Incidental Mutation 'R0254:Prpf8'
ID 34585
Institutional Source Beutler Lab
Gene Symbol Prpf8
Ensembl Gene ENSMUSG00000020850
Gene Name pre-mRNA processing factor 8
Synonyms Sfprp8l, D11Bwg0410e, DBF3/PRP8, Prp8
MMRRC Submission 038485-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.959) question?
Stock # R0254 (G1)
Quality Score 204
Status Not validated
Chromosome 11
Chromosomal Location 75486816-75509449 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 75506362 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Asparagine at position 2007 (I2007N)
Ref Sequence ENSEMBL: ENSMUSP00000099568 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000018449] [ENSMUST00000042972] [ENSMUST00000102510]
AlphaFold Q99PV0
Predicted Effect possibly damaging
Transcript: ENSMUST00000018449
AA Change: I2007N

PolyPhen 2 Score 0.929 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000018449
Gene: ENSMUSG00000020850
AA Change: I2007N

DomainStartEndE-ValueType
Pfam:PRO8NT 58 209 1.6e-84 PFAM
low complexity region 369 388 N/A INTRINSIC
Pfam:PROCN 393 801 3.6e-226 PFAM
low complexity region 802 814 N/A INTRINSIC
Pfam:RRM_4 986 1079 7.1e-49 PFAM
Pfam:U5_2-snRNA_bdg 1208 1343 1.9e-73 PFAM
Pfam:U6-snRNA_bdg 1442 1601 3.7e-97 PFAM
Pfam:PRP8_domainIV 1760 1990 1.5e-132 PFAM
JAB_MPN 2099 2233 9.02e-30 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000042972
SMART Domains Protein: ENSMUSP00000037238
Gene: ENSMUSG00000038195

DomainStartEndE-ValueType
low complexity region 14 24 N/A INTRINSIC
Pfam:Jnk-SapK_ap_N 27 195 2.1e-16 PFAM
Pfam:RILP 223 281 1.1e-21 PFAM
low complexity region 289 298 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000102510
AA Change: I2007N

PolyPhen 2 Score 0.929 (Sensitivity: 0.81; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000099568
Gene: ENSMUSG00000020850
AA Change: I2007N

DomainStartEndE-ValueType
Pfam:PRO8NT 58 209 1.6e-90 PFAM
low complexity region 369 388 N/A INTRINSIC
Pfam:PROCN 395 801 2.9e-239 PFAM
low complexity region 802 814 N/A INTRINSIC
Pfam:RRM_4 986 1077 1.5e-51 PFAM
Pfam:U5_2-snRNA_bdg 1210 1343 1.1e-77 PFAM
Pfam:U6-snRNA_bdg 1442 1600 4.2e-97 PFAM
Pfam:PRP8_domainIV 1760 1989 9.8e-134 PFAM
JAB_MPN 2099 2233 9.02e-30 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156923
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.1%
  • 20x: 91.7%
Validation Efficiency 100% (100/100)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pre-mRNA splicing occurs in 2 sequential transesterification steps. The protein encoded by this gene is a component of both U2- and U12-dependent spliceosomes, and found to be essential for the catalytic step II in pre-mRNA splicing process. It contains several WD repeats, which function in protein-protein interactions. This protein has a sequence similarity to yeast Prp8 protein. This gene is a candidate gene for autosomal dominant retinitis pigmentosa. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice that are either heterozygous or homozygous for a knock-in allele exhibit abnormal retinal pigment epithelium morphology and late-onset retinal degeneration. These changes are more severe in homozygous mutant mice. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700034J05Rik T A 6: 146,952,404 (GRCm38) M252L probably benign Het
