Incidental Mutation 'R5098:Or2t6'
| ID |
388149 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or2t6
|
| Ensembl Gene |
ENSMUSG00000052417 |
| Gene Name |
olfactory receptor family 2 subfamily T member 6 |
| Synonyms |
Olfr720, MOR274-2, GA_x6K02T2PLTE-6544896-6543946 |
| MMRRC Submission |
042687-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.286)
|
| Stock # |
R5098 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
14 |
| Chromosomal Location |
8293683-8294633 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 14175683 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Alanine
at position 133
(V133A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000149641
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035250]
[ENSMUST00000206298]
[ENSMUST00000216079]
[ENSMUST00000217642]
|
| AlphaFold |
Q8VF37 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000035250
AA Change: V133A
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000046509
Gene: ENSMUSG00000052417
AA Change: V133A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
30 |
307 |
8.4e-49 |
PFAM |
|
Pfam:7tm_1
|
40 |
289 |
8.9e-25 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000206298
AA Change: V133A
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000216079
AA Change: V133A
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000217642
AA Change: V133A
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
| Meta Mutation Damage Score |
0.1700 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 96.8%
- 20x: 94.0%
|
| Validation Efficiency |
100% (54/54) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca8b |
T |
C |
11: 109,847,944 (GRCm39) |
I784V |
probably benign |
Het |
| Agxt |
A |
G |
1: 93,065,029 (GRCm39) |
H146R |
probably benign |
Het |
| Art5 |
A |
G |
7: 101,747,177 (GRCm39) |
F201L |
probably damaging |
Het |
| Bcl2a1b |
T |
A |
9: 89,081,432 (GRCm39) |
M7K |
probably benign |
Het |
| Card10 |
G |
A |
15: 78,660,917 (GRCm39) |
A1030V |
probably benign |
Het |
| Ccdc66 |
G |
A |
14: 27,220,750 (GRCm39) |
T58M |
probably damaging |
Het |
| Cd72 |
C |
T |
4: 43,452,610 (GRCm39) |
G74R |
probably damaging |
Het |
| Cdc27 |
T |
C |
11: 104,398,113 (GRCm39) |
K749R |
probably damaging |
Het |
| Commd3 |
A |
T |
2: 18,678,988 (GRCm39) |
T102S |
possibly damaging |
Het |
| Cyp2f2 |
A |
G |
7: 26,829,304 (GRCm39) |
T270A |
possibly damaging |
Het |
| Dclre1b |
A |
G |
3: 103,716,452 (GRCm39) |
|
probably benign |
Het |
| Dennd1b |
T |
A |
1: 139,061,459 (GRCm39) |
D380E |
probably damaging |
Het |
| Dhx58 |
T |
C |
11: 100,585,999 (GRCm39) |
E674G |
probably benign |
Het |
| Dnaaf9 |
A |
G |
2: 130,640,101 (GRCm39) |
S128P |
probably damaging |
Het |
| Ecpas |
T |
C |
4: 58,877,048 (GRCm39) |
D129G |
probably damaging |
Het |
| Exoc5 |
T |
C |
14: 49,286,304 (GRCm39) |
T108A |
possibly damaging |
Het |
| Fat4 |
T |
C |
3: 38,942,438 (GRCm39) |
S444P |
probably benign |
Het |
| Gm3327 |
A |
T |
14: 44,362,292 (GRCm39) |
I64F |
unknown |
Het |
| Gm4787 |
G |
C |
12: 81,424,604 (GRCm39) |
T518S |
probably benign |
Het |
| Gpr15 |
T |
A |
16: 58,538,890 (GRCm39) |
R66S |
probably damaging |
Het |
| Hmga1b |
T |
C |
11: 120,654,018 (GRCm39) |
S102P |
probably benign |
Het |
| Kat6b |
G |
A |
14: 21,669,083 (GRCm39) |
|
probably benign |
Het |
| Kdm1b |
A |
G |
13: 47,216,467 (GRCm39) |
Y279C |
probably damaging |
Het |
| Krtap9-3 |
C |
A |
11: 99,488,816 (GRCm39) |
C22F |
probably benign |
Het |
| Map3k14 |
T |
A |
11: 103,115,185 (GRCm39) |
D817V |
probably damaging |
Het |
| Mybpc1 |
T |
C |
10: 88,381,926 (GRCm39) |
D588G |
probably damaging |
Het |
| Or1e16 |
AGCGGTCGTAGGC |
AGC |
11: 73,286,480 (GRCm39) |
|
probably null |
Het |
| Or5g29 |
A |
G |
2: 85,420,976 (GRCm39) |
I31V |
probably benign |
Het |
| Pcdhb20 |
A |
G |
18: 37,637,858 (GRCm39) |
D128G |
probably damaging |
Het |
| Pgap6 |
A |
T |
17: 26,337,902 (GRCm39) |
N429Y |
probably damaging |
Het |
