Mutagenetix > Incidental Mutation

Incidental Mutation 'R7916:Phf20'

648064

Institutional Source

Beutler Lab

Gene Symbol

Phf20

Ensembl Gene

ENSMUSG00000038116

Gene Name

PHD finger protein 20

Synonyms

6820402O20Rik

MMRRC Submission

045964-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.909) question?

Stock #

R7916 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

156038567-156151873 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 156129858 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 477 (K477E)

Ref Sequence

ENSEMBL: ENSMUSP00000043138 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037401]

AlphaFold

Q8BLG0

Predicted Effect

probably damaging
Transcript: ENSMUST00000037401
AA Change: K477E

PolyPhen 2 Score 0.957 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000043138
Gene: ENSMUSG00000038116
AA Change: K477E

Domain	Start	End	E-Value	Type
TUDOR	11	71	5.27e0	SMART
TUDOR	85	141	7.13e-4	SMART
AT_hook	257	269	1.65e0	SMART
low complexity region	323	332	N/A	INTRINSIC
ZnF_C2H2	455	480	1.86e0	SMART
low complexity region	486	493	N/A	INTRINSIC
low complexity region	526	555	N/A	INTRINSIC
low complexity region	612	630	N/A	INTRINSIC
PHD	657	701	2.83e-4	SMART
coiled coil region	945	966	N/A	INTRINSIC
low complexity region	974	987	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality, decreased body size and total body fat amount, and abnormal skeletal and hematopoietic development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	T	A	16: 4,682,454 (GRCm39)	L195*	probably null	Het
Ahnak	T	G	19: 8,983,196 (GRCm39)	D1493E	possibly damaging	Het
Alox12e	C	A	11: 70,212,111 (GRCm39)	R162L	probably benign	Het
Bax	T	G	7: 45,115,539 (GRCm39)	Q32P	probably benign	Het
Cand1	A	G	10: 119,052,493 (GRCm39)	M204T	probably benign	Het
Chd9	T	A	8: 91,761,684 (GRCm39)	Y2256*	probably null	Het
Chuk	A	G	19: 44,085,420 (GRCm39)	I242T	probably damaging	Het
Cic	T	C	7: 24,987,715 (GRCm39)	S1468P	probably damaging	Het
Col27a1	A	G	4: 63,142,789 (GRCm39)	H159R	probably damaging	Het
Cux1	T	C	5: 136,311,815 (GRCm39)	K1174E	probably damaging	Het
Dnah2	C	A	11: 69,311,974 (GRCm39)		probably null	Het
Dpp3	C	A	19: 4,967,052 (GRCm39)	E351*	probably null	Het
Dyrk1a	A	G	16: 94,474,200 (GRCm39)	Y319C	probably damaging	Het
E130308A19Rik	T	C	4: 59,719,841 (GRCm39)	S458P	probably damaging	Het
Ehmt1	G	A	2: 24,746,708 (GRCm39)	L425F	probably damaging	Het
Emp2	C	A	16: 10,102,437 (GRCm39)	R125L	possibly damaging	Het
Farsb	A	G	1: 78,435,200 (GRCm39)		probably null	Het
Frk	A	T	10: 34,360,021 (GRCm39)	R7S	possibly damaging	Het
Glb1l2	T	C	9: 26,678,720 (GRCm39)	T483A	probably benign	Het
Gm5773	T	C	3: 93,680,586 (GRCm39)	V86A	possibly damaging	Het
Gm7324	T	G	14: 43,952,003 (GRCm39)	D215E	probably benign	Het
Gng13	A	T	17: 25,937,932 (GRCm39)	K44*	probably null	Het
