Mutagenetix > Incidental Mutation

Incidental Mutation 'R9374:Tcerg1l'

709493

Institutional Source

Beutler Lab

Gene Symbol

Tcerg1l

Ensembl Gene

ENSMUSG00000091002

Gene Name

transcription elongation regulator 1-like

Synonyms

5730476P14Rik

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9374 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

137810703-137999459 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 137995998 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 170 (D170G)

Ref Sequence

ENSEMBL: ENSMUSP00000124476 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000160436]

AlphaFold

Q3B807

Predicted Effect

possibly damaging
Transcript: ENSMUST00000160436
AA Change: D170G

PolyPhen 2 Score 0.955 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000124476
Gene: ENSMUSG00000091002
AA Change: D170G

Domain	Start	End	E-Value	Type
low complexity region	6	44	N/A	INTRINSIC
low complexity region	52	97	N/A	INTRINSIC
WW	146	178	2.11e1	SMART
low complexity region	235	249	N/A	INTRINSIC
WW	344	376	3.29e-4	SMART
low complexity region	402	415	N/A	INTRINSIC
FF	454	507	4.57e-12	SMART
FF	520	574	1.53e-4	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Arhgap21	A	T	2: 20,886,397 (GRCm39)	V270E	probably damaging	Het
Blvrb	A	G	7: 27,158,786 (GRCm39)	D62G	probably benign	Het
Ccdc68	T	A	18: 70,089,113 (GRCm39)	S219T	probably damaging	Het
Celf2	G	A	2: 6,590,886 (GRCm39)	T303I	possibly damaging	Het
Cep290	T	C	10: 100,372,729 (GRCm39)	S1176P	probably damaging	Het
Cpeb2	C	A	5: 43,391,584 (GRCm39)	S260*	probably null	Het
Dscam	A	T	16: 96,857,857 (GRCm39)	I51N	probably benign	Het
Erbb4	G	A	1: 68,779,642 (GRCm39)	Q45*	probably null	Het
Fam124a	T	G	14: 62,843,988 (GRCm39)	S499A	possibly damaging	Het
Hipk3	T	C	2: 104,301,850 (GRCm39)	N114S	probably benign	Het
Hnrnph3	T	C	10: 62,853,957 (GRCm39)	M54V	probably benign	Het
Map7d1	T	C	4: 126,127,429 (GRCm39)	E720G	unknown	Het
Mark2	G	T	19: 7,263,263 (GRCm39)	T201N	possibly damaging	Het
Mef2c	A	G	13: 83,810,461 (GRCm39)	N371S	probably benign	Het
Mgst3	T	C	1: 167,205,871 (GRCm39)	Y36C	probably damaging	Het
Mtor	C	T	4: 148,599,397 (GRCm39)	R1482C	probably damaging	Het
Ndst1	G	T	18: 60,845,931 (GRCm39)	T126K	probably damaging	Het
Nkain3	C	A	4: 20,778,431 (GRCm39)		probably benign	Het
Obscn	T	C	11: 58,922,787 (GRCm39)	I5850V	possibly damaging	Het
Or11g1	C	T	14: 50,651,625 (GRCm39)	S208F	probably benign	Het
Or5d14	C	T	2: 87,880,509 (GRCm39)	W153*	probably null	Het
Or6k4	A	T	1: 173,964,885 (GRCm39)	T192S	probably benign	Het
Pbx1	T	C	1: 168,258,910 (GRCm39)	D55G	possibly damaging	Het
Pi4ka	T	C	16: 17,125,574 (GRCm39)	E1187G		Het
Pkn1	A	T	8: 84,404,367 (GRCm39)	N543K	probably benign	Het
Plin1	T	C	7: 79,372,544 (GRCm39)	N343D	probably benign	Het
Prpf4	T	C	4: 62,336,131 (GRCm39)	V286A	probably benign	Het
Pyroxd2	A	G	19: 42,719,756 (GRCm39)		probably null	Het
Rbpms	A	G	8: 34,294,173 (GRCm39)	F190S	possibly damaging	Het
Rpl10a	T	A	17: 28,548,006 (GRCm39)	F49Y	possibly damaging	Het
Slc32a1	A	G	2: 158,455,995 (GRCm39)	T217A	probably damaging	Het
Slco6c1	T	C	1: 97,055,827 (GRCm39)	S25G	probably benign	Het
Slitrk5	C	T	14: 111,916,496 (GRCm39)	T40I	probably benign	Het
Smchd1	T	C	17: 71,718,843 (GRCm39)	N842S	possibly damaging	Het
Sorbs1	G	A	19: 40,361,923 (GRCm39)	R154*	probably null	Het
Stc2	A	G	11: 31,310,332 (GRCm39)	S235P	probably benign	Het
Tcaf2	C	T	6: 42,619,728 (GRCm39)	A100T	probably benign	Het
Tcf15	T	C	2: 151,986,039 (GRCm39)	L165P	probably damaging	Het
Tle5	T	C	10: 81,399,988 (GRCm39)	V62A	probably damaging	Het
Tmem200c	G	T	17: 69,148,682 (GRCm39)	G422W	probably damaging	Het
Tnfsf13b	A	G	8: 10,085,391 (GRCm39)	I294V	possibly damaging	Het
Tns3	T	A	11: 8,442,606 (GRCm39)	T586S	probably damaging	Het
Unc80	A	T	1: 66,629,460 (GRCm39)	E1319V	possibly damaging	Het
Vegfc	A	G	8: 54,622,180 (GRCm39)	I221V	possibly damaging	Het
Vmn1r86	A	T	7: 12,836,781 (GRCm39)	Y32N	possibly damaging	Het
Vmn2r111	T	A	17: 22,787,859 (GRCm39)	L497F	probably benign	Het
Wdr49	T	C	3: 75,230,931 (GRCm39)	D577G	probably benign	Het
Xpo4	A	G	14: 57,828,512 (GRCm39)	F783L	possibly damaging	Het

