Mutagenetix > Incidental Mutation

Incidental Mutation 'R5652:Tcerg1l'

441485

Institutional Source

Beutler Lab

Gene Symbol

Tcerg1l

Ensembl Gene

ENSMUSG00000091002

Gene Name

transcription elongation regulator 1-like

Synonyms

5730476P14Rik

MMRRC Submission

043298-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5652 (G1)

Quality Score

210

Status

Not validated

Chromosome

Chromosomal Location

137810703-137999459 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 137881775 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 305 (R305C)

Ref Sequence

ENSEMBL: ENSMUSP00000124476 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000160436]

AlphaFold

Q3B807

Predicted Effect

probably damaging
Transcript: ENSMUST00000160436
AA Change: R305C

PolyPhen 2 Score 0.972 (Sensitivity: 0.77; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000124476
Gene: ENSMUSG00000091002
AA Change: R305C

Domain	Start	End	E-Value	Type
low complexity region	6	44	N/A	INTRINSIC
low complexity region	52	97	N/A	INTRINSIC
WW	146	178	2.11e1	SMART
low complexity region	235	249	N/A	INTRINSIC
WW	344	376	3.29e-4	SMART
low complexity region	402	415	N/A	INTRINSIC
FF	454	507	4.57e-12	SMART
FF	520	574	1.53e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162222

