Incidental Mutation 'R5916:Ntrk2'
| ID |
461353 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ntrk2
|
| Ensembl Gene |
ENSMUSG00000055254 |
| Gene Name |
neurotrophic tyrosine kinase, receptor, type 2 |
| Synonyms |
C030027L06Rik, Tkrb, trkB |
| MMRRC Submission |
044113-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.903)
|
| Stock # |
R5916 (G1)
|
| Quality Score |
114 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
58806569-59133970 bp(+) (GRCm38) |
| Type of Mutation |
start codon destroyed |
| DNA Base Change (assembly) |
A to G
at 58808729 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Methionine to Valine
at position 1
(M1V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000153337
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000079828]
[ENSMUST00000109838]
[ENSMUST00000224259]
[ENSMUST00000224402]
[ENSMUST00000225488]
[ENSMUST00000225583]
[ENSMUST00000225950]
|
| AlphaFold |
P15209 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000079828
AA Change: M1V
PolyPhen 2
Score 0.879 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000078757
Gene: ENSMUSG00000055254
AA Change: M1V
| Domain | Start | End | E-Value | Type |
|---|
|
LRRNT
|
31 |
65 |
1.74e-4 |
SMART |
|
LRRCT
|
148 |
195 |
8.56e-10 |
SMART |
|
IGc2
|
209 |
273 |
4.43e-5 |
SMART |
|
Pfam:I-set
|
298 |
377 |
1.2e-8 |
PFAM |
|
transmembrane domain
|
431 |
453 |
N/A |
INTRINSIC |
|
TyrKc
|
537 |
806 |
2.48e-142 |
SMART |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000109838
AA Change: M1V
PolyPhen 2
Score 0.879 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000105464
Gene: ENSMUSG00000055254
AA Change: M1V
| Domain | Start | End | E-Value | Type |
|---|
|
LRRNT
|
31 |
65 |
1.74e-4 |
SMART |
|
LRRCT
|
148 |
195 |
8.56e-10 |
SMART |
|
IGc2
|
209 |
273 |
4.43e-5 |
SMART |
|
Pfam:I-set
|
298 |
377 |
1.1e-8 |
PFAM |
|
Pfam:Ig_2
|
300 |
377 |
5.4e-4 |
PFAM |
|
transmembrane domain
|
431 |
453 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000224259
AA Change: M1V
PolyPhen 2
Score 0.879 (Sensitivity: 0.82; Specificity: 0.94)
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000224402
AA Change: M1V
PolyPhen 2
Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000225119
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000225162
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000225488
AA Change: M1V
PolyPhen 2
Score 0.879 (Sensitivity: 0.82; Specificity: 0.94)
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000225583
AA Change: M1V
PolyPhen 2
Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000225950
AA Change: M1V
PolyPhen 2
Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)
|
| Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.3%
- 10x: 97.2%
- 20x: 92.4%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the neurotrophic tyrosine receptor kinase (NTRK) family. This kinase is a membrane-bound receptor that, upon neurotrophin binding, phosphorylates itself and members of the MAPK pathway. Signalling through this kinase leads to cell differentiation. Mutations in this gene have been associated with obesity and mood disorders. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014]
PHENOTYPE: Different lines of homozygous mice show varied abnormalities including innervation and neural defects, rod defects, impaired ovarian folliculogenesis, and reduced postnatal survival. Homozygotes for a point mutation are normal, but are subject to pharmacological control of signalling. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 61 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2810474O19Rik |
C |
T |
6: 149,326,578 |
T374I |
probably damaging |
Het |
| 4930563D23Rik |
T |
A |
16: 92,320,671 |
E243V |
probably damaging |
Het |
| Aadacl4 |
A |
T |
4: 144,622,980 |
N269I |
possibly damaging |
Het |
| Abcc1 |
G |
T |
16: 14,465,142 |
V1161F |
possibly damaging |
Het |
| Adam3 |
A |
T |
8: 24,684,539 |
|
probably null |
Het |
| Agt |
A |
T |
8: 124,563,858 |
S237T |
possibly damaging |
Het |
| Ano3 |
A |
T |
2: 110,681,836 |
F674L |