Other mutations in Tcerg1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00504:Tcerg1l	APN	7	137,811,533 (GRCm39)	missense	probably damaging	0.99
IGL01402:Tcerg1l	APN	7	137,861,568 (GRCm39)	missense	probably damaging	0.98
IGL01510:Tcerg1l	APN	7	137,996,034 (GRCm39)	splice site	probably benign
IGL01638:Tcerg1l	APN	7	137,881,805 (GRCm39)	missense	probably damaging	1.00
IGL01710:Tcerg1l	APN	7	137,996,789 (GRCm39)	missense	possibly damaging	0.81
IGL02547:Tcerg1l	APN	7	137,850,100 (GRCm39)	critical splice donor site	probably null
IGL02887:Tcerg1l	APN	7	137,831,619 (GRCm39)	missense	probably damaging	1.00
IGL03105:Tcerg1l	APN	7	137,850,173 (GRCm39)	splice site	probably benign
IGL03348:Tcerg1l	APN	7	137,815,100 (GRCm39)	missense	probably damaging	0.97
R0378:Tcerg1l	UTSW	7	137,878,384 (GRCm39)	missense	probably benign	0.01
R1474:Tcerg1l	UTSW	7	137,881,804 (GRCm39)	missense	probably damaging	0.99
R1589:Tcerg1l	UTSW	7	137,963,496 (GRCm39)	missense	probably damaging	0.99
R1658:Tcerg1l	UTSW	7	137,995,909 (GRCm39)	missense	probably damaging	0.98
R1792:Tcerg1l	UTSW	7	137,963,595 (GRCm39)	missense	probably benign	0.07
R1807:Tcerg1l	UTSW	7	137,996,826 (GRCm39)	missense	probably benign	0.34
R2920:Tcerg1l	UTSW	7	137,850,108 (GRCm39)	missense	probably damaging	0.99
R3148:Tcerg1l	UTSW	7	137,861,596 (GRCm39)	missense	probably benign
R4106:Tcerg1l	UTSW	7	137,861,673 (GRCm39)	missense	probably damaging	0.99
R4180:Tcerg1l	UTSW	7	137,878,405 (GRCm39)	critical splice acceptor site	probably null
R4241:Tcerg1l	UTSW	7	137,999,361 (GRCm39)	missense	unknown
R4898:Tcerg1l	UTSW	7	137,819,786 (GRCm39)	missense	probably damaging	0.99
R5652:Tcerg1l	UTSW	7	137,881,775 (GRCm39)	missense	probably damaging	0.97
R6646:Tcerg1l	UTSW	7	137,996,912 (GRCm39)	splice site	probably null
R6824:Tcerg1l	UTSW	7	137,995,844 (GRCm39)	critical splice donor site	probably null
R7414:Tcerg1l	UTSW	7	137,819,786 (GRCm39)	missense	probably damaging	0.97
R7490:Tcerg1l	UTSW	7	137,861,557 (GRCm39)	missense	probably damaging	1.00
R8810:Tcerg1l	UTSW	7	137,811,526 (GRCm39)	missense	possibly damaging	0.79
R8889:Tcerg1l	UTSW	7	137,999,260 (GRCm39)	nonsense	probably null
R8892:Tcerg1l	UTSW	7	137,999,260 (GRCm39)	nonsense	probably null
R9146:Tcerg1l	UTSW	7	137,831,588 (GRCm39)	missense	probably damaging	1.00
R9392:Tcerg1l	UTSW	7	137,815,164 (GRCm39)	missense	probably damaging	0.98
R9402:Tcerg1l	UTSW	7	137,811,551 (GRCm39)	missense	probably damaging	0.99
R9428:Tcerg1l	UTSW	7	137,811,490 (GRCm39)	missense	probably damaging	0.99
R9551:Tcerg1l	UTSW	7	137,995,998 (GRCm39)	missense	possibly damaging	0.95
R9552:Tcerg1l	UTSW	7	137,995,998 (GRCm39)	missense	possibly damaging	0.95
R9572:Tcerg1l	UTSW	7	137,881,787 (GRCm39)	missense	probably benign	0.07
R9624:Tcerg1l	UTSW	7	137,995,923 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- TATGATTAACACAGACAGGCACG -3'
(R):5'- TCTGGCTTCTCACAGCAACC -3'

Sequencing Primer
(F):5'- GTCACATTATCATTGCTAGTTAGGC -3'
(R):5'- ACAGCAACCCTTTCCTTTAAGG -3'

Posted On

2022-04-18