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.2%
20x: 95.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	T	C	14: 118,856,339 (GRCm39)	I334V	probably benign	Het
Adamts5	C	T	16: 85,696,156 (GRCm39)	A334T	probably damaging	Het
Adcy4	G	C	14: 56,010,900 (GRCm39)	F672L	probably benign	Het
Adgrl1	A	G	8: 84,656,444 (GRCm39)	Y254C	probably damaging	Het
Adnp2	A	G	18: 80,174,065 (GRCm39)	S115P	probably damaging	Het
Aox1	A	T	1: 58,134,356 (GRCm39)	S1110C	probably damaging	Het
Arhgap44	G	T	11: 64,915,064 (GRCm39)	N401K	probably damaging	Het
Atp23	A	T	10: 126,735,494 (GRCm39)	N63K	possibly damaging	Het
Atp8b1	G	C	18: 64,664,453 (GRCm39)	I1238M	probably benign	Het
Ccdc38	A	T	10: 93,391,448 (GRCm39)		probably null	Het
Celsr2	T	C	3: 108,304,051 (GRCm39)	D2364G	probably null	Het
Celsr3	G	A	9: 108,715,671 (GRCm39)	D2116N	probably benign	Het
Cenpf	A	G	1: 189,389,279 (GRCm39)	S1518P	probably damaging	Het
Clcn3	C	A	8: 61,372,387 (GRCm39)	V758L	possibly damaging	Het
Cmklr2	A	G	1: 63,222,626 (GRCm39)	V203A	probably benign	Het
Ctsf	T	C	19: 4,908,505 (GRCm39)	L288P	probably damaging	Het
Cwh43	A	G	5: 73,575,484 (GRCm39)	T334A	probably damaging	Het
Cyp3a57	A	T	5: 145,286,135 (GRCm39)		probably null	Het
Ddr1	C	T	17: 35,997,400 (GRCm39)	A531T	probably benign	Het
Dennd1a	A	G	2: 37,691,138 (GRCm39)	I260T	probably benign	Het
Dgkh	T	C	14: 78,865,201 (GRCm39)	H47R	probably damaging	Het
Dync1h1	G	A	12: 110,632,422 (GRCm39)	V4514I	possibly damaging	Het
Dync2h1	A	T	9: 7,116,638 (GRCm39)	M66K	probably benign	Het
Fam186a	T	G	15: 99,843,253 (GRCm39)	Y997S	possibly damaging	Het
Fam8a1	T	A	13: 46,827,814 (GRCm39)	L334H	probably damaging	Het
Fat4	C	T	3: 39,057,117 (GRCm39)	T4271I	probably damaging	Het
Fdxacb1	T	A	9: 50,679,705 (GRCm39)	L41Q	probably damaging	Het
Fgfr2	C	T	7: 129,863,593 (GRCm39)	V18M	probably damaging	Het
Gpa33	A	C	1: 165,992,714 (GRCm39)		probably null	Het
Gpr107	A	G	2: 31,075,601 (GRCm39)	I371V	probably benign	Het
H1f6	A	G	13: 23,880,219 (GRCm39)	K124R	probably benign	Het
Hectd2	T	C	19: 36,581,720 (GRCm39)	V420A	probably damaging	Het
Iglc3	A	G	16: 18,884,420 (GRCm39)		probably benign	Het
Igtp	A	G	11: 58,097,455 (GRCm39)	T209A	probably benign	Het
Itgb7	T	A	15: 102,124,638 (GRCm39)	N793I	possibly damaging	Het
Kansl1	G	A	11: 104,228,992 (GRCm39)	R870C	probably damaging	Het
Kcnh6	C	T	11: 105,899,811 (GRCm39)	R27C	probably damaging	Het
Kif2b	T	A	11: 91,466,656 (GRCm39)	E542D	possibly damaging	Het
Klhl24	C	A	16: 19,938,997 (GRCm39)	Y517*	probably null	Het
Klhl25	A	G	7: 75,515,895 (GRCm39)	D267G	probably benign	Het
Krr1	C	A	10: 111,813,288 (GRCm39)	F195L	possibly damaging	Het
Lsr	C	T	7: 30,658,456 (GRCm39)	G95D	probably damaging	Het
Matcap2	A	G	9: 22,335,786 (GRCm39)	T135A	probably benign	Het
Med15	A	T	16: 17,473,055 (GRCm39)	I504N	probably damaging	Het
Mug1	A	G	6: 121,817,140 (GRCm39)	R70G	probably benign	Het
Mypn	T	A	10: 62,971,580 (GRCm39)	Q820L	probably damaging	Het
Nlrp4f	A	T	13: 65,330,803 (GRCm39)	H863Q	probably benign	Het
Nudt9	G	A	5: 104,207,646 (GRCm39)	V213M	probably benign	Het
Or5ak4	T	A	2: 85,161,717 (GRCm39)	N175I	probably damaging	Het
Or5k14	A	G	16: 58,692,847 (GRCm39)	L222P	probably damaging	Het
Or7g16	A	G	9: 18,726,922 (GRCm39)	S223P	probably damaging	Het
Or8c13	T	C	9: 38,092,111 (GRCm39)	T3A	probably benign	Het
Orc2	A	G	1: 58,505,231 (GRCm39)	F475L	probably damaging	Het
Oxa1l	T	A	14: 54,604,289 (GRCm39)	L183*	probably null	Het
Pcdh20	T	C	14: 88,704,760 (GRCm39)	T847A	probably damaging	Het
Pcdha6	G	A	18: 37,101,889 (GRCm39)		probably null	Het
Pip5k1a	T	C	3: 94,974,750 (GRCm39)	N376S	probably benign	Het
Pkd1l1	T	C	11: 8,859,889 (GRCm39)	E573G	probably benign	Het
Pkp1	T	A	1: 135,810,335 (GRCm39)		probably null	Het
Pum1	T	C	4: 130,491,438 (GRCm39)	I643T	possibly damaging	Het
Rapgef3	A	G	15: 97,656,318 (GRCm39)	S328P	probably benign	Het
Raver1	A	G	9: 21,001,608 (GRCm39)	V75A	probably damaging	Het
Rbm28	T	C	6: 29,135,408 (GRCm39)	E511G	probably damaging	Het
Satb1	T	A	17: 52,049,823 (GRCm39)	T544S	probably damaging	Het
Sdcbp2	T	C	2: 151,431,135 (GRCm39)	V248A	probably benign	Het
Sema7a	A	G	9: 57,867,942 (GRCm39)	D506G	probably damaging	Het
Septin8	A	G	11: 53,428,044 (GRCm39)	E286G	probably damaging	Het
Sh3pxd2b	A	G	11: 32,372,812 (GRCm39)	I660V	probably damaging	Het
Stk38l	G	T	6: 146,674,826 (GRCm39)	D364Y	possibly damaging	Het
Sycp2	T	C	2: 178,000,498 (GRCm39)		probably null	Het
Tbc1d31	T	A	15: 57,815,062 (GRCm39)	S580T	probably damaging	Het
Tek	T	A	4: 94,743,561 (GRCm39)	Y859N	probably damaging	Het
Tjp1	A	T	7: 64,962,191 (GRCm39)		probably null	Het
Tmem132d	A	T	5: 127,861,859 (GRCm39)	I754N	possibly damaging	Het
Togaram1	G	A	12: 65,063,424 (GRCm39)	V1580I	probably benign	Het
Troap	A	G	15: 98,980,145 (GRCm39)	T442A	probably benign	Het
Ttn	A	T	2: 76,712,097 (GRCm39)		probably benign	Het
Twnk	T	A	19: 44,995,732 (GRCm39)	V55E	possibly damaging	Het
Uggt1	A	T	1: 36,255,234 (GRCm39)	Y225*	probably null	Het
Vmn2r109	A	G	17: 20,760,781 (GRCm39)	*859Q	probably null	Het
Vmn2r17	A	T	5: 109,577,430 (GRCm39)	I494L	probably benign	Het
Vmn2r88	T	C	14: 51,656,029 (GRCm39)	V746A	probably damaging	Het
Yae1d1	A	G	13: 18,166,291 (GRCm39)	L57P	probably damaging	Het
Zfp26	G	A	9: 20,349,137 (GRCm39)	R476*	probably null	Het
Zmynd8	T	A	2: 165,649,618 (GRCm39)	Q816L	probably damaging	Het
Zswim8	A	T	14: 20,763,495 (GRCm39)	H414L	possibly damaging	Het