probably benign |
Het |
| Asb2 |
G |
T |
12: 103,323,876 |
A504E |
probably damaging |
Het |
| Atp13a1 |
T |
A |
8: 69,807,098 |
I1113N |
probably damaging |
Het |
| Atxn7l2 |
T |
C |
3: 108,205,662 |
|
probably null |
Het |
| Bambi |
A |
G |
18: 3,511,463 |
T95A |
probably benign |
Het |
| Ccdc173 |
A |
T |
2: 69,789,462 |
M1K |
probably null |
Het |
| Clrn1 |
T |
C |
3: 58,846,362 |
T193A |
probably benign |
Het |
| Colgalt2 |
T |
A |
1: 152,504,122 |
D437E |
probably damaging |
Het |
| Dchs1 |
C |
A |
7: 105,759,166 |
A1820S |
probably damaging |
Het |
| Dnah12 |
T |
A |
14: 26,706,918 |
I233N |
possibly damaging |
Het |
| Dsc3 |
T |
C |
18: 19,987,020 |
N194D |
probably damaging |
Het |
| Dync2h1 |
A |
G |
9: 7,102,309 |
|
probably null |
Het |
| Erich3 |
A |
T |
3: 154,695,823 |
R36S |
probably damaging |
Het |
| Fmnl3 |
A |
T |
15: 99,321,828 |
C680S |
probably damaging |
Het |
| Focad |
T |
C |
4: 88,357,541 |
L1129P |
unknown |
Het |
| Fzd3 |
G |
A |
14: 65,202,729 |
T664I |
probably benign |
Het |
| Glb1l3 |
T |
C |
9: 26,854,736 |
I129V |
probably benign |
Het |
| Heatr1 |
T |
C |
13: 12,434,471 |
F1950S |
probably damaging |
Het |
| Herc6 |
G |
A |
6: 57,646,203 |
G597E |
probably benign |
Het |
| Hmcn2 |
T |
A |
2: 31,396,139 |
V2101D |
probably damaging |
Het |
| Il17re |
T |
A |
6: 113,470,123 |
C612S |
probably damaging |
Het |
| Il1f9 |
T |
G |
2: 24,192,794 |
*194E |
probably null |
Het |
| Junb |
T |
C |
8: 84,977,876 |
Y185C |
probably benign |
Het |
| Lrriq1 |
G |
A |
10: 103,221,382 |
Q186* |
probably null |
Het |
| Lrrn2 |
T |
A |
1: 132,937,800 |
V201E |
probably damaging |
Het |
| Ly6l |
A |
T |
15: 75,451,178 |
T68S |
probably benign |
Het |
| March1 |
G |
T |
8: 66,387,111 |
R182L |
possibly damaging |
Het |
| Megf6 |
A |
G |
4: 154,249,425 |
|
probably null |
Het |
| Mga |
T |
A |
2: 119,964,312 |
S2708T |
probably benign |
Het |
| Mx1 |
T |
C |
16: 97,451,733 |
T396A |
probably benign |
Het |
| Naip5 |
A |
C |
13: 100,222,701 |
S676A |
probably benign |
Het |
| Npepl1 |
G |
T |
2: 174,121,544 |
W456C |
probably benign |
Het |
| Nufip1 |
T |
C |
14: 76,134,900 |
*485Q |
probably null |
Het |
| Ocln |
T |
G |
13: 100,506,179 |
D216A |
possibly damaging |
Het |
| Olfr108 |
C |
T |
17: 37,445,679 |
L53F |
probably benign |
Het |
| Olfr1308 |
A |
G |
2: 111,960,830 |
M81T |
probably damaging |
Het |
| Olfr417 |
A |
T |
1: 174,369,132 |
T72S |
probably damaging |
Het |
| Olfr544 |
G |
A |
7: 102,484,379 |
S247F |
probably damaging |
Het |
| Papd4 |
T |
C |
13: 93,175,547 |
D215G |
probably damaging |
Het |
| Ptprq |
A |
T |
10: 107,523,513 |
M2243K |
probably damaging |
Het |
| Rad51b |
C |
T |
12: 79,325,082 |
Q190* |
probably null |
Het |
| Rfx8 |
T |
C |
1: 39,688,619 |
Y182C |
probably benign |
Het |
| Rpgrip1l |
C |
A |
8: 91,252,913 |
R967L |
possibly damaging |
Het |
| Scube2 |
A |
G |
7: 109,831,724 |
Y423H |
possibly damaging |
Het |
| Sipa1l2 |
A |
T |
8: 125,468,573 |
Y809N |
probably damaging |
Het |
| Slc35f1 |
C |
A |
10: 52,933,221 |
Y101* |
probably null |
Het |
| Tbc1d22a |
A |
G |
15: 86,214,608 |
K12E |
possibly damaging |
Het |
| Tmcc2 |
C |
T |
1: 132,357,691 |
V646M |
probably damaging |
Het |
| Tpp1 |
A |
T |
7: 105,749,380 |
M243K |
probably damaging |
Het |
| Trappc12 |
A |
G |
12: 28,691,514 |
L732P |
probably damaging |
Het |
| U2af2 |
A |
T |
7: 5,079,180 |
|
probably null |
Het |
| Utrn |
T |
A |
10: 12,665,051 |
N1877Y |
probably damaging |
Het |
| Vsir |
C |
T |
10: 60,358,037 |
T93I |
probably damaging |
Het |
| Zkscan5 |
T |
A |
5: 145,205,302 |
M3K |
possibly damaging |
Het |
| Zscan29 |
G |
T |
2: 121,164,037 |
T489N |
probably damaging |
Het |
|
| Other mutations in Ntrk2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01928:Ntrk2
|
APN |
13 |
58,846,851 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02331:Ntrk2
|
APN |
13 |
58,846,856 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL02465:Ntrk2
|
APN |
13 |
59,060,380 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Brainy
|
UTSW |
13 |
59,126,568 (GRCm38) |