Abca6 A G 11: 110,236,789 (GRCm38) V314A probably benign Het
Abcb1b A T 5: 8,827,409 (GRCm38) E656D probably benign Het
Abhd4 T C 14: 54,263,234 (GRCm38) I160T probably benign Het
Aco2 T C 15: 81,889,356 (GRCm38) V32A probably damaging Het
Actl6b A G 5: 137,554,144 (GRCm38) probably benign Het
Akap13 T C 7: 75,736,604 (GRCm38) probably benign Het
Alpk3 A T 7: 81,076,974 (GRCm38) T136S probably benign Het
Ap1g1 G T 8: 109,803,117 (GRCm38) M56I probably benign Het
Arid2 C T 15: 96,370,571 (GRCm38) T855I probably damaging Het
Asprv1 T C 6: 86,629,095 (GRCm38) F308L probably damaging Het
Ass1 A T 2: 31,514,819 (GRCm38) N371Y probably damaging Het
Atp11b T A 3: 35,812,110 (GRCm38) M378K possibly damaging Het
Atp1a3 T C 7: 24,981,512 (GRCm38) probably benign Het
Blk C A 14: 63,380,804 (GRCm38) A218S probably benign Het
C4b T A 17: 34,734,776 (GRCm38) T953S probably benign Het
Cdadc1 T C 14: 59,575,907 (GRCm38) probably benign Het
Cdca2 C A 14: 67,677,178 (GRCm38) L877F probably damaging Het
Ceacam10 G T 7: 24,778,308 (GRCm38) V83L probably damaging Het
Cep290 A T 10: 100,514,574 (GRCm38) I677F probably benign Het
Clip1 A T 5: 123,617,332 (GRCm38) probably benign Het
Col11a2 G T 17: 34,064,803 (GRCm38) probably benign Het
Coro1c A T 5: 113,845,252 (GRCm38) V405D probably benign Het
Crebrf A G 17: 26,739,594 (GRCm38) T13A probably benign Het
Cspg4 A G 9: 56,897,410 (GRCm38) E1835G probably damaging Het
Cubn T C 2: 13,424,694 (GRCm38) N1332S probably benign Het
Cubn T C 2: 13,440,514 (GRCm38) T1014A possibly damaging Het
Cubn A T 2: 13,476,035 (GRCm38) probably null Het
Efnb1 T C X: 99,137,028 (GRCm38) probably benign Het
Elf2 G T 3: 51,308,190 (GRCm38) P33Q probably damaging Het
Fap C T 2: 62,503,402 (GRCm38) G633D probably damaging Het
Gm10288 T C 3: 146,838,920 (GRCm38) noncoding transcript Het
Gm14139 G A 2: 150,191,864 (GRCm38) R35K possibly damaging Het
Gm7714 A T 5: 88,282,371 (GRCm38) H42L possibly damaging Het
Got2 T C 8: 95,869,538 (GRCm38) N318S probably benign Het
Guk1 A T 11: 59,186,028 (GRCm38) F76L probably damaging Het
H2-K1 A T 17: 33,996,665 (GRCm38) probably benign Het
Helz2 C A 2: 181,232,759 (GRCm38) G1981C probably damaging Het
Hinfp G A 9: 44,298,239 (GRCm38) H250Y probably damaging Het
Hnrnpm C T 17: 33,652,268 (GRCm38) probably null Het
Hsd11b2 T A 8: 105,523,067 (GRCm38) V270E possibly damaging Het
Igbp1b A T 6: 138,658,203 (GRCm38) M81K probably damaging Het
Kif11 A G 19: 37,411,509 (GRCm38) T815A probably benign Het
Kit G A 5: 75,620,921 (GRCm38) V337I probably benign Het
Klf11 T C 12: 24,653,583 (GRCm38) S6P probably damaging Het
Klk13 T C 7: 43,723,821 (GRCm38) V193A probably benign Het
Krt73 T A 15: 101,799,889 (GRCm38) probably benign Het
L1td1 T A 4: 98,737,182 (GRCm38) L538* probably null Het
Macf1 A G 4: 123,432,779 (GRCm38) L2061P probably damaging Het
Mcm2 A G 6: 88,884,016 (GRCm38) I900T probably damaging Het
Med16 A T 10: 79,900,200 (GRCm38) N371K possibly damaging Het
Mepce A C 5: 137,785,436 (GRCm38) D209E possibly damaging Het
