkscan8	G	A	13: 21,525,155 (GRCm38)	P191L	probably damaging	Het

Other mutations in Prdm15

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00973:Prdm15	APN	16	97,806,167 (GRCm38)	splice site	probably benign
IGL01325:Prdm15	APN	16	97,806,517 (GRCm38)	missense	probably damaging	1.00
IGL02195:Prdm15	APN	16	97,835,829 (GRCm38)	missense	probably damaging	1.00
IGL02473:Prdm15	APN	16	97,837,605 (GRCm38)	splice site	probably null
IGL02502:Prdm15	APN	16	97,839,339 (GRCm38)	missense	probably damaging	1.00
IGL02604:Prdm15	APN	16	97,821,942 (GRCm38)	missense	probably benign
R0408:Prdm15	UTSW	16	97,835,786 (GRCm38)	missense	possibly damaging	0.92
R0437:Prdm15	UTSW	16	97,812,559 (GRCm38)	missense	probably benign	0.00
R0497:Prdm15	UTSW	16	97,794,334 (GRCm38)	missense	possibly damaging	0.63
R0590:Prdm15	UTSW	16	97,797,761 (GRCm38)	missense	possibly damaging	0.95
R0630:Prdm15	UTSW	16	97,837,707 (GRCm38)	missense	probably null	1.00
R0661:Prdm15	UTSW	16	97,829,682 (GRCm38)	missense	probably benign	0.34
R0718:Prdm15	UTSW	16	97,812,633 (GRCm38)	missense	possibly damaging	0.89
R1144:Prdm15	UTSW	16	97,808,708 (GRCm38)	missense	probably damaging	1.00
R1240:Prdm15	UTSW	16	97,837,600 (GRCm38)	missense	probably damaging	0.98
R1605:Prdm15	UTSW	16	97,839,306 (GRCm38)	missense	probably damaging	1.00
R2081:Prdm15	UTSW	16	97,803,780 (GRCm38)	nonsense	probably null
R2208:Prdm15	UTSW	16	97,799,264 (GRCm38)	splice site	probably null
R3787:Prdm15	UTSW	16	97,797,745 (GRCm38)	missense	probably benign	0.00
R3890:Prdm15	UTSW	16	97,799,571 (GRCm38)	missense	probably damaging	1.00
R4326:Prdm15	UTSW	16	97,806,515 (GRCm38)	missense	probably damaging	1.00
R4728:Prdm15	UTSW	16	97,821,786 (GRCm38)	missense	probably benign	0.04
R4952:Prdm15	UTSW	16	97,806,077 (GRCm38)	missense	probably damaging	0.99
R4998:Prdm15	UTSW	16	97,794,489 (GRCm38)	missense	probably damaging	0.97
R5225:Prdm15	UTSW	16	97,808,675 (GRCm38)	missense	probably damaging	1.00
R5505:Prdm15	UTSW	16	97,816,983 (GRCm38)	missense	possibly damaging	0.76
R5628:Prdm15	UTSW	16	97,799,623 (GRCm38)	missense	probably damaging	0.98
R5721:Prdm15	UTSW	16	97,807,096 (GRCm38)	missense	possibly damaging	0.74
R5873:Prdm15	UTSW	16	97,808,689 (GRCm38)	missense	probably damaging	1.00
R5980:Prdm15	UTSW	16	97,812,570 (GRCm38)	nonsense	probably null
R6311:Prdm15	UTSW	16	97,799,055 (GRCm38)	missense	probably null	0.08
R6540:Prdm15	UTSW	16	97,835,805 (GRCm38)	missense	probably benign	0.13
R7053:Prdm15	UTSW	16	97,794,542 (GRCm38)	nonsense	probably null
R7241:Prdm15	UTSW	16	97,795,741 (GRCm38)	missense	possibly damaging	0.50
R7468:Prdm15	UTSW	16	97,835,642 (GRCm38)	nonsense	probably null
R7473:Prdm15	UTSW	16	97,821,846 (GRCm38)	missense	possibly damaging	0.68
R7762:Prdm15	UTSW	16	97,818,273 (GRCm38)	missense	probably benign	0.00
R7911:Prdm15	UTSW	16	97,812,592 (GRCm38)	missense	probably benign	0.35
R8053:Prdm15	UTSW	16	97,835,607 (GRCm38)	missense	probably benign	0.17
R8127:Prdm15	UTSW	16	97,837,710 (GRCm38)	missense	probably benign	0.24
R8213:Prdm15	UTSW	16	97,807,060 (GRCm38)	missense	probably damaging	1.00
R8708:Prdm15	UTSW	16	97,816,866 (GRCm38)	missense	unknown
R8768:Prdm15	UTSW	16	97,837,688 (GRCm38)	missense	probably benign
R9000:Prdm15	UTSW	16	97,794,270 (GRCm38)	missense	probably benign	0.03
R9513:Prdm15	UTSW	16	97,806,504 (GRCm38)	missense	probably damaging	1.00
R9583:Prdm15	UTSW	16	97,821,942 (GRCm38)	missense	probably benign
RF002:Prdm15	UTSW	16	97,799,629 (GRCm38)	missense	probably damaging	1.00
RF021:Prdm15	UTSW	16	97,808,756 (GRCm38)	missense	probably damaging	1.00
Z1177:Prdm15	UTSW	16	97,816,959 (GRCm38)	missense	possibly damaging	0.54

Predicted Primers

PCR Primer
(F):5'- AAGTCATGCAGCCCCAGATTC -3'
(R):5'- TCCCTTAGTCTATGGGCTCTGG -3'

Sequencing Primer
(F):5'- ATGCAGCCCCAGATTCTGAAGG -3'
(R):5'- AGGCCAGTCATGTTCCCATGTATG -3'

Posted On

2014-06-30