Mutagenetix > Incidental Mutation

Incidental Mutation 'R0254:Cdadc1'

34595

Institutional Source

Beutler Lab

Gene Symbol

Cdadc1

Ensembl Gene

ENSMUSG00000021982

Gene Name

cytidine and dCMP deaminase domain containing 1

Synonyms

2310010M10Rik, NYD-SP15

MMRRC Submission

038485-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.143) question?

Stock #

R0254 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

59559388-59597959 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

T to C at 59575907 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000153357 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022555] [ENSMUST00000056997] [ENSMUST00000167100] [ENSMUST00000171683] [ENSMUST00000225595] [ENSMUST00000225839]

AlphaFold

Q8BMD5

Predicted Effect

probably benign
Transcript: ENSMUST00000022555

SMART Domains

Protein: ENSMUSP00000022555
Gene: ENSMUSG00000021982

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	73	153	9.2e-8	PFAM
Pfam:dCMP_cyt_deam_1	317	446	4.2e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000056997

SMART Domains

Protein: ENSMUSP00000052233
Gene: ENSMUSG00000021982

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	73	153	9.8e-8	PFAM
Pfam:dCMP_cyt_deam_1	317	446	4.6e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000167100

SMART Domains

Protein: ENSMUSP00000128022
Gene: ENSMUSG00000021982

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	74	153	4.9e-9	PFAM
Pfam:dCMP_cyt_deam_1	317	446	1.1e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171683

SMART Domains

Protein: ENSMUSP00000128064
Gene: ENSMUSG00000021982

Domain	Start	End	E-Value	Type
Pfam:dCMP_cyt_deam_1	74	153	1.4e-8	PFAM
Pfam:dCMP_cyt_deam_1	317	446	3e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000225595

Predicted Effect

probably benign
Transcript: ENSMUST00000225839

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

100% (100/100)