Gprin1	C	T	13: 54,887,263 (GRCm39)	G337D	possibly damaging	Het
Ighv1-84	G	T	12: 115,944,609 (GRCm39)	Q22K	probably benign	Het
Il20rb	T	C	9: 100,348,304 (GRCm39)	H210R	probably benign	Het
Iqcm	C	T	8: 76,304,578 (GRCm39)	S113L	probably benign	Het
Kat6b	AGAGGAGGAGGAGGAGGAGGA	AGAGGAGGAGGAGGAGGA	14: 21,712,417 (GRCm39)		probably benign	Het
Kmo	G	T	1: 175,487,236 (GRCm39)	G430W	probably damaging	Het
Kti12	A	C	4: 108,705,443 (GRCm39)	E119A	probably benign	Het
Kti12	G	T	4: 108,705,444 (GRCm39)	E119D	probably benign	Het
Ldhd	T	G	8: 112,356,023 (GRCm39)	D120A	possibly damaging	Het
Lyst	T	C	13: 13,821,657 (GRCm39)	S1344P	possibly damaging	Het
Mb	T	A	15: 76,900,257 (GRCm39)	I112F	probably damaging	Het
Mbd5	G	A	2: 49,147,118 (GRCm39)	V443M	probably damaging	Het
Milr1	A	G	11: 106,654,688 (GRCm39)	K180R	possibly damaging	Het
Mst1r	T	C	9: 107,784,777 (GRCm39)	F145S	probably damaging	Het
Mthfd2	A	T	6: 83,286,455 (GRCm39)	I251K	possibly damaging	Het
Nfx1	T	A	4: 40,977,142 (GRCm39)	M272K	probably benign	Het
Nlrp3	A	G	11: 59,442,689 (GRCm39)	D747G	probably benign	Het
Odr4	C	T	1: 150,260,249 (GRCm39)	R123K	probably benign	Het
Or2y1	A	T	11: 49,385,543 (GRCm39)	Y61F	probably benign	Het
Or5p60	C	A	7: 107,724,329 (GRCm39)	S47I	possibly damaging	Het
Or8k18	A	T	2: 86,085,202 (GRCm39)	Y278*	probably null	Het
Pcdha11	A	G	18: 37,140,441 (GRCm39)	E690G	probably benign	Het
Pcdhga4	T	A	18: 37,818,502 (GRCm39)	I17N	probably benign	Het
Peg10	T	TCCG	6: 4,756,451 (GRCm39)		probably benign	Het
Pik3c2b	T	A	1: 133,028,642 (GRCm39)	I1377N	probably benign	Het
Polr3h	T	C	15: 81,806,613 (GRCm39)	K69E	probably benign	Het
Rpgrip1	A	G	14: 52,368,641 (GRCm39)	H280R	possibly damaging	Het
Rpp40	C	A	13: 36,086,034 (GRCm39)	R132L	probably benign	Het
Ryr1	G	A	7: 28,790,364 (GRCm39)	Q1488*	probably null	Het
Sh3bp1	A	G	15: 78,791,421 (GRCm39)	M403V	probably benign	Het
Slc20a1	G	A	2: 129,049,757 (GRCm39)	D340N	probably benign	Het
Snrnp200	T	A	2: 127,074,979 (GRCm39)	N1517K	possibly damaging	Het
Srek1ip1	T	A	13: 104,973,981 (GRCm39)	H129Q	possibly damaging	Het
Thumpd2	A	T	17: 81,334,116 (GRCm39)	C491S	probably benign	Het
Tle3	A	T	9: 61,314,410 (GRCm39)	N204I	probably benign	Het
Tmem131	A	G	1: 36,862,167 (GRCm39)	V677A	probably benign	Het
Topaz1	T	G	9: 122,576,499 (GRCm39)	L30R	probably benign	Het
Trim35	T	A	14: 66,546,309 (GRCm39)	C359S	probably damaging	Het
Ttn	A	C	2: 76,774,865 (GRCm39)	V2105G	unknown	Het
Ube2o	A	G	11: 116,471,884 (GRCm39)	V119A	probably benign	Het
Ubr2	A	T	17: 47,279,308 (GRCm39)		probably null	Het
Uhmk1	A	G	1: 170,032,757 (GRCm39)	V347A	possibly damaging	Het
Utp4	C	T	8: 107,649,497 (GRCm39)	P649S	probably damaging	Het
Vmn2r28	G	A	7: 5,483,818 (GRCm39)	T794I	probably damaging	Het
Vmn2r61	T	G	7: 41,949,935 (GRCm39)	F785C	probably damaging	Het
Xpot	C	A	10: 121,458,848 (GRCm39)		probably benign	Het
Zfp729a	C	T	13: 67,768,294 (GRCm39)	R645H	probably benign	Het