Other mutations in Tcerg1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00504:Tcerg1l	APN	7	137,811,533 (GRCm39)	missense	probably damaging	0.99
IGL01402:Tcerg1l	APN	7	137,861,568 (GRCm39)	missense	probably damaging	0.98
IGL01510:Tcerg1l	APN	7	137,996,034 (GRCm39)	splice site	probably benign
IGL01638:Tcerg1l	APN	7	137,881,805 (GRCm39)	missense	probably damaging	1.00
IGL01710:Tcerg1l	APN	7	137,996,789 (GRCm39)	missense	possibly damaging	0.81
IGL02547:Tcerg1l	APN	7	137,850,100 (GRCm39)	critical splice donor site	probably null
IGL02887:Tcerg1l	APN	7	137,831,619 (GRCm39)	missense	probably damaging	1.00
IGL03105:Tcerg1l	APN	7	137,850,173 (GRCm39)	splice site	probably benign
IGL03348:Tcerg1l	APN	7	137,815,100 (GRCm39)	missense	probably damaging	0.97
R0378:Tcerg1l	UTSW	7	137,878,384 (GRCm39)	missense	probably benign	0.01
R1474:Tcerg1l	UTSW	7	137,881,804 (GRCm39)	missense	probably damaging	0.99
R1589:Tcerg1l	UTSW	7	137,963,496 (GRCm39)	missense	probably damaging	0.99
R1658:Tcerg1l	UTSW	7	137,995,909 (GRCm39)	missense	probably damaging	0.98
R1792:Tcerg1l	UTSW	7	137,963,595 (GRCm39)	missense	probably benign	0.07
R1807:Tcerg1l	UTSW	7	137,996,826 (GRCm39)	missense	probably benign	0.34
R2920:Tcerg1l	UTSW	7	137,850,108 (GRCm39)	missense	probably damaging	0.99
R3148:Tcerg1l	UTSW	7	137,861,596 (GRCm39)	missense	probably benign
R4106:Tcerg1l	UTSW	7	137,861,673 (GRCm39)	missense	probably damaging	0.99
R4180:Tcerg1l	UTSW	7	137,878,405 (GRCm39)	critical splice acceptor site	probably null
R4241:Tcerg1l	UTSW	7	137,999,361 (GRCm39)	missense	unknown
R4898:Tcerg1l	UTSW	7	137,819,786 (GRCm39)	missense	probably damaging	0.99
R6646:Tcerg1l	UTSW	7	137,996,912 (GRCm39)	splice site	probably null
R6824:Tcerg1l	UTSW	7	137,995,844 (GRCm39)	critical splice donor site	probably null
R7414:Tcerg1l	UTSW	7	137,819,786 (GRCm39)	missense	probably damaging	0.97
R7490:Tcerg1l	UTSW	7	137,861,557 (GRCm39)	missense	probably damaging	1.00
R8810:Tcerg1l	UTSW	7	137,811,526 (GRCm39)	missense	possibly damaging	0.79
R8889:Tcerg1l	UTSW	7	137,999,260 (GRCm39)	nonsense	probably null
R8892:Tcerg1l	UTSW	7	137,999,260 (GRCm39)	nonsense	probably null
R9146:Tcerg1l	UTSW	7	137,831,588 (GRCm39)	missense	probably damaging	1.00
R9374:Tcerg1l	UTSW	7	137,995,998 (GRCm39)	missense	possibly damaging	0.95
R9392:Tcerg1l	UTSW	7	137,815,164 (GRCm39)	missense	probably damaging	0.98
R9402:Tcerg1l	UTSW	7	137,811,551 (GRCm39)	missense	probably damaging	0.99
R9428:Tcerg1l	UTSW	7	137,811,490 (GRCm39)	missense	probably damaging	0.99
R9551:Tcerg1l	UTSW	7	137,995,998 (GRCm39)	missense	possibly damaging	0.95
R9552:Tcerg1l	UTSW	7	137,995,998 (GRCm39)	missense	possibly damaging	0.95
R9572:Tcerg1l	UTSW	7	137,881,787 (GRCm39)	missense	probably benign	0.07
R9624:Tcerg1l	UTSW	7	137,995,923 (GRCm39)	missense	possibly damaging	0.71

Predicted Primers

PCR Primer
(F):5'- TGCCAGCCTGTAGTTCAGAG -3'
(R):5'- ACTCAGCATCAGGGTTACATTGTC -3'

Sequencing Primer
(F):5'- CCAGCCTGTAGTTCAGAGAAGACTG -3'
(R):5'- GCATCAGGGTTACATTGTCATTAGAC -3'

Posted On

2016-11-08