Mutagenetix > Incidental Mutation

Incidental Mutation 'R4480:Ifne'

331421

Institutional Source

Beutler Lab

Gene Symbol

Ifne

Ensembl Gene

ENSMUSG00000045364

Gene Name

interferon epsilon

Synonyms

Ifnt1, Ifne1

MMRRC Submission

041737-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4480 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

88797775-88798438 bp(-) (GRCm39)

Type of Mutation

makesense

DNA Base Change (assembly)

T to C at 88797838 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Stop codon to Tryptophan at position 193 (*193W)

Ref Sequence

ENSEMBL: ENSMUSP00000059199 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000056014]

AlphaFold

Q80ZF2

Predicted Effect

probably null
Transcript: ENSMUST00000056014
AA Change: *193W

SMART Domains

Protein: ENSMUSP00000059199
Gene: ENSMUSG00000045364
AA Change: *193W

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
low complexity region	37	51	N/A	INTRINSIC
IFabd	58	175	2.09e-22	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 94.8%

Validation Efficiency

95% (40/42)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased susceptibility to HSV-2 and Chlamydia infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 38 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc6	T	C	7: 45,654,663 (GRCm39)	T553A	possibly damaging	Het
Adgrb3	A	T	1: 25,150,829 (GRCm39)	F1135I	probably damaging	Het
Arfgef3	A	T	10: 18,476,348 (GRCm39)	F1490L	probably damaging	Het
Begain	A	G	12: 109,000,049 (GRCm39)	Y446H	probably damaging	Het
Cdh15	A	G	8: 123,591,415 (GRCm39)	H517R	probably benign	Het
Cemip2	A	G	19: 21,792,853 (GRCm39)	Q703R	probably benign	Het
D130040H23Rik	C	A	8: 69,755,155 (GRCm39)	H187N	possibly damaging	Het
Dip2b	C	T	15: 100,084,182 (GRCm39)	T935M	probably damaging	Het
Eif2s2	T	C	2: 154,730,190 (GRCm39)	T36A	probably benign	Het
Eif4g1	G	T	16: 20,497,593 (GRCm39)		probably benign	Het
Fat3	G	A	9: 15,909,567 (GRCm39)	S2145F	probably damaging	Het
Fbxo10	T	C	4: 45,048,470 (GRCm39)	Y555C	probably damaging	Het
Fpr2	C	T	17: 18,114,015 (GRCm39)	T337I	probably benign	Het
Frem3	A	T	8: 81,337,986 (GRCm39)	Q93L	probably benign	Het
Gapdh	A	G	6: 125,140,145 (GRCm39)	V119A	possibly damaging	Het
Gm3159	T	C	14: 4,398,584 (GRCm38)	Y92H	probably damaging	Het
Hkdc1	T	C	10: 62,227,151 (GRCm39)	I769V	probably benign	Het
Katna1	T	C	10: 7,614,594 (GRCm39)	V32A	probably damaging	Het
Nup107	T	C	10: 117,597,237 (GRCm39)	I673V	probably benign	Het
Nup188	T	A	2: 30,212,141 (GRCm39)		probably benign	Het
Obscn	T	C	11: 59,022,472 (GRCm39)	R758G	possibly damaging	Het
Or10g1	G	A	14: 52,647,765 (GRCm39)	A188V	probably damaging	Het
Or2t48	G	T	11: 58,420,627 (GRCm39)	P62T	probably damaging	Het
Pcdhb5	T	A	18: 37,453,805 (GRCm39)	S62T	probably benign	Het
Plekha5	T	C	6: 140,472,205 (GRCm39)	V44A	probably damaging	Het
Psg18	C	T	7: 18,084,787 (GRCm39)	S103N	probably benign	Het
Ptprcap	A	G	19: 4,206,223 (GRCm39)	E102G	probably benign	Het
Ptprs	A	G	17: 56,733,404 (GRCm39)	V804A	possibly damaging	Het
Rab35	C	A	5: 115,775,823 (GRCm39)	S34*	probably null	Het
Slco6d1	T	A	1: 98,435,299 (GRCm39)	Y671*	probably null	Het
Sostdc1	A	G	12: 36,367,165 (GRCm39)	I114V	probably damaging	Het
Tecta	A	G	9: 42,284,529 (GRCm39)	F852S	possibly damaging	Het
Tmem179	T	C	12: 112,469,737 (GRCm39)	E21G	probably benign	Het
Usp17la	T	A	7: 104,509,897 (GRCm39)	H167Q	probably benign	Het
Vps8	A	T	16: 21,363,986 (GRCm39)		probably benign	Het
Wdr17	A	G	8: 55,117,999 (GRCm39)		probably null	Het
Wdr73	T	C	7: 80,542,969 (GRCm39)	E213G	probably benign	Het
Zfp985	A	G	4: 147,668,536 (GRCm39)	D468G	probably benign	Het

Other mutations in Ifne

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00594:Ifne	APN	4	88,798,041 (GRCm39)	missense	probably benign	0.01
IGL00978:Ifne	APN	4	88,798,268 (GRCm39)	missense	probably benign	0.17
IGL02167:Ifne	APN	4	88,798,065 (GRCm39)	missense	possibly damaging	0.58
R0212:Ifne	UTSW	4	88,797,972 (GRCm39)	missense	possibly damaging	0.95
R0699:Ifne	UTSW	4	88,798,014 (GRCm39)	missense	probably benign	0.00
R1868:Ifne	UTSW	4	88,797,908 (GRCm39)	missense	probably damaging	1.00
R4865:Ifne	UTSW	4	88,797,942 (GRCm39)	missense	probably damaging	1.00
R6752:Ifne	UTSW	4	88,798,319 (GRCm39)	missense	probably benign	0.06
R7319:Ifne	UTSW	4	88,798,243 (GRCm39)	missense	probably damaging	0.98
R7413:Ifne	UTSW	4	88,797,840 (GRCm39)	makesense	probably null

Predicted Primers

PCR Primer
(F):5'- GGCAAAATGGATATTGCAATGC -3'
(R):5'- GAATACGTGGAGTCACTGGG -3'

Sequencing Primer
(F):5'- TGCATGCCATCTTAGAACACAG -3'
(R):5'- TCACTGGGTGGACTGAACG -3'

Posted On

2015-07-21