Mutagenetix > Incidental Mutation

Incidental Mutation 'R6362:Gpat2'

512491

Institutional Source

Beutler Lab

Gene Symbol

Gpat2

Ensembl Gene

ENSMUSG00000046338

Gene Name

glycerol-3-phosphate acyltransferase 2, mitochondrial

Synonyms

A530057A03Rik, Gpat2

MMRRC Submission

044512-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6362 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

127267119-127278012 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 127273838 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Arginine at position 294 (G294R)

Ref Sequence

ENSEMBL: ENSMUSP00000049619 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028848] [ENSMUST00000062211]

AlphaFold

Q14DK4

Predicted Effect

probably benign
Transcript: ENSMUST00000028848

SMART Domains

Protein: ENSMUSP00000028848
Gene: ENSMUSG00000027371

Domain	Start	End	E-Value	Type
low complexity region	47	53	N/A	INTRINSIC
Pfam:FAA_hydrolase	107	313	3.1e-75	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000062211
AA Change: G294R

PolyPhen 2 Score 0.896 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000049619
Gene: ENSMUSG00000046338
AA Change: G294R

Domain	Start	End	E-Value	Type
PlsC	199	333	1.45e-11	SMART
Blast:PlsC	347	387	7e-13	BLAST
low complexity region	431	468	N/A	INTRINSIC
low complexity region	515	528	N/A	INTRINSIC
low complexity region	593	613	N/A	INTRINSIC
low complexity region	664	675	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123327

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137366

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146757

Meta Mutation Damage Score

0.3984

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 96.0%

Validation Efficiency

99% (78/79)