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700034J05Rik	T	A	6: 146,952,404 (GRCm38)	M252L	probably benign	Het
Abca6	A	G	11: 110,236,789 (GRCm38)	V314A	probably benign	Het
Abcb1b	A	T	5: 8,827,409 (GRCm38)	E656D	probably benign	Het
Abhd4	T	C	14: 54,263,234 (GRCm38)	I160T	probably benign	Het
Aco2	T	C	15: 81,889,356 (GRCm38)	V32A	probably damaging	Het
Actl6b	A	G	5: 137,554,144 (GRCm38)		probably benign	Het
Akap13	T	C	7: 75,736,604 (GRCm38)		probably benign	Het
Alpk3	A	T	7: 81,076,974 (GRCm38)	T136S	probably benign	Het
Ap1g1	G	T	8: 109,803,117 (GRCm38)	M56I	probably benign	Het
Arid2	C	T	15: 96,370,571 (GRCm38)	T855I	probably damaging	Het
Asprv1	T	C	6: 86,629,095 (GRCm38)	F308L	probably damaging	Het
Ass1	A	T	2: 31,514,819 (GRCm38)	N371Y	probably damaging	Het
Atp11b	T	A	3: 35,812,110 (GRCm38)	M378K	possibly damaging	Het
Atp1a3	T	C	7: 24,981,512 (GRCm38)		probably benign	Het
Blk	C	A	14: 63,380,804 (GRCm38)	A218S	probably benign	Het
C4b	T	A	17: 34,734,776 (GRCm38)	T953S	probably benign	Het
Cdca2	C	A	14: 67,677,178 (GRCm38)	L877F	probably damaging	Het
Ceacam10	G	T	7: 24,778,308 (GRCm38)	V83L	probably damaging	Het
Cep290	A	T	10: 100,514,574 (GRCm38)	I677F	probably benign	Het
Clip1	A	T	5: 123,617,332 (GRCm38)		probably benign	Het
Col11a2	G	T	17: 34,064,803 (GRCm38)		probably benign	Het
Coro1c	A	T	5: 113,845,252 (GRCm38)	V405D	probably benign	Het
Crebrf	A	G	17: 26,739,594 (GRCm38)	T13A	probably benign	Het
Cspg4	A	G	9: 56,897,410 (GRCm38)	E1835G	probably damaging	Het
Cubn	T	C	2: 13,424,694 (GRCm38)	N1332S	probably benign	Het
Cubn	T	C	2: 13,440,514 (GRCm38)	T1014A	possibly damaging	Het
Cubn	A	T	2: 13,476,035 (GRCm38)		probably null	Het
Efnb1	T	C	X: 99,137,028 (GRCm38)		probably benign	Het
Elf2	G	T	3: 51,308,190 (GRCm38)	P33Q	probably damaging	Het
Fap	C	T	2: 62,503,402 (GRCm38)	G633D	probably damaging	Het
Gm10288	T	C	3: 146,838,920 (GRCm38)		noncoding transcript	Het
Gm14139	G	A	2: 150,191,864 (GRCm38)	R35K	possibly damaging	Het
Gm7714	A	T	5: 88,282,371 (GRCm38)	H42L	possibly damaging	Het
Got2	T	C	8: 95,869,538 (GRCm38)	N318S	probably benign	Het
Guk1	A	T	11: 59,186,028 (GRCm38)	F76L	probably damaging	Het
H2-K1	A	T	17: 33,996,665 (GRCm38)		probably benign	Het
Helz2	C	A	2: 181,232,759 (GRCm38)	G1981C	probably damaging	Het
Hinfp	G	A	9: 44,298,239 (GRCm38)	H250Y	probably damaging	Het
Hnrnpm	C	T	17: 33,652,268 (GRCm38)		probably null	Het
Hsd11b2	T	A	8: 105,523,067 (GRCm38)	V270E	possibly damaging	Het
Igbp1b	A	T	6: 138,658,203 (GRCm38)	M81K	probably damaging	Het
Kif11	A	G	19: 37,411,509 (GRCm38)	T815A	probably benign	Het
Kit	G	A	5: 75,620,921 (GRCm38)	V337I	probably benign	Het
Klf11	T	C	12: 24,653,583 (GRCm38)	S6P	probably damaging	Het
Klk13	T	C	7: 43,723,821 (GRCm38)	V193A	probably benign	Het
Krt73	T	A	15: 101,799,889 (GRCm38)		probably benign	Het
L1td1	T	A	4: 98,737,182 (GRCm38)	L538*	probably null	Het
Macf1	A	G	4: 123,432,779 (GRCm38)	L2061P	probably damaging	Het
Mcm2	A	G	6: 88,884,016 (GRCm38)	I900T	probably damaging	Het
