Mutagenetix > Incidental Mutation

Incidental Mutation 'R7287:Tcf25'

566102

Institutional Source

Beutler Lab

Gene Symbol

Tcf25

Ensembl Gene

ENSMUSG00000001472

Gene Name

transcription factor 25 (basic helix-loop-helix)

Synonyms

Nulp1, 1810041K11Rik, D8Ertd325e, 1100001J13Rik

MMRRC Submission

045321-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7287 (G1)

Quality Score

217.009

Status

Validated

Chromosome

Chromosomal Location

124100492-124130574 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 124100711 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 34 (A34T)

Ref Sequence

ENSEMBL: ENSMUSP00000056485 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000010298] [ENSMUST00000057934] [ENSMUST00000108840] [ENSMUST00000127664] [ENSMUST00000211932] [ENSMUST00000212404] [ENSMUST00000212470] [ENSMUST00000212569] [ENSMUST00000212571]

AlphaFold

Q8R3L2

Predicted Effect

probably benign
Transcript: ENSMUST00000010298

SMART Domains

Protein: ENSMUSP00000010298
Gene: ENSMUSG00000010154

Domain	Start	End	E-Value	Type
low complexity region	2	23	N/A	INTRINSIC
KIND	26	207	2.63e-82	SMART
PDB:4EFH\|B	310	360	8e-8	PDB
low complexity region	419	431	N/A	INTRINSIC
low complexity region	496	513	N/A	INTRINSIC
SCOP:d1zbdb_	540	636	7e-8	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000057934
AA Change: A34T

PolyPhen 2 Score 0.740 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000056485
Gene: ENSMUSG00000001472
AA Change: A34T

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
low complexity region	34	55	N/A	INTRINSIC
low complexity region	124	136	N/A	INTRINSIC
Pfam:Tcf25	248	588	4.6e-120	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108840
AA Change: A34T

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000104468
Gene: ENSMUSG00000001472
AA Change: A34T

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
low complexity region	34	55	N/A	INTRINSIC
low complexity region	124	136	N/A	INTRINSIC
Pfam:Tcf25	247	588	2.3e-113	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000127664

SMART Domains

Protein: ENSMUSP00000118564
Gene: ENSMUSG00000092329

Domain	Start	End	E-Value	Type
Pfam:Glycos_transf_2	104	287	7.4e-31	PFAM
Pfam:Glyco_transf_7C	261	331	4.9e-8	PFAM
RICIN	406	531	9.28e-27	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000211932
AA Change: A34T

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

probably benign
Transcript: ENSMUST00000212404

Predicted Effect

possibly damaging
Transcript: ENSMUST00000212470
AA Change: A34T

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000212569
AA Change: A34T

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000212571
AA Change: A34T

PolyPhen 2 Score 0.831 (Sensitivity: 0.84; Specificity: 0.93)