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh5a1	T	G	13: 25,102,533 (GRCm39)	D310A	probably benign	Het
Als2cl	T	A	9: 110,724,514 (GRCm39)		probably null	Het
Amacr	C	A	15: 10,984,891 (GRCm39)	R170S	probably damaging	Het
Brwd1	C	T	16: 95,803,507 (GRCm39)	R2221Q	probably damaging	Het
Cacna1g	A	T	11: 94,330,533 (GRCm39)		probably null	Het
Cd3d	G	A	9: 44,897,589 (GRCm39)	D157N	probably damaging	Het
Cep131	T	C	11: 119,955,516 (GRCm39)	D1043G	probably damaging	Het
Cimip1	T	G	2: 173,369,967 (GRCm39)		probably null	Het
Cit	A	G	5: 116,024,735 (GRCm39)	D326G	probably benign	Het
Col16a1	G	C	4: 129,959,983 (GRCm39)	G370R	unknown	Het
Col6a3	T	A	1: 90,738,285 (GRCm39)	Y1078F	probably damaging	Het
Colgalt2	A	C	1: 152,347,549 (GRCm39)	Y161S	probably damaging	Het
Cyp2j13	A	G	4: 95,959,932 (GRCm39)	Y75H	probably damaging	Het
Daxx	G	A	17: 34,130,338 (GRCm39)	V118I	probably damaging	Het
Dennd5a	G	T	7: 109,533,472 (GRCm39)	C75*	probably null	Het
Diaph3	A	G	14: 87,009,566 (GRCm39)	L1071P	probably damaging	Het
Disp3	A	G	4: 148,338,765 (GRCm39)	L802P	possibly damaging	Het
Dmc1	A	G	15: 79,473,024 (GRCm39)	V141A	probably benign	Het
Dsc2	A	T	18: 20,168,520 (GRCm39)	Y45*	probably null	Het
Dspp	A	G	5: 104,323,900 (GRCm39)	I348V	probably benign	Het
Epb42	C	A	2: 120,856,260 (GRCm39)	C428F	possibly damaging	Het
Fam227a	G	T	15: 79,527,551 (GRCm39)	P100Q	possibly damaging	Het
Fer1l4	C	T	2: 155,890,170 (GRCm39)	V252I	probably benign	Het
Fhod1	C	A	8: 106,058,273 (GRCm39)		probably null	Het
Fhod3	G	T	18: 24,887,312 (GRCm39)	A68S	probably benign	Het
Gatm	T	C	2: 122,428,677 (GRCm39)	D328G	probably benign	Het
Gm6401	G	T	14: 41,789,727 (GRCm39)	H44N	probably benign	Het
Gpr84	G	A	15: 103,216,937 (GRCm39)	A380V	probably damaging	Het
Herc1	G	T	9: 66,379,190 (GRCm39)	W3492L	probably damaging	Het
Hjurp	A	T	1: 88,202,772 (GRCm39)	Y71N	possibly damaging	Het
Jag2	T	A	12: 112,883,742 (GRCm39)	K246N	probably damaging	Het
Klhl32	T	C	4: 24,629,195 (GRCm39)	D524G	probably null	Het
Lax1	A	G	1: 133,608,334 (GRCm39)	S136P	possibly damaging	Het
Lefty1	A	G	1: 180,764,725 (GRCm39)	K217E	probably benign	Het
Lgr5	A	G	10: 115,314,430 (GRCm39)	L169P	probably damaging	Het
Lrrc37	G	C	11: 103,511,478 (GRCm39)	N163K	unknown	Het
Mad1l1	A	T	5: 140,300,810 (GRCm39)	S29T	possibly damaging	Het
Man1a	T	C	10: 53,950,891 (GRCm39)	H77R	probably benign	Het
Met	C	T	6: 17,558,732 (GRCm39)	S1120F	probably damaging	Het
Mfsd4b2	A	T	10: 39,797,605 (GRCm39)	I250N	probably damaging	Het
Myod1	A	G	7: 46,026,305 (GRCm39)	H70R	possibly damaging	Het
Neb	T	C	2: 52,102,704 (GRCm39)	N4280S	probably benign	Het
Nudt6	T	C	3: 37,473,638 (GRCm39)	T28A	possibly damaging	Het
Nup85	A	G	11: 115,474,560 (GRCm39)	E628G	probably damaging	Het
Oaz3	A	T	3: 94,342,295 (GRCm39)	D120E	probably damaging	Het
Or2y3	A	T	17: 38,393,620 (GRCm39)	M83K	probably damaging	Het
Or5b102	A	T	19: 13,040,709 (GRCm39)		probably benign	Het
Or5be3	C	T	2: 86,863,633 (GRCm39)	A311T	probably benign	Het
Or5m8	C	A	2: 85,822,285 (GRCm39)	N41K	probably damaging	Het
Or6c1b	A	C	10: 129,272,812 (GRCm39)	I44L	probably damaging	Het
Osbpl8	A	T	10: 111,108,929 (GRCm39)	K404*	probably null	Het
Pcdhga2	A	G	18: 37,803,958 (GRCm39)	N601D	probably damaging	Het
Pld2	T	C	11: 70,445,501 (GRCm39)	Y638H	probably damaging	Het
Pramel27	A	G	4: 143,579,435 (GRCm39)	Y340C	probably damaging	Het
Prickle2	C	G	6: 92,435,596 (GRCm39)	V2L	possibly damaging	Het
Psmd6	G	A	14: 14,116,949 (GRCm38)	R125C	probably benign	Het
Rnaset2b	G	A	17: 7,259,093 (GRCm39)	V24I	probably benign	Het
Rusc2	A	T	4: 43,416,416 (GRCm39)	D574V	probably benign	Het
Scn8a	T	A	15: 100,837,996 (GRCm39)		probably null	Het
Sec11a	T	C	7: 80,572,879 (GRCm39)	E134G	probably benign	Het
Senp5	A	G	16: 31,808,702 (GRCm39)	V157A	probably damaging	Het
Shkbp1	C	T	7: 27,051,120 (GRCm39)		probably null	Het
Slc43a1	T	C	2: 84,690,128 (GRCm39)	L435P	probably damaging	Het
Spn	G	A	7: 126,735,895 (GRCm39)	P204L	possibly damaging	Het
Srr	T	A	11: 74,801,028 (GRCm39)	Q173L	probably damaging	Het
Star	C	G	8: 26,301,835 (GRCm39)	T222S	probably benign	Het
Timm22	T	A	11: 76,301,953 (GRCm39)	Y93N	probably damaging	Het
Tmc4	G	T	7: 3,678,458 (GRCm39)	Q58K	probably benign	Het
Tmem86b	C	T	7: 4,632,835 (GRCm39)	M1I	probably null	Het
Tmtc2	A	T	10: 105,205,831 (GRCm39)	I488N	probably damaging	Het
Tnxb	A	T	17: 34,913,362 (GRCm39)	Y1792F	probably damaging	Het
Tph1	T	A	7: 46,296,867 (GRCm39)	R443W	possibly damaging	Het
Ttyh1	T	A	7: 4,132,323 (GRCm39)	V253E	possibly damaging	Het
Usf3	A	G	16: 44,038,940 (GRCm39)	D1140G	probably benign	Het
Usp10	T	C	8: 120,668,055 (GRCm39)	S118P	probably benign	Het
Vmn2r63	C	T	7: 42,552,721 (GRCm39)	C845Y	probably benign	Het
Vmn2r72	G	T	7: 85,400,382 (GRCm39)	F222L	probably damaging	Het
Zfp654	G	A	16: 64,606,457 (GRCm39)	Q582*	probably null	Het
Zfp791	C	T	8: 85,846,279 (GRCm39)		probably benign	Het
Zfp879	T	A	11: 50,729,302 (GRCm39)	D32V	probably damaging	Het