Mrc2 C G 11: 105,347,866 (GRCm38) P1249R probably benign Het
Mx2 A T 16: 97,556,095 (GRCm38) I463L probably benign Het
Naaa A T 5: 92,265,135 (GRCm38) N73K probably damaging Het
Nags T A 11: 102,147,945 (GRCm38) L404Q probably damaging Het
Neb A G 2: 52,243,390 (GRCm38) Y3379H probably damaging Het
Nhsl1 A G 10: 18,472,985 (GRCm38) E120G probably damaging Het
Olfr1276 A C 2: 111,257,121 (GRCm38) N2T probably benign Het
Olfr561 C A 7: 102,774,869 (GRCm38) S115* probably null Het
Olfr615 T A 7: 103,560,622 (GRCm38) Y48* probably null Het
Olfr643 T C 7: 104,059,521 (GRCm38) H27R probably benign Het
Olfr736 T C 14: 50,393,079 (GRCm38) S108P probably damaging Het
Pcnt A G 10: 76,392,580 (GRCm38) F1584L probably benign Het
Pdgfra G A 5: 75,167,935 (GRCm38) V243I probably damaging Het
Polr2a T C 11: 69,743,671 (GRCm38) I689V possibly damaging Het
Ppfia4 C A 1: 134,324,224 (GRCm38) probably benign Het
Prmt8 C A 6: 127,711,808 (GRCm38) V200L probably damaging Het
Ptpn6 T C 6: 124,728,150 (GRCm38) E230G probably damaging Het
R3hcc1l G A 19: 42,563,148 (GRCm38) V195I probably damaging Het
Rb1cc1 C T 1: 6,262,847 (GRCm38) T1330I probably damaging Het
Reep3 G T 10: 67,021,796 (GRCm38) T172N probably benign Het
Rfwd3 A G 8: 111,294,023 (GRCm38) V236A probably benign Het
Rgs22 T C 15: 36,104,552 (GRCm38) I121V probably damaging Het
Robo1 T A 16: 72,664,170 (GRCm38) F11I probably benign Het
Rsrc2 A G 5: 123,740,847 (GRCm38) probably benign Het
Rubcn A G 16: 32,847,946 (GRCm38) V117A probably benign Het
Scamp1 T G 13: 94,210,580 (GRCm38) N192T probably benign Het
Scn8a T A 15: 101,018,364 (GRCm38) I1218N probably damaging Het
Serinc1 A G 10: 57,523,208 (GRCm38) S200P probably damaging Het
Serpinb9f T A 13: 33,334,591 (GRCm38) F358Y probably damaging Het
Slc12a5 T C 2: 164,997,245 (GRCm38) probably null Het
Slc5a4b T C 10: 76,070,628 (GRCm38) M386V possibly damaging Het
Smarca5 A G 8: 80,704,700 (GRCm38) F963L probably benign Het
Smchd1 A T 17: 71,411,891 (GRCm38) F828I probably benign Het
Stab2 G T 10: 86,897,960 (GRCm38) Q1333K probably benign Het
Svop T C 5: 114,038,539 (GRCm38) S349G probably benign Het
Tdrd1 G A 19: 56,842,566 (GRCm38) S271N probably benign Het
Tec G A 5: 72,783,738 (GRCm38) P159S probably benign Het
Tec T C 5: 72,763,556 (GRCm38) probably benign Het
Tfip11 G A 5: 112,335,655 (GRCm38) M645I probably benign Het
Thap12 A T 7: 98,715,281 (GRCm38) T219S probably benign Het
Tmem87a C T 2: 120,375,507 (GRCm38) R329H probably damaging Het
Tpsab1 A G 17: 25,343,745 (GRCm38) Y227H probably damaging Het
Urah G A 7: 140,837,689 (GRCm38) V114I probably benign Het
Wnt5a G A 14: 28,522,854 (GRCm38) E353K probably damaging Het
Zfp101 A T 17: 33,380,978 (GRCm38) H601Q possibly damaging Het
Other mutations in Prpf8
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01375:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01376:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01393:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01395:Prpf8 APN 11 75,494,295 (GRCm38) missense possibly damaging 0.94
IGL01554:Prpf8 APN 11 75,495,646 (GRCm38) missense probably damaging 1.00
IGL01560:Prpf8 APN 11 75,490,406 (GRCm38) missense possibly damaging 0.55
