Mutagenetix > Incidental Mutation

Incidental Mutation 'R1946:Nfe2l3'

216671

Institutional Source

Beutler Lab

Gene Symbol

Nfe2l3

Ensembl Gene

ENSMUSG00000029832

Gene Name

nuclear factor, erythroid derived 2, like 3

Synonyms

Nrf3

MMRRC Submission

039964-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1946 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

51409650-51435748 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 51434295 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Proline at position 285 (Q285P)

Ref Sequence

ENSEMBL: ENSMUSP00000005103 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005103] [ENSMUST00000069949] [ENSMUST00000090002] [ENSMUST00000160133] [ENSMUST00000203954] [ENSMUST00000204158]

AlphaFold

Q9WTM4

Predicted Effect

probably damaging
Transcript: ENSMUST00000005103
AA Change: Q285P

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000005103
Gene: ENSMUSG00000029832
AA Change: Q285P

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
low complexity region	117	134	N/A	INTRINSIC
low complexity region	145	155	N/A	INTRINSIC
low complexity region	390	405	N/A	INTRINSIC
BRLZ	539	603	3.68e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000069949

SMART Domains

Protein: ENSMUSP00000067491
Gene: ENSMUSG00000004980

Domain	Start	End	E-Value	Type
RRM	10	82	1.51e-23	SMART
RRM	101	173	7.64e-20	SMART
Pfam:HnRNPA1	245	282	5.1e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000090002

SMART Domains

Protein: ENSMUSP00000087453
Gene: ENSMUSG00000004980

Domain	Start	End	E-Value	Type
RRM	10	82	1.51e-23	SMART
RRM	101	173	7.64e-20	SMART
low complexity region	186	295	N/A	INTRINSIC
low complexity region	310	341	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160133

SMART Domains

Protein: ENSMUSP00000124920
Gene: ENSMUSG00000029832

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
low complexity region	117	134	N/A	INTRINSIC
low complexity region	145	155	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000203954

SMART Domains

Protein: ENSMUSP00000145028
Gene: ENSMUSG00000004980

Domain	Start	End	E-Value	Type
RRM	22	94	1.51e-23	SMART
RRM	113	185	7.64e-20	SMART
low complexity region	198	307	N/A	INTRINSIC
low complexity region	322	353	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000204158

SMART Domains

Protein: ENSMUSP00000145383
Gene: ENSMUSG00000004980

Domain	Start	End	E-Value	Type
RRM	10	82	1.51e-23	SMART
RRM	101	173	7.64e-20	SMART
Pfam:HnRNPA1	245	282	9.5e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204885