Other mutations in Gpat2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00326:Gpat2	APN	2	127,274,316 (GRCm39)	missense	probably benign	0.01
IGL00479:Gpat2	APN	2	127,276,381 (GRCm39)	missense	probably damaging	0.99
IGL01393:Gpat2	APN	2	127,274,571 (GRCm39)	missense	probably damaging	1.00
IGL01759:Gpat2	APN	2	127,272,816 (GRCm39)	missense	possibly damaging	0.94
IGL01764:Gpat2	APN	2	127,269,456 (GRCm39)	missense	probably benign	0.18
IGL02631:Gpat2	APN	2	127,276,152 (GRCm39)	splice site	probably benign
IGL02657:Gpat2	APN	2	127,269,251 (GRCm39)	missense	probably benign	0.04
IGL02813:Gpat2	APN	2	127,276,375 (GRCm39)	missense	possibly damaging	0.90
IGL02873:Gpat2	APN	2	127,273,675 (GRCm39)	missense	probably benign	0.00
IGL02993:Gpat2	APN	2	127,269,486 (GRCm39)	missense	probably damaging	1.00
Hygroscopic	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
PIT4494001:Gpat2	UTSW	2	127,275,800 (GRCm39)	missense	probably benign	0.00
R0078:Gpat2	UTSW	2	127,270,169 (GRCm39)	missense	probably damaging	1.00
R0230:Gpat2	UTSW	2	127,277,765 (GRCm39)	missense	possibly damaging	0.95
R1619:Gpat2	UTSW	2	127,270,637 (GRCm39)	missense	probably benign	0.00
R1851:Gpat2	UTSW	2	127,276,739 (GRCm39)	missense	possibly damaging	0.77
R1939:Gpat2	UTSW	2	127,277,879 (GRCm39)	makesense	probably null
R2143:Gpat2	UTSW	2	127,275,682 (GRCm39)	missense	probably damaging	1.00
R2165:Gpat2	UTSW	2	127,270,211 (GRCm39)	missense	probably damaging	0.97
R2518:Gpat2	UTSW	2	127,270,211 (GRCm39)	missense	probably damaging	0.97
R3410:Gpat2	UTSW	2	127,270,211 (GRCm39)	missense	probably damaging	0.97
R3411:Gpat2	UTSW	2	127,270,211 (GRCm39)	missense	probably damaging	0.97
R3898:Gpat2	UTSW	2	127,277,018 (GRCm39)	missense	probably damaging	1.00
R4080:Gpat2	UTSW	2	127,275,542 (GRCm39)	missense	probably damaging	0.99
R4725:Gpat2	UTSW	2	127,273,902 (GRCm39)	missense	possibly damaging	0.83
R4841:Gpat2	UTSW	2	127,275,887 (GRCm39)	missense	probably benign	0.10
R5354:Gpat2	UTSW	2	127,270,643 (GRCm39)	missense	probably damaging	1.00
R5941:Gpat2	UTSW	2	127,270,195 (GRCm39)	missense	possibly damaging	0.53
R6374:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6375:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6377:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6380:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6381:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6382:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6383:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6384:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6393:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6565:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6594:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6595:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6649:Gpat2	UTSW	2	127,274,355 (GRCm39)	missense	possibly damaging	0.81
R6665:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6666:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6667:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6668:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R6669:Gpat2	UTSW	2	127,273,838 (GRCm39)	missense	possibly damaging	0.90
R7031:Gpat2	UTSW	2	127,277,395 (GRCm39)	missense	probably damaging	0.99
R7096:Gpat2	UTSW	2	127,270,209 (GRCm39)	missense	probably benign	0.02
R7307:Gpat2	UTSW	2	127,276,810 (GRCm39)	missense	probably damaging	1.00
R7313:Gpat2	UTSW	2	127,270,215 (GRCm39)	missense	probably damaging	0.99
R7365:Gpat2	UTSW	2	127,268,901 (GRCm39)	splice site	probably null
R8111:Gpat2	UTSW	2	127,275,777 (GRCm39)	missense	probably damaging	1.00
R8113:Gpat2	UTSW	2	127,273,267 (GRCm39)	missense	possibly damaging	0.52
R8729:Gpat2	UTSW	2	127,275,739 (GRCm39)	missense	probably damaging	0.99
R9010:Gpat2	UTSW	2	127,277,146 (GRCm39)	missense	probably benign	0.28
R9146:Gpat2	UTSW	2	127,273,206 (GRCm39)	missense	possibly damaging	0.58
Z1176:Gpat2	UTSW	2	127,275,728 (GRCm39)	missense	probably damaging	1.00
Z1176:Gpat2	UTSW	2	127,272,802 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- ACAACTCAGAGGGCATCCTTG -3'
(R):5'- AACATTGTGCCACCCAGAACTG -3'

Sequencing Primer
(F):5'- CATCCTTGCAAGGGCTGTG -3'
(R):5'- GGTTGATAATCTACTCGGATCCCAG -3'

Posted On

2018-04-27