Med16	A	T	10: 79,900,200 (GRCm38)	N371K	possibly damaging	Het
Mepce	A	C	5: 137,785,436 (GRCm38)	D209E	possibly damaging	Het
Mrc2	C	G	11: 105,347,866 (GRCm38)	P1249R	probably benign	Het
Mx2	A	T	16: 97,556,095 (GRCm38)	I463L	probably benign	Het
Naaa	A	T	5: 92,265,135 (GRCm38)	N73K	probably damaging	Het
Nags	T	A	11: 102,147,945 (GRCm38)	L404Q	probably damaging	Het
Neb	A	G	2: 52,243,390 (GRCm38)	Y3379H	probably damaging	Het
Nhsl1	A	G	10: 18,472,985 (GRCm38)	E120G	probably damaging	Het
Olfr1276	A	C	2: 111,257,121 (GRCm38)	N2T	probably benign	Het
Olfr561	C	A	7: 102,774,869 (GRCm38)	S115*	probably null	Het
Olfr615	T	A	7: 103,560,622 (GRCm38)	Y48*	probably null	Het
Olfr643	T	C	7: 104,059,521 (GRCm38)	H27R	probably benign	Het
Olfr736	T	C	14: 50,393,079 (GRCm38)	S108P	probably damaging	Het
Pcnt	A	G	10: 76,392,580 (GRCm38)	F1584L	probably benign	Het
Pdgfra	G	A	5: 75,167,935 (GRCm38)	V243I	probably damaging	Het
Polr2a	T	C	11: 69,743,671 (GRCm38)	I689V	possibly damaging	Het
Ppfia4	C	A	1: 134,324,224 (GRCm38)		probably benign	Het
Prmt8	C	A	6: 127,711,808 (GRCm38)	V200L	probably damaging	Het
Prpf8	T	A	11: 75,506,362 (GRCm38)	I2007N	possibly damaging	Het
Ptpn6	T	C	6: 124,728,150 (GRCm38)	E230G	probably damaging	Het
R3hcc1l	G	A	19: 42,563,148 (GRCm38)	V195I	probably damaging	Het
Rb1cc1	C	T	1: 6,262,847 (GRCm38)	T1330I	probably damaging	Het
Reep3	G	T	10: 67,021,796 (GRCm38)	T172N	probably benign	Het
Rfwd3	A	G	8: 111,294,023 (GRCm38)	V236A	probably benign	Het
Rgs22	T	C	15: 36,104,552 (GRCm38)	I121V	probably damaging	Het
Robo1	T	A	16: 72,664,170 (GRCm38)	F11I	probably benign	Het
Rsrc2	A	G	5: 123,740,847 (GRCm38)		probably benign	Het
Rubcn	A	G	16: 32,847,946 (GRCm38)	V117A	probably benign	Het
Scamp1	T	G	13: 94,210,580 (GRCm38)	N192T	probably benign	Het
Scn8a	T	A	15: 101,018,364 (GRCm38)	I1218N	probably damaging	Het
Serinc1	A	G	10: 57,523,208 (GRCm38)	S200P	probably damaging	Het
Serpinb9f	T	A	13: 33,334,591 (GRCm38)	F358Y	probably damaging	Het
Slc12a5	T	C	2: 164,997,245 (GRCm38)		probably null	Het
Slc5a4b	T	C	10: 76,070,628 (GRCm38)	M386V	possibly damaging	Het
Smarca5	A	G	8: 80,704,700 (GRCm38)	F963L	probably benign	Het
Smchd1	A	T	17: 71,411,891 (GRCm38)	F828I	probably benign	Het
Stab2	G	T	10: 86,897,960 (GRCm38)	Q1333K	probably benign	Het
Svop	T	C	5: 114,038,539 (GRCm38)	S349G	probably benign	Het
Tdrd1	G	A	19: 56,842,566 (GRCm38)	S271N	probably benign	Het
Tec	G	A	5: 72,783,738 (GRCm38)	P159S	probably benign	Het
Tec	T	C	5: 72,763,556 (GRCm38)		probably benign	Het
Tfip11	G	A	5: 112,335,655 (GRCm38)	M645I	probably benign	Het
Thap12	A	T	7: 98,715,281 (GRCm38)	T219S	probably benign	Het
Tmem87a	C	T	2: 120,375,507 (GRCm38)	R329H	probably damaging	Het
Tpsab1	A	G	17: 25,343,745 (GRCm38)	Y227H	probably damaging	Het
Urah	G	A	7: 140,837,689 (GRCm38)	V114I	probably benign	Het
Wnt5a	G	A	14: 28,522,854 (GRCm38)	E353K	probably damaging	Het
Zfp101	A	T	17: 33,380,978 (GRCm38)	H601Q	possibly damaging	Het