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cap 'n' collar basic-region leucine zipper family of transcription factors. The encoded protein heterodimerizes with small musculoaponeurotic fibrosarcoma factors to bind antioxidant response elements in target genes. This protein is a membrane bound glycoprotein that is targeted to the endoplasmic reticulum and the nuclear envelope. Pseudogenes of this gene are found on chromosomes 16, 17, and 18. [provided by RefSeq, Mar 2009]
PHENOTYPE: Mice homozygous for disruptions in this gene display a normal phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdh	A	G	5: 77,039,551 (GRCm39)	S253P	probably damaging	Het
Adamts5	C	A	16: 85,696,131 (GRCm39)	C342F	probably damaging	Het
Adgrv1	C	T	13: 81,522,368 (GRCm39)	C5923Y	probably damaging	Het
Aen	G	C	7: 78,552,420 (GRCm39)	E32Q	probably damaging	Het
Apba2	T	C	7: 64,394,378 (GRCm39)		probably null	Het
Arhgap44	A	G	11: 64,902,922 (GRCm39)	M509T	probably damaging	Het
Arpc1b	A	G	5: 145,059,443 (GRCm39)	T56A	probably null	Het
Atoh1	T	C	6: 64,706,443 (GRCm39)	V46A	probably benign	Het
Bmpr2	T	C	1: 59,907,556 (GRCm39)	V883A	possibly damaging	Het
Bpifa1	A	T	2: 153,987,554 (GRCm39)	I135F	probably damaging	Het
Bsn	A	G	9: 107,991,850 (GRCm39)	F1301L	probably damaging	Het
Capn13	T	C	17: 73,657,520 (GRCm39)	E240G	possibly damaging	Het
Ccdc18	A	G	5: 108,376,861 (GRCm39)	E1434G	probably damaging	Het
Coq8b	G	A	7: 26,939,299 (GRCm39)	V150I	possibly damaging	Het
Cpn1	G	A	19: 43,944,957 (GRCm39)	T450M	probably benign	Het
Dlg4	A	G	11: 69,930,401 (GRCm39)	Y432C	probably damaging	Het
Dnah8	C	A	17: 30,931,359 (GRCm39)	T1458K	probably benign	Het
Dock5	A	T	14: 68,023,765 (GRCm39)	M1132K	probably damaging	Het
Dsg2	A	G	18: 20,713,605 (GRCm39)	D192G	probably damaging	Het
F930017D23Rik	G	A	10: 43,469,440 (GRCm39)		noncoding transcript	Het
Fndc11	A	T	2: 180,863,627 (GRCm39)	D144V	probably benign	Het
Fut2	A	G	7: 45,300,748 (GRCm39)	F8S	probably damaging	Het
Gad2	A	T	2: 22,575,440 (GRCm39)	T515S	probably benign	Het
Ganab	T	A	19: 8,888,172 (GRCm39)	D439E	probably damaging	Het
Gm10228	C	A	16: 88,838,241 (GRCm39)	G21V	unknown	Het
Grm3	A	G	5: 9,562,123 (GRCm39)	W576R	probably damaging	Het
Gsdmc4	C	A	15: 63,774,629 (GRCm39)	D51Y	probably benign	Het
Hmcn2	T	C	2: 31,295,647 (GRCm39)	S2619P	probably damaging	Het
Kcnq2	T	A	2: 180,730,244 (GRCm39)	D446V	probably benign	Het
Kera	A	G	10: 97,445,009 (GRCm39)	K123E	probably benign	Het
Kmt2c	A	T	5: 25,520,152 (GRCm39)	V1986E	probably benign	Het
Lrp11	T	C	10: 7,499,540 (GRCm39)	Y244H	probably damaging	Het
Lrp1b	T	A	2: 40,555,159 (GRCm39)	D320V	unknown	Het
Lrrcc1	A	G	3: 14,615,453 (GRCm39)	R394G	probably benign	Het
Lrrk2	G	A	15: 91,620,864 (GRCm39)		probably null	Het
Map4k5	A	T	12: 69,892,529 (GRCm39)	D133E	probably damaging	Het
Megf11	A	T	9: 64,586,558 (GRCm39)	D461V	probably damaging	Het
Msrb3	A	G	10: 120,687,913 (GRCm39)	V54A	probably damaging	Het
Muc21	A	T	17: 35,933,416 (GRCm39)		probably benign	Het
Ncoa3	T	A	2: 165,901,097 (GRCm39)	N896K	possibly damaging	Het
Ncor2	G	A	5: 125,111,476 (GRCm39)	T1314I	probably damaging	Het
Nes	A	G	3: 87,885,821 (GRCm39)	Q1316R	possibly damaging	Het
Nkd1	C	T	8: 89,318,745 (GRCm39)	H357Y	probably damaging	Het
Nmt2	T	A	2: 3,323,672 (GRCm39)	I355N	probably benign	Het
Or10ak11	T	C	4: 118,687,223 (GRCm39)	N139S	probably benign	Het
Or1n1b	A	T	2: 36,780,458 (GRCm39)	M134K	possibly damaging	Het
Or5ae1	T	C	7: 84,565,487 (GRCm39)	S167P	probably benign	Het
Or5b3	T	C	19: 13,388,143 (GRCm39)	V70A	possibly damaging	Het
Or7a38	T	A	10: 78,752,758 (GRCm39)	I28N	probably damaging	Het
Or8b3	T	A	9: 38,314,182 (GRCm39)	M1K	probably null	Het
Otx1	G	T	11: 21,948,482 (GRCm39)	T46K	probably damaging	Het
Panx1	A	G	9: 14,918,822 (GRCm39)	C346R	probably benign	Het
Pcdhb16	T	A	18: 37,611,952 (GRCm39)	L304*	probably null	Het
Plet1	A	G	9: 50,415,652 (GRCm39)		probably null	Het
Plod2	A	G	9: 92,489,188 (GRCm39)	S707G	probably damaging	Het
Plscr4	G	A	9: 92,365,889 (GRCm39)	V120I	probably damaging	Het
Ppp1r12b	A	G	1: 134,820,008 (GRCm39)	V245A	probably damaging	Het
Ppp2r2d	A	G	7: 138,470,196 (GRCm39)	D19G	probably damaging	Het
Pramel31	T	A	4: 144,088,435 (GRCm39)	V77E	probably benign	Het
Rimbp3	G	A	16: 17,028,291 (GRCm39)	V572I	probably benign	Het
Ror2	T	C	13: 53,285,885 (GRCm39)	I110V	probably damaging	Het
Sec24d	A	T	3: 123,147,043 (GRCm39)	H667L	probably benign	Het
Sema3d	A	G	5: 12,623,810 (GRCm39)	Q573R	probably damaging	Het
Snx19	T	A	9: 30,343,620 (GRCm39)	N593K	probably damaging	Het
Sulf1	T	C	1: 12,867,131 (GRCm39)	V105A	probably benign	Het
Syngr3	T	C	17: 24,906,680 (GRCm39)	N45S	probably benign	Het
Tenm4	A	T	7: 96,385,015 (GRCm39)	H524L	probably damaging	Het
Tex30	C	T	1: 44,130,564 (GRCm39)	G68D	probably damaging	Het
Tmem43	A	T	6: 91,463,891 (GRCm39)	I389F	probably benign	Het
Trpm1	A	T	7: 63,873,556 (GRCm39)	N488Y	probably damaging	Het
Usf2	T	C	7: 30,655,663 (GRCm39)	T1A	probably null	Het
Vill	A	T	9: 118,887,560 (GRCm39)	H108L	probably benign	Het
Vmn1r16	T	C	6: 57,299,885 (GRCm39)	I246V	probably benign	Het
Vmn1r188	T	G	13: 22,272,815 (GRCm39)	S256R	possibly damaging	Het
Zfp12	G	A	5: 143,231,133 (GRCm39)	E487K	probably damaging	Het
Zfp24	AC	A	18: 24,147,476 (GRCm39)		probably null	Het