Other mutations in Phf20

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00928:Phf20	APN	2	156,146,736 (GRCm39)	critical splice donor site	probably null
IGL01071:Phf20	APN	2	156,136,008 (GRCm39)	splice site	probably null
IGL01125:Phf20	APN	2	156,145,104 (GRCm39)	splice site	probably null
IGL01608:Phf20	APN	2	156,118,516 (GRCm39)	missense	probably benign
IGL01610:Phf20	APN	2	156,144,809 (GRCm39)	nonsense	probably null
IGL01845:Phf20	APN	2	156,118,577 (GRCm39)	nonsense	probably null
IGL02364:Phf20	APN	2	156,136,017 (GRCm39)	missense	possibly damaging	0.80
IGL02692:Phf20	APN	2	156,140,498 (GRCm39)	missense	probably damaging	1.00
IGL03039:Phf20	APN	2	156,140,461 (GRCm39)	missense	probably damaging	1.00
R0016:Phf20	UTSW	2	156,109,114 (GRCm39)	nonsense	probably null
R0189:Phf20	UTSW	2	156,145,061 (GRCm39)	missense	probably benign	0.02
R1532:Phf20	UTSW	2	156,144,969 (GRCm39)	missense	possibly damaging	0.89
R1572:Phf20	UTSW	2	156,129,754 (GRCm39)	missense	probably benign	0.17
R2007:Phf20	UTSW	2	156,129,874 (GRCm39)	missense	probably benign	0.00
R2191:Phf20	UTSW	2	156,118,574 (GRCm39)	missense	probably benign
R3011:Phf20	UTSW	2	156,129,946 (GRCm39)	missense	probably benign	0.32
R3024:Phf20	UTSW	2	156,129,787 (GRCm39)	missense	probably damaging	0.96
R4242:Phf20	UTSW	2	156,149,374 (GRCm39)	unclassified	probably benign
R5053:Phf20	UTSW	2	156,115,782 (GRCm39)	missense	probably benign	0.00
R5089:Phf20	UTSW	2	156,144,782 (GRCm39)	missense	probably benign
R5382:Phf20	UTSW	2	156,109,417 (GRCm39)	missense	probably damaging	1.00
R5649:Phf20	UTSW	2	156,093,688 (GRCm39)	splice site	probably null
R5707:Phf20	UTSW	2	156,138,691 (GRCm39)	splice site	probably null
R5751:Phf20	UTSW	2	156,109,261 (GRCm39)	missense	probably benign	0.01
R5805:Phf20	UTSW	2	156,149,214 (GRCm39)	missense	probably damaging	0.99
R5988:Phf20	UTSW	2	156,149,250 (GRCm39)	missense	probably damaging	1.00
R6179:Phf20	UTSW	2	156,140,573 (GRCm39)	missense	probably damaging	1.00
R6243:Phf20	UTSW	2	156,065,320 (GRCm39)	missense	probably benign	0.16
R6338:Phf20	UTSW	2	156,115,606 (GRCm39)	missense	possibly damaging	0.93
R6351:Phf20	UTSW	2	156,136,130 (GRCm39)	missense	possibly damaging	0.91
R6584:Phf20	UTSW	2	156,136,043 (GRCm39)	missense	probably damaging	0.99
R7248:Phf20	UTSW	2	156,135,331 (GRCm39)	splice site	probably null
R7329:Phf20	UTSW	2	156,146,552 (GRCm39)	missense	probably damaging	0.96
R7387:Phf20	UTSW	2	156,136,160 (GRCm39)	missense	probably damaging	1.00
R7528:Phf20	UTSW	2	156,144,928 (GRCm39)	nonsense	probably null
R7603:Phf20	UTSW	2	156,144,771 (GRCm39)	missense	probably benign
R7698:Phf20	UTSW	2	156,136,058 (GRCm39)	missense	probably damaging	1.00
R7968:Phf20	UTSW	2	156,135,464 (GRCm39)	missense	probably benign	0.00
R8415:Phf20	UTSW	2	156,129,913 (GRCm39)	missense	probably benign	0.07
R8843:Phf20	UTSW	2	156,144,843 (GRCm39)	missense	probably benign
R8849:Phf20	UTSW	2	156,118,440 (GRCm39)	missense	probably damaging	0.97
R9168:Phf20	UTSW	2	156,109,234 (GRCm39)	missense	probably benign	0.01
R9180:Phf20	UTSW	2	156,114,537 (GRCm39)	missense	probably benign	0.31
R9286:Phf20	UTSW	2	156,134,470 (GRCm39)	missense	probably damaging	0.98
R9297:Phf20	UTSW	2	156,115,690 (GRCm39)	missense	probably benign
R9318:Phf20	UTSW	2	156,115,690 (GRCm39)	missense	probably benign
R9414:Phf20	UTSW	2	156,136,167 (GRCm39)	missense	probably benign	0.38
RF011:Phf20	UTSW	2	156,146,541 (GRCm39)	critical splice acceptor site	probably benign
RF011:Phf20	UTSW	2	156,146,540 (GRCm39)	critical splice acceptor site	probably benign
RF028:Phf20	UTSW	2	156,146,543 (GRCm39)	critical splice acceptor site	probably benign
Z1190:Phf20	UTSW	2	156,129,979 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGTGAACCTGCCATTCTACCAC -3'
(R):5'- GGACATTCCACAGAGCCAAG -3'

Sequencing Primer
(F):5'- AGAGCTCCTCACGTTCGTG -3'
(R):5'- GCCAAGATACTCACTGGGG -3'

Posted On

2020-09-15