IGL01886:Prpf8 APN 11 75,495,744 (GRCm38) missense probably benign 0.32
IGL01946:Prpf8 APN 11 75,499,992 (GRCm38) missense probably damaging 1.00
IGL02022:Prpf8 APN 11 75,501,834 (GRCm38) nonsense probably null
IGL02077:Prpf8 APN 11 75,495,809 (GRCm38) missense probably damaging 0.96
IGL02141:Prpf8 APN 11 75,490,672 (GRCm38) missense possibly damaging 0.68
IGL02455:Prpf8 APN 11 75,509,258 (GRCm38) missense probably benign 0.32
cutter UTSW 11 75,495,426 (GRCm38) splice site probably null
BB009:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
BB019:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
PIT4514001:Prpf8 UTSW 11 75,496,355 (GRCm38) missense possibly damaging 0.53
R0270:Prpf8 UTSW 11 75,505,249 (GRCm38) missense probably damaging 0.99
R0504:Prpf8 UTSW 11 75,501,942 (GRCm38) splice site probably benign
R0573:Prpf8 UTSW 11 75,490,654 (GRCm38) missense probably damaging 1.00
R0613:Prpf8 UTSW 11 75,503,444 (GRCm38) missense probably damaging 1.00
R0893:Prpf8 UTSW 11 75,493,949 (GRCm38) missense probably damaging 1.00
R0967:Prpf8 UTSW 11 75,494,430 (GRCm38) missense probably damaging 1.00
R0975:Prpf8 UTSW 11 75,508,674 (GRCm38) unclassified probably benign
R1123:Prpf8 UTSW 11 75,495,285 (GRCm38) missense probably damaging 1.00
R1183:Prpf8 UTSW 11 75,490,330 (GRCm38) missense possibly damaging 0.95
R1857:Prpf8 UTSW 11 75,495,423 (GRCm38) critical splice donor site probably null
R1901:Prpf8 UTSW 11 75,504,744 (GRCm38) missense probably damaging 0.99
R1950:Prpf8 UTSW 11 75,496,511 (GRCm38) missense possibly damaging 0.72
R2116:Prpf8 UTSW 11 75,487,721 (GRCm38) missense possibly damaging 0.51
R2147:Prpf8 UTSW 11 75,490,531 (GRCm38) missense probably benign
R2185:Prpf8 UTSW 11 75,487,113 (GRCm38) nonsense probably null
R2271:Prpf8 UTSW 11 75,495,363 (GRCm38) missense probably damaging 1.00
R2272:Prpf8 UTSW 11 75,495,363 (GRCm38) missense probably damaging 1.00
R2898:Prpf8 UTSW 11 75,496,034 (GRCm38) missense probably benign 0.00
R3744:Prpf8 UTSW 11 75,506,721 (GRCm38) splice site probably null
R3893:Prpf8 UTSW 11 75,500,257 (GRCm38) missense possibly damaging 0.73
R4400:Prpf8 UTSW 11 75,490,702 (GRCm38) missense possibly damaging 0.63
R4510:Prpf8 UTSW 11 75,491,826 (GRCm38) missense probably damaging 0.96
R4511:Prpf8 UTSW 11 75,491,826 (GRCm38) missense probably damaging 0.96
R4784:Prpf8 UTSW 11 75,492,505 (GRCm38) missense probably damaging 1.00
R5089:Prpf8 UTSW 11 75,509,228 (GRCm38) splice site probably null
R5186:Prpf8 UTSW 11 75,489,783 (GRCm38) missense possibly damaging 0.93
R5215:Prpf8 UTSW 11 75,500,204 (GRCm38) missense probably benign 0.02
R5288:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5362:Prpf8 UTSW 11 75,506,410 (GRCm38) missense possibly damaging 0.53
R5384:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5386:Prpf8 UTSW 11 75,495,799 (GRCm38) missense probably damaging 1.00
R5423:Prpf8 UTSW 11 75,508,958 (GRCm38) missense probably damaging 1.00
R5472:Prpf8 UTSW 11 75,503,643 (GRCm38) missense possibly damaging 0.89
R5539:Prpf8 UTSW 11 75,503,638 (GRCm38) missense probably benign 0.20
R5620:Prpf8 UTSW 11 75,505,101 (GRCm38) missense possibly damaging 0.95