missense |
probably damaging |
1.00 |
|
PIT4366001:Ntrk2
|
UTSW |
13 |
59,060,335 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0102:Ntrk2
|
UTSW |
13 |
58,808,793 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0547:Ntrk2
|
UTSW |
13 |
58,874,370 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0615:Ntrk2
|
UTSW |
13 |
59,128,186 (GRCm38) |
nonsense |
probably null |
|
|
R0620:Ntrk2
|
UTSW |
13 |
58,846,821 (GRCm38) |
missense |
probably benign |
|
|
R1770:Ntrk2
|
UTSW |
13 |
58,861,318 (GRCm38) |
missense |
possibly damaging |
0.67 |
|
R2063:Ntrk2
|
UTSW |
13 |
58,859,297 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2089:Ntrk2
|
UTSW |
13 |
58,859,301 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2091:Ntrk2
|
UTSW |
13 |
58,859,301 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2091:Ntrk2
|
UTSW |
13 |
58,859,301 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2178:Ntrk2
|
UTSW |
13 |
58,808,802 (GRCm38) |
missense |
probably benign |
0.06 |
|
R2275:Ntrk2
|
UTSW |
13 |
58,861,351 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R2370:Ntrk2
|
UTSW |
13 |
59,054,434 (GRCm38) |
missense |
probably benign |
0.28 |
|
R2413:Ntrk2
|
UTSW |
13 |
58,874,412 (GRCm38) |
missense |
possibly damaging |
0.56 |
|
R2520:Ntrk2
|
UTSW |
13 |
59,054,276 (GRCm38) |
splice site |
probably null |
|
|
R2926:Ntrk2
|
UTSW |
13 |
59,060,284 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4163:Ntrk2
|
UTSW |
13 |
58,860,240 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4320:Ntrk2
|
UTSW |
13 |
58,860,146 (GRCm38) |
missense |
possibly damaging |
0.48 |
|
R4348:Ntrk2
|
UTSW |
13 |
58,878,259 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4440:Ntrk2
|
UTSW |
13 |
59,060,312 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4534:Ntrk2
|
UTSW |
13 |
59,126,529 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4695:Ntrk2
|
UTSW |
13 |
59,126,493 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R5356:Ntrk2
|
UTSW |
13 |
59,060,242 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5471:Ntrk2
|
UTSW |
13 |
58,871,760 (GRCm38) |
missense |
probably benign |
0.01 |
|
R5750:Ntrk2
|
UTSW |
13 |
58,808,922 (GRCm38) |
missense |
probably benign |
0.02 |
|
R5972:Ntrk2
|
UTSW |
13 |
58,837,819 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6015:Ntrk2
|
UTSW |
13 |
59,060,395 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6298:Ntrk2
|
UTSW |
13 |
58,871,756 (GRCm38) |
nonsense |
probably null |
|
|
R6419:Ntrk2
|
UTSW |
13 |
58,861,299 (GRCm38) |
nonsense |
probably null |
|
|
R6488:Ntrk2
|
UTSW |
13 |
58,861,356 (GRCm38) |
missense |
possibly damaging |
0.93 |
|
R6611:Ntrk2
|
UTSW |
13 |
59,054,414 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6827:Ntrk2
|
UTSW |
13 |
59,126,568 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6911:Ntrk2
|
UTSW |
13 |
58,859,215 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7387:Ntrk2
|
UTSW |
13 |
58,985,979 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7445:Ntrk2
|
UTSW |
13 |
58,846,762 (GRCm38) |
missense |
probably benign |
0.03 |
|
R7561:Ntrk2
|
UTSW |
13 |
58,861,388 (GRCm38) |
missense |
probably benign |
0.31 |
|
R8031:Ntrk2
|
UTSW |
13 |
58,874,379 (GRCm38) |
missense |
probably benign |
|
|
R8044:Ntrk2
|
UTSW |
13 |
59,126,499 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8422:Ntrk2
|
UTSW |
13 |
58,985,901 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8941:Ntrk2
|
UTSW |
13 |
59,060,295 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8990:Ntrk2
|
UTSW |
13 |
58,860,174 (GRCm38) |
nonsense |
probably null |
|
|
R9129:Ntrk2
|
UTSW |
13 |
59,128,270 (GRCm38) |
missense |
probably benign |
0.01 |
|
Z1176:Ntrk2
|
UTSW |
13 |
58,874,333 (GRCm38) |
missense |
probably benign |
|
|
Z1177:Ntrk2
|
UTSW |
13 |
58,859,273 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGTCCCAGCCACTGTGAAC -3'
(R):5'- GGTCAACGCTGTTAGGTTCC -3'
Sequencing Primer
(F):5'- AGCCACTGTGAACCATTTGG -3'
(R):5'- TTCCAACCTCGGGAATGC -3'
|
| Posted On |
2017-02-28 |
Incidental Mutation