Other mutations in Cdadc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00163:Cdadc1	APN	14	59,581,369 (GRCm38)	missense	probably damaging	1.00
IGL01897:Cdadc1	APN	14	59,592,537 (GRCm38)	critical splice acceptor site	probably null
IGL02648:Cdadc1	APN	14	59,586,363 (GRCm38)	missense	probably damaging	1.00
IGL02720:Cdadc1	APN	14	59,586,047 (GRCm38)	missense	probably damaging	1.00
R0470:Cdadc1	UTSW	14	59,573,841 (GRCm38)	splice site	probably benign
R0554:Cdadc1	UTSW	14	59,586,452 (GRCm38)	missense	probably damaging	1.00
R1462:Cdadc1	UTSW	14	59,575,858 (GRCm38)	missense	probably damaging	1.00
R1462:Cdadc1	UTSW	14	59,575,858 (GRCm38)	missense	probably damaging	1.00
R1540:Cdadc1	UTSW	14	59,586,092 (GRCm38)	missense	probably damaging	1.00
R1540:Cdadc1	UTSW	14	59,586,083 (GRCm38)	missense	probably damaging	1.00
R1649:Cdadc1	UTSW	14	59,573,793 (GRCm38)	missense	probably damaging	1.00
R1900:Cdadc1	UTSW	14	59,586,532 (GRCm38)	missense	probably damaging	1.00
R1934:Cdadc1	UTSW	14	59,589,860 (GRCm38)	missense	possibly damaging	0.91
R1976:Cdadc1	UTSW	14	59,573,768 (GRCm38)	missense	probably damaging	1.00
R2061:Cdadc1	UTSW	14	59,581,334 (GRCm38)	missense	probably damaging	1.00
R2136:Cdadc1	UTSW	14	59,568,044 (GRCm38)	splice site	probably null
R2147:Cdadc1	UTSW	14	59,597,753 (GRCm38)	critical splice donor site	probably null
R2929:Cdadc1	UTSW	14	59,597,835 (GRCm38)	start codon destroyed	probably null	0.70
R2991:Cdadc1	UTSW	14	59,586,072 (GRCm38)	missense	possibly damaging	0.68
R4179:Cdadc1	UTSW	14	59,592,486 (GRCm38)	missense	probably benign	0.12
R4621:Cdadc1	UTSW	14	59,586,555 (GRCm38)	missense	probably benign	0.00
R4814:Cdadc1	UTSW	14	59,568,991 (GRCm38)	frame shift	probably null
R4816:Cdadc1	UTSW	14	59,568,991 (GRCm38)	frame shift	probably null
R4817:Cdadc1	UTSW	14	59,568,991 (GRCm38)	frame shift	probably null
R4872:Cdadc1	UTSW	14	59,564,524 (GRCm38)	missense	probably benign	0.04
R5448:Cdadc1	UTSW	14	59,573,826 (GRCm38)	missense	possibly damaging	0.94
R5642:Cdadc1	UTSW	14	59,589,923 (GRCm38)	missense	possibly damaging	0.95
R5732:Cdadc1	UTSW	14	59,596,911 (GRCm38)	missense	probably damaging	0.99
R6472:Cdadc1	UTSW	14	59,586,042 (GRCm38)	missense	probably damaging	0.99
R6501:Cdadc1	UTSW	14	59,586,449 (GRCm38)	missense	probably benign	0.00
R7332:Cdadc1	UTSW	14	59,575,764 (GRCm38)	missense	possibly damaging	0.63
R7763:Cdadc1	UTSW	14	59,573,834 (GRCm38)	missense	probably damaging	1.00
R8978:Cdadc1	UTSW	14	59,575,748 (GRCm38)	missense	probably damaging	1.00
X0064:Cdadc1	UTSW	14	59,575,854 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTAAATGTCAAAGCGTTCTGCTCCG -3'
(R):5'- AGTAGCCGAGAAGCAGTTATTGATGTG -3'

Sequencing Primer
(F):5'- TTGTCATCCATGTGCGGGAA -3'
(R):5'- cctctgctgtgctgattcc -3'

Posted On

2013-05-09