Meta Mutation Damage Score

0.0696

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

100% (71/71)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] TCF25 is a member of the basic helix-loop-helix (bHLH) family of transcription factors that are important in embryonic development (Steen and Lindholm, 2008 [PubMed 18068114]).[supplied by OMIM, Sep 2008]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca3	A	G	17: 24,604,861 (GRCm39)	D656G	possibly damaging	Het
Abcc3	C	T	11: 94,247,873 (GRCm39)	A1207T	probably benign	Het
Abcc8	T	C	7: 45,762,534 (GRCm39)	H1209R	probably damaging	Het
Adam26a	T	C	8: 44,023,380 (GRCm39)	T37A	possibly damaging	Het
Adamts9	C	T	6: 92,866,984 (GRCm39)	R685Q	possibly damaging	Het
Anapc7	T	A	5: 122,571,499 (GRCm39)	N191K	probably benign	Het
Ankrd26	C	T	6: 118,526,598 (GRCm39)		probably null	Het
Ap5z1	T	C	5: 142,459,802 (GRCm39)	L484P	probably damaging	Het
Arhgap32	A	G	9: 32,063,993 (GRCm39)	D77G		Het
Atp10a	T	A	7: 58,477,017 (GRCm39)	D1213E	probably damaging	Het
B3gnt8	T	C	7: 25,328,395 (GRCm39)	L275P	probably damaging	Het
Bltp2	G	A	11: 78,163,709 (GRCm39)	R1059H	possibly damaging	Het
Cab39	A	G	1: 85,746,182 (GRCm39)	E21G	probably benign	Het
Capn15	G	T	17: 26,179,429 (GRCm39)	S948R	probably damaging	Het
Cbarp	T	C	10: 79,973,154 (GRCm39)	T15A	unknown	Het
Ccdc81	C	T	7: 89,542,331 (GRCm39)	A182T	probably damaging	Het
Ccpg1	A	G	9: 72,922,688 (GRCm39)	H766R	probably benign	Het
Cfl1	T	C	19: 5,542,562 (GRCm39)	V14A	probably benign	Het
Chd6	A	G	2: 160,850,312 (GRCm39)	I875T	probably benign	Het
Cidec	T	A	6: 113,405,359 (GRCm39)	E121D	probably benign	Het
Clpx	C	A	9: 65,207,295 (GRCm39)	Y64*	probably null	Het
Cntn1	T	A	15: 92,143,833 (GRCm39)		probably null	Het
Cyp24a1	A	G	2: 170,327,826 (GRCm39)	L472P	probably damaging	Het
Dcdc2c	G	T	12: 28,566,685 (GRCm39)	D159E	probably benign	Het
Emp1	T	C	6: 135,357,167 (GRCm39)	F82L	probably benign	Het
Fem1b	T	C	9: 62,703,404 (GRCm39)	T619A	probably benign	Het
Fgf15	A	T	7: 144,450,531 (GRCm39)	D39V	probably benign	Het
Galnt12	T	G	4: 47,108,525 (GRCm39)	F221V	probably damaging	Het
Herc6	A	G	6: 57,628,965 (GRCm39)		probably null	Het
Hspg2	G	A	4: 137,256,867 (GRCm39)	V1537I	probably benign	Het
Ido2	T	C	8: 25,025,154 (GRCm39)		probably null	Het
Insr	G	A	8: 3,219,717 (GRCm39)	T935I	probably benign	Het
Itgax	G	A	7: 127,747,677 (GRCm39)	C1031Y	probably damaging	Het
Kif13a	C	T	13: 46,905,931 (GRCm39)	V671M	possibly damaging	Het
Kmt5b	T	C	19: 3,854,501 (GRCm39)	Y255H	possibly damaging	Het
Lrriq1	A	T	10: 103,051,877 (GRCm39)	Y292N	probably benign	Het
Mrpl37	A	G	4: 106,917,717 (GRCm39)	F318S	probably damaging	Het
Nav2	A	G	7: 49,070,076 (GRCm39)	N311D	probably benign	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Nlrp9b	T	C	7: 19,762,381 (GRCm39)	C673R	probably damaging	Het
Npnt	A	G	3: 132,612,563 (GRCm39)	V74A	probably benign	Het
Or10ak12	T	A	4: 118,666,939 (GRCm39)	T41S	probably benign	Het
Or1e19	T	A	11: 73,316,669 (GRCm39)	I47F	probably benign	Het
Plce1	A	T	19: 38,690,347 (GRCm39)	Q677L	probably benign	Het
Pmel	C	T	10: 128,551,095 (GRCm39)	Q113*	probably null	Het
Pom121l2	T	A	13: 22,168,502 (GRCm39)	F924L	probably benign	Het
Poteg	G	A	8: 27,943,372 (GRCm39)	R214K	probably null	Het
Pprc1	G	T	19: 46,059,793 (GRCm39)	S1480I	unknown	Het
Secisbp2l	A	G	2: 125,582,289 (GRCm39)	S1056P	probably benign	Het
Selenoo	T	C	15: 88,982,903 (GRCm39)	F477L	probably benign	Het
Senp2	A	G	16: 21,837,114 (GRCm39)	D121G	probably damaging	Het
Slc25a11	T	C	11: 70,536,181 (GRCm39)	D211G	probably benign	Het
Slc44a2	A	G	9: 21,253,752 (GRCm39)	D131G	probably benign	Het
Tm9sf3	A	G	19: 41,205,818 (GRCm39)	Y530H	probably damaging	Het
Tmco3	G	A	8: 13,369,605 (GRCm39)		probably null	Het
Tmem132d	G	T	5: 128,061,415 (GRCm39)	Q396K	probably damaging	Het
Tmem154	A	G	3: 84,597,870 (GRCm39)	T136A	possibly damaging	Het
Tnrc6b	A	G	15: 80,763,742 (GRCm39)	T415A	possibly damaging	Het
Tonsl	T	C	15: 76,517,925 (GRCm39)		probably null	Het
Ttyh1	T	C	7: 4,128,657 (GRCm39)	Y185H	probably benign	Het
Ufl1	T	A	4: 25,254,852 (GRCm39)	T535S	probably benign	Het
Vmn1r15	T	C	6: 57,235,201 (GRCm39)	L23P	possibly damaging	Het
Vmn2r25	T	A	6: 123,829,040 (GRCm39)	H78L	possibly damaging	Het
Vmn2r68	T	C	7: 84,871,460 (GRCm39)	T608A	probably benign	Het
Vwf	A	G	6: 125,614,430 (GRCm39)	I1104V		Het
Zbtb2	C	T	10: 4,318,986 (GRCm39)	D347N	possibly damaging	Het
Zfyve9	A	T	4: 108,575,453 (GRCm39)	S543T	probably benign	Het
Zhx1	T	C	15: 57,916,692 (GRCm39)	N518S	probably damaging	Het
Zmym6	T	C	4: 127,016,775 (GRCm39)	V852A	possibly damaging	Het