R5669:Prpf8 UTSW 11 75,504,738 (GRCm38) missense probably damaging 1.00
R5887:Prpf8 UTSW 11 75,500,908 (GRCm38) missense possibly damaging 0.87
R5948:Prpf8 UTSW 11 75,509,189 (GRCm38) missense possibly damaging 0.95
R6073:Prpf8 UTSW 11 75,494,022 (GRCm38) critical splice donor site probably null
R6250:Prpf8 UTSW 11 75,493,508 (GRCm38) missense possibly damaging 0.95
R6358:Prpf8 UTSW 11 75,491,495 (GRCm38) missense probably benign 0.33
R6629:Prpf8 UTSW 11 75,495,426 (GRCm38) splice site probably null
R6804:Prpf8 UTSW 11 75,499,809 (GRCm38) missense possibly damaging 0.71
R6922:Prpf8 UTSW 11 75,490,736 (GRCm38) missense probably damaging 1.00
R7035:Prpf8 UTSW 11 75,504,828 (GRCm38) missense possibly damaging 0.72
R7038:Prpf8 UTSW 11 75,496,158 (GRCm38) missense probably benign 0.02
R7089:Prpf8 UTSW 11 75,508,548 (GRCm38) missense probably damaging 0.99
R7101:Prpf8 UTSW 11 75,490,400 (GRCm38) missense possibly damaging 0.85
R7114:Prpf8 UTSW 11 75,503,355 (GRCm38) nonsense probably null
R7182:Prpf8 UTSW 11 75,490,727 (GRCm38) missense possibly damaging 0.96
R7290:Prpf8 UTSW 11 75,493,957 (GRCm38) missense possibly damaging 0.85
R7323:Prpf8 UTSW 11 75,491,784 (GRCm38) missense probably benign 0.32
R7485:Prpf8 UTSW 11 75,508,912 (GRCm38) nonsense probably null
R7522:Prpf8 UTSW 11 75,509,276 (GRCm38) missense possibly damaging 0.82
R7546:Prpf8 UTSW 11 75,508,374 (GRCm38) missense probably damaging 1.00
R7596:Prpf8 UTSW 11 75,491,504 (GRCm38) missense probably benign 0.03
R7699:Prpf8 UTSW 11 75,500,196 (GRCm38) missense probably benign 0.02
R7731:Prpf8 UTSW 11 75,508,906 (GRCm38) missense probably damaging 0.97
R7821:Prpf8 UTSW 11 75,494,474 (GRCm38) missense probably benign 0.01
R7932:Prpf8 UTSW 11 75,492,597 (GRCm38) missense possibly damaging 0.92
R8039:Prpf8 UTSW 11 75,502,542 (GRCm38) missense possibly damaging 0.95
R8067:Prpf8 UTSW 11 75,500,150 (GRCm38) missense probably damaging 0.98
R8316:Prpf8 UTSW 11 75,499,815 (GRCm38) missense possibly damaging 0.71
R8560:Prpf8 UTSW 11 75,491,774 (GRCm38) nonsense probably null
R8823:Prpf8 UTSW 11 75,493,456 (GRCm38) missense probably benign 0.05
R8977:Prpf8 UTSW 11 75,496,044 (GRCm38) missense probably benign 0.12
R9116:Prpf8 UTSW 11 75,489,763 (GRCm38) missense possibly damaging 0.71
R9166:Prpf8 UTSW 11 75,496,514 (GRCm38) missense possibly damaging 0.53
R9360:Prpf8 UTSW 11 75,490,330 (GRCm38) missense possibly damaging 0.95
R9453:Prpf8 UTSW 11 75,506,386 (GRCm38) missense possibly damaging 0.56
R9518:Prpf8 UTSW 11 75,503,660 (GRCm38) missense possibly damaging 0.72
R9532:Prpf8 UTSW 11 75,494,782 (GRCm38) missense probably benign 0.01
R9626:Prpf8 UTSW 11 75,494,855 (GRCm38) missense possibly damaging 0.53
R9760:Prpf8 UTSW 11 75,503,431 (GRCm38) missense probably benign 0.20
X0028:Prpf8 UTSW 11 75,506,764 (GRCm38) missense probably damaging 0.99
Z1177:Prpf8 UTSW 11 75,503,334 (GRCm38) missense probably benign 0.35
Predicted Primers PCR Primer
(F):5'- TGTGATACATGGCTTCCTCCTCCAG -3'
(R):5'- AGTGATAATCTCGTCACCGTGCTTG -3'

Sequencing Primer
(F):5'- catctgtaacgagatctgactcc -3'
(R):5'- CAGTTCGAGTCTGTGTAGCA -3'
Posted On 2013-05-09