Incidental Mutation 'R3622:Snrpb'
ID 268656
Institutional Source Beutler Lab
Gene Symbol Snrpb
Ensembl Gene ENSMUSG00000027404
Gene Name small nuclear ribonucleoprotein B
Synonyms SM-B, SNRNP-B, SM11, SMB
MMRRC Submission 040677-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.964) question?
Stock # R3622 (G1)
Quality Score 225
Status Validated
Chromosome 2
Chromosomal Location 130013555-130021323 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 130017299 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Leucine at position 73 (R73L)
Ref Sequence ENSEMBL: ENSMUSP00000099488 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103199] [ENSMUST00000147570]
AlphaFold P27048
Predicted Effect probably null
Transcript: ENSMUST00000103199
AA Change: R73L

PolyPhen 2 Score 0.867 (Sensitivity: 0.83; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000099488
Gene: ENSMUSG00000027404
AA Change: R73L

DomainStartEndE-ValueType
Sm 7 82 1.06e-24 SMART
low complexity region 98 117 N/A INTRINSIC
low complexity region 151 164 N/A INTRINSIC
low complexity region 169 229 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139225
Predicted Effect probably benign
Transcript: ENSMUST00000147570
SMART Domains Protein: ENSMUSP00000143633
Gene: ENSMUSG00000027404

DomainStartEndE-ValueType
Sm 7 64 6.9e-17 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000150835
Meta Mutation Damage Score 0.9447 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 97.2%
  • 20x: 95.1%
Validation Efficiency 100% (42/42)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is one of several nuclear proteins that are found in common among U1, U2, U4/U6, and U5 small ribonucleoprotein particles (snRNPs). These snRNPs are involved in pre-mRNA splicing, and the encoded protein may also play a role in pre-mRNA splicing or snRNP structure. Autoantibodies from patients with systemic lupus erythematosus frequently recognize epitopes on the encoded protein. Two transcript variants encoding different isoforms (B and B') have been found for this gene. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 T A 7: 119,950,036 (GRCm39) Y503* probably null Het
Akap9 C A 5: 4,026,235 (GRCm39) Q1297K possibly damaging Het
Dffb T C 4: 154,049,976 (GRCm39) T296A probably damaging Het
Dpf1 G A 7: 29,015,631 (GRCm39) probably null Het
Elp1 A T 4: 56,759,925 (GRCm39) probably null Het
Grid2ip T C 5: 143,371,774 (GRCm39) S666P probably damaging Het
Gucy2e T A 11: 69,115,877 (GRCm39) E835V probably damaging Het
Hdac5 G A 11: 102,086,644 (GRCm39) P120S probably benign Het
Htr1d T C 4: 136,170,815 (GRCm39) I348T probably damaging Het
Hyal4 A T 6: 24,765,737 (GRCm39) S364C probably damaging Het
Igkv1-133 A T 6: 67,701,944 (GRCm39) Q16L probably benign Het
Itga10 C T 3: 96,559,054 (GRCm39) probably benign Het
Met A T 6: 17,549,085 (GRCm39) D979V probably damaging Het
Mga A G 2: 119,772,245 (GRCm39) T1702A probably damaging Het
Midn A G 10: 79,986,144 (GRCm39) D78G probably benign Het
Muc5b T C 7: 141,405,595 (GRCm39) probably benign Het
Oma1 T C 4: 103,223,288 (GRCm39) I491T probably benign Het
Or1e30 A G 11: 73,678,567 (GRCm39) T268A probably benign Het
Or5ak24 C T 2: 85,260,837 (GRCm39) C112Y probably benign Het
Or5b107 T A 19: 13,143,020 (GRCm39) M214K probably benign Het
Or8b48 A G 9: 38,492,792 (GRCm39) Y73C probably damaging Het
Pbld2 T C 10: 62,897,470 (GRCm39) L57P probably damaging Het
Phka2 T A X: 159,327,291 (GRCm39) Y334* probably null Het
Plin4 G T 17: 56,411,112 (GRCm39) T973K possibly damaging Het
R3hdm4 C T 10: 79,748,515 (GRCm39) R143H possibly damaging Het
Rps18 G C 17: 34,171,247 (GRCm39) probably null Het
Samd9l A T 6: 3,374,032 (GRCm39) C1076* probably null Het
Scml4 T C 10: 42,806,607 (GRCm39) probably benign Het
Slc16a10 A G 10: 40,017,890 (GRCm39) V48A probably benign Het
Slc6a5 T C 7: 49,567,371 (GRCm39) V275A probably benign Het
Smad9 C T 3: 54,696,705 (GRCm39) R257W probably damaging Het
Srsf9 C T 5: 115,468,571 (GRCm39) A69V probably damaging Het
Stfa2 A G 16: 36,224,433 (GRCm39) Y90H probably damaging Het
Tgm6 T A 2: 129,993,681 (GRCm39) V640E possibly damaging Het
Tnrc6c C T 11: 117,640,451 (GRCm39) R1414C probably damaging Het
Tyk2 A T 9: 21,038,606 (GRCm39) C8S probably damaging Het
Upp2 G A 2: 58,680,128 (GRCm39) R300Q possibly damaging Het
Utp20 A G 10: 88,593,855 (GRCm39) probably benign Het
Veph1 C T 3: 66,122,858 (GRCm39) V224I probably benign Het
Vmn1r30 A T 6: 58,412,437 (GRCm39) F132I probably benign Het
Vmn2r116 A G 17: 23,605,025 (GRCm39) S113G probably benign Het
Vps53 A C 11: 76,008,609 (GRCm39) V237G probably benign Het
Other mutations in Snrpb
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01640:Snrpb APN 2 130,017,251 (GRCm39) missense probably benign 0.29
R3624:Snrpb UTSW 2 130,017,299 (GRCm39) missense probably null 0.87
R5905:Snrpb UTSW 2 130,021,196 (GRCm39) start gained probably benign
R7574:Snrpb UTSW 2 130,018,939 (GRCm39) missense probably benign 0.18
R8472:Snrpb UTSW 2 130,015,042 (GRCm39) missense probably damaging 0.96
Predicted Primers PCR Primer
(F):5'- ACTCACTGGCAAGGTAGCTG -3'
(R):5'- TGGCTTGGTAGGAAACAGCTATC -3'

Sequencing Primer
(F):5'- CTCACTGGCAAGGTAGCTGTTTTAAG -3'
(R):5'- ATCACTTAGCCTGGGGTACTGAC -3'
Posted On 2015-02-19