Other mutations in Nfe2l3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02705:Nfe2l3	APN	6	51,410,098 (GRCm39)	missense	probably damaging	0.96
IGL02803:Nfe2l3	APN	6	51,434,291 (GRCm39)	missense	possibly damaging	0.50
R0277:Nfe2l3	UTSW	6	51,434,448 (GRCm39)	missense	probably benign	0.30
R0693:Nfe2l3	UTSW	6	51,410,034 (GRCm39)	missense	possibly damaging	0.94
R1397:Nfe2l3	UTSW	6	51,410,274 (GRCm39)	missense	probably benign	0.00
R1455:Nfe2l3	UTSW	6	51,434,744 (GRCm39)	missense	possibly damaging	0.91
R1541:Nfe2l3	UTSW	6	51,434,585 (GRCm39)	missense	probably damaging	0.98
R1753:Nfe2l3	UTSW	6	51,410,392 (GRCm39)	missense	probably null	0.96
R2034:Nfe2l3	UTSW	6	51,435,350 (GRCm39)	missense	possibly damaging	0.50
R3807:Nfe2l3	UTSW	6	51,434,357 (GRCm39)	nonsense	probably null
R3932:Nfe2l3	UTSW	6	51,433,595 (GRCm39)	missense	possibly damaging	0.94
R4271:Nfe2l3	UTSW	6	51,433,614 (GRCm39)	missense	probably damaging	0.99
R4604:Nfe2l3	UTSW	6	51,427,992 (GRCm39)	missense	probably damaging	0.99
R4816:Nfe2l3	UTSW	6	51,433,604 (GRCm39)	missense	probably damaging	0.99
R5765:Nfe2l3	UTSW	6	51,434,226 (GRCm39)	missense	probably damaging	1.00
R5893:Nfe2l3	UTSW	6	51,434,832 (GRCm39)	missense	probably damaging	1.00
R7378:Nfe2l3	UTSW	6	51,434,276 (GRCm39)	nonsense	probably null
R7490:Nfe2l3	UTSW	6	51,434,524 (GRCm39)	missense	possibly damaging	0.65
R7624:Nfe2l3	UTSW	6	51,435,252 (GRCm39)	missense	probably damaging	1.00
R8210:Nfe2l3	UTSW	6	51,428,065 (GRCm39)	missense	probably benign	0.00
R8678:Nfe2l3	UTSW	6	51,435,153 (GRCm39)	missense	possibly damaging	0.54
R9071:Nfe2l3	UTSW	6	51,434,243 (GRCm39)	missense	probably benign	0.01
R9146:Nfe2l3	UTSW	6	51,410,172 (GRCm39)	missense	probably damaging	0.99
R9625:Nfe2l3	UTSW	6	51,434,925 (GRCm39)	missense	probably damaging	0.99
Z1177:Nfe2l3	UTSW	6	51,410,277 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- CCCAGGTTCATCAGCATATTCTG -3'
(R):5'- TTTGATTGTCAAACGGTGGAAGAG -3'

Sequencing Primer
(F):5'- GGTTCATCAGCATATTCTGAGATAAC -3'
(R):5'- AGACATTGCAGGAGTGGCTTG -3'

Posted On

2014-08-01