Other mutations in Tcf25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01790:Tcf25	APN	8	124,119,975 (GRCm39)	missense	possibly damaging	0.87
IGL02638:Tcf25	APN	8	124,126,031 (GRCm39)	missense	probably damaging	1.00
IGL03112:Tcf25	APN	8	124,109,258 (GRCm39)	splice site	probably benign
R0492:Tcf25	UTSW	8	124,108,203 (GRCm39)	missense	probably benign	0.00
R1081:Tcf25	UTSW	8	124,108,212 (GRCm39)	missense	probably benign	0.00
R1543:Tcf25	UTSW	8	124,115,326 (GRCm39)	missense	probably benign	0.01
R1634:Tcf25	UTSW	8	124,123,830 (GRCm39)	missense	possibly damaging	0.68
R1662:Tcf25	UTSW	8	124,108,289 (GRCm39)	missense	probably benign	0.00
R2253:Tcf25	UTSW	8	124,100,772 (GRCm39)	missense	probably benign	0.21
R4326:Tcf25	UTSW	8	124,127,882 (GRCm39)	nonsense	probably null
R4327:Tcf25	UTSW	8	124,127,882 (GRCm39)	nonsense	probably null
R4667:Tcf25	UTSW	8	124,123,764 (GRCm39)	missense	possibly damaging	0.89
R4977:Tcf25	UTSW	8	124,115,374 (GRCm39)	missense	probably benign	0.03
R5248:Tcf25	UTSW	8	124,100,678 (GRCm39)	missense	probably damaging	1.00
R5249:Tcf25	UTSW	8	124,115,372 (GRCm39)	missense	probably damaging	1.00
R5759:Tcf25	UTSW	8	124,108,196 (GRCm39)	missense	probably benign	0.00
R5806:Tcf25	UTSW	8	124,108,243 (GRCm39)	missense	probably benign	0.09
R5813:Tcf25	UTSW	8	124,122,354 (GRCm39)	splice site	probably null
R5905:Tcf25	UTSW	8	124,108,176 (GRCm39)	missense	possibly damaging	0.78
R6028:Tcf25	UTSW	8	124,108,176 (GRCm39)	missense	possibly damaging	0.78
R6114:Tcf25	UTSW	8	124,111,114 (GRCm39)	missense	probably damaging	1.00
R6349:Tcf25	UTSW	8	124,118,332 (GRCm39)	missense	probably damaging	1.00
R6904:Tcf25	UTSW	8	124,127,437 (GRCm39)	critical splice donor site	probably null
R7232:Tcf25	UTSW	8	124,127,800 (GRCm39)	splice site	probably null
R9062:Tcf25	UTSW	8	124,116,448 (GRCm39)	missense
R9135:Tcf25	UTSW	8	124,108,182 (GRCm39)	missense	probably benign	0.00
R9396:Tcf25	UTSW	8	124,127,831 (GRCm39)	missense	probably benign	0.00
RF007:Tcf25	UTSW	8	124,122,369 (GRCm39)	missense	probably benign	0.03
Z1176:Tcf25	UTSW	8	124,100,645 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TCTGAAAGCCAGCCATCTCC -3'
(R):5'- AGTCCAGACCCAACTTTGTGC -3'

Sequencing Primer
(F):5'- CGACACGCCAATCTTGCG -3'
(R):5'- TGCCCCTTCGCATGACG -3'

Posted On

2019-06-26