| Ppil6 |
A |
G |
10: 41,366,616 (GRCm39) |
E47G |
probably null |
Het |
| Rad17 |
A |
T |
13: 100,754,154 (GRCm39) |
*689K |
probably null |
Het |
| Scin |
A |
T |
12: 40,127,541 (GRCm39) |
Y416* |
probably null |
Het |
| Serf1 |
A |
G |
13: 100,245,575 (GRCm39) |
T18A |
probably benign |
Het |
| Sik2 |
T |
C |
9: 50,906,891 (GRCm39) |
|
probably benign |
Het |
| Slc39a8 |
C |
A |
3: 135,563,918 (GRCm39) |
N254K |
probably benign |
Het |
| Spint3 |
A |
G |
2: 164,411,821 (GRCm39) |
F63L |
probably damaging |
Het |
| Suox |
A |
T |
10: 128,507,027 (GRCm39) |
S334T |
probably damaging |
Het |
| Tas2r119 |
A |
G |
15: 32,178,228 (GRCm39) |
M265V |
probably benign |
Het |
| Tmem126b |
A |
G |
7: 90,118,850 (GRCm39) |
L146P |
probably damaging |
Het |
| Trpc3 |
G |
T |
3: 36,717,047 (GRCm39) |
D330E |
probably benign |
Het |
| Ugt2a2 |
T |
C |
5: 87,612,040 (GRCm39) |
E290G |
possibly damaging |
Het |
| Ugt2b37 |
T |
A |
5: 87,390,812 (GRCm39) |
T352S |
probably damaging |
Het |
| Vmn1r40 |
T |
C |
6: 89,691,930 (GRCm39) |
V249A |
probably damaging |
Het |
| Zc3h18 |
A |
G |
8: 123,113,608 (GRCm39) |
D200G |
probably damaging |
Het |
| Zfp652 |
T |
C |
11: 95,643,762 (GRCm39) |
V140A |
probably damaging |
Het |
|
| Other mutations in Or2t6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02658:Or2t6
|
APN |
14 |
14,175,732 (GRCm38) |
missense |
possibly damaging |
0.92 |
|
IGL02704:Or2t6
|
APN |
14 |
14,175,483 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL03308:Or2t6
|
APN |
14 |
14,175,161 (GRCm38) |
missense |
probably benign |
|
|
IGL03331:Or2t6
|
APN |
14 |
14,176,017 (GRCm38) |
missense |
probably benign |
0.16 |
|
R0008:Or2t6
|
UTSW |
14 |
14,176,092 (GRCm38) |
start gained |
probably benign |
|
|
R0131:Or2t6
|
UTSW |
14 |
14,175,620 (GRCm38) |
missense |
probably benign |
0.03 |
|
R0647:Or2t6
|
UTSW |
14 |
14,175,858 (GRCm38) |
missense |
probably benign |
0.35 |
|
R0747:Or2t6
|
UTSW |
14 |
14,175,429 (GRCm38) |
missense |
probably benign |
0.01 |
|
R1210:Or2t6
|
UTSW |
14 |
14,176,029 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1225:Or2t6
|
UTSW |
14 |
14,175,600 (GRCm38) |
missense |
possibly damaging |
0.89 |
|
R1525:Or2t6
|
UTSW |
14 |
14,175,725 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1975:Or2t6
|
UTSW |
14 |
14,175,446 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1994:Or2t6
|
UTSW |
14 |
14,175,854 (GRCm38) |
missense |
probably benign |
0.16 |
|
R2310:Or2t6
|
UTSW |
14 |
14,175,836 (GRCm38) |
missense |
probably benign |
0.03 |
|
R3151:Or2t6
|
UTSW |
14 |
14,175,203 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4547:Or2t6
|
UTSW |
14 |
14,175,854 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R4824:Or2t6
|
UTSW |
14 |
14,175,885 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5063:Or2t6
|
UTSW |
14 |
14,175,593 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5430:Or2t6
|
UTSW |
14 |
14,175,692 (GRCm38) |
missense |
probably benign |
0.03 |
|
R5512:Or2t6
|
UTSW |
14 |
14,175,633 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5748:Or2t6
|
UTSW |
14 |
14,175,314 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7200:Or2t6
|
UTSW |
14 |
14,175,477 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7407:Or2t6
|
UTSW |
14 |
14,175,402 (GRCm38) |
missense |
probably benign |
|
|
R7666:Or2t6
|
UTSW |
14 |
14,176,075 (GRCm38) |
missense |
probably benign |
|
|
R7760:Or2t6
|
UTSW |
14 |
14,175,905 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8118:Or2t6
|
UTSW |
14 |
14,175,863 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8413:Or2t6
|
UTSW |
14 |
14,175,416 (GRCm38) |
missense |
probably benign |
0.00 |
|
R8873:Or2t6
|
UTSW |
14 |
14,175,344 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGGCTTTGTCACCACAGGC -3'
(R):5'- ATGTGCCACGTTCTTCATGG -3'
Sequencing Primer
(F):5'- AGGCCAGCCTCAGCATTG -3'
(R):5'- CCATATTGGCAAATGGGGTTATGATC -3'
|
| Posted On |
2016-06-06 |
Incidental Mutation