Incidental Mutation 'R6681:Slc30a6'
| ID |
527516 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc30a6
|
| Ensembl Gene |
ENSMUSG00000024069 |
| Gene Name |
solute carrier family 30 (zinc transporter), member 6 |
| Synonyms |
ZnT-6, ZnT6 |
| MMRRC Submission |
044800-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.355)
|
| Stock # |
R6681 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
17 |
| Chromosomal Location |
74702603-74731216 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 74711027 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Threonine
at position 40
(I40T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000024870
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000024870]
[ENSMUST00000179074]
|
| AlphaFold |
Q8BJM5 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000024870
AA Change: I40T
PolyPhen 2
Score 0.534 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000024870
Gene: ENSMUSG00000024069
AA Change: I40T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Cation_efflux
|
34 |
336 |
6.9e-45 |
PFAM |
|
low complexity region
|
371 |
392 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000179074
AA Change: I40T
PolyPhen 2
Score 0.380 (Sensitivity: 0.90; Specificity: 0.89)
|
| SMART Domains |
Protein: ENSMUSP00000136503
Gene: ENSMUSG00000024069
AA Change: I40T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Cation_efflux
|
34 |
260 |
5.7e-30 |
PFAM |
|
low complexity region
|
376 |
397 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.4%
- 20x: 95.6%
|
| Validation Efficiency |
98% (45/46) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that function as zinc transporters. This protein can regulate subcellular levels of zinc in the Golgi and vesicles. Expression of this gene is altered in the Alzheimer's disease brain plaques. [provided by RefSeq, Aug 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 46 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca4 |
A |
T |
3: 121,915,447 (GRCm39) |
T971S |
probably damaging |
Het |
| Catsperb |
C |
T |
12: 101,590,994 (GRCm39) |
Q1021* |
probably null |
Het |
| Ccdc62 |
A |
G |
5: 124,072,156 (GRCm39) |
T62A |
probably benign |
Het |
| Cuzd1 |
A |
G |
7: 130,913,412 (GRCm39) |
S402P |
probably damaging |
Het |
| Dcun1d1 |
C |
T |
3: 35,949,819 (GRCm39) |
V244M |
probably damaging |
Het |
| Dennd2c |
A |
G |
3: 103,038,977 (GRCm39) |
T42A |
probably benign |
Het |
| Dnah7a |
T |
C |
1: 53,560,385 (GRCm39) |
|
probably null |
Het |
| Dnase1l1 |
C |
T |
X: 73,320,644 (GRCm39) |
|
probably null |
Homo |
| Dpp4 |
A |
T |
2: 62,178,893 (GRCm39) |
F607L |
probably benign |
Het |
| Ech1 |
C |
T |
7: 28,529,763 (GRCm39) |
|
probably null |
Het |
| Fam53a |
A |
G |
5: 33,765,184 (GRCm39) |
L174P |
probably damaging |
Het |
| Fh1 |
T |
C |
1: 175,446,690 (GRCm39) |
D62G |
probably null |
Het |
| Gpatch11 |
T |
C |
17: 79,147,528 (GRCm39) |
I103T |
probably damaging |
Het |
| Hmgcll1 |
A |
T |
9: 75,988,731 (GRCm39) |
T169S |
probably benign |
Het |
| Kbtbd3 |
A |
T |
9: 4,330,687 (GRCm39) |
I354F |
probably benign |
Het |
| Kdm5b |
T |
C |
1: 134,541,007 (GRCm39) |
F700L |
possibly damaging |
Het |
| Mamdc4 |
C |
A |
2: 25,457,756 (GRCm39) |
G439V |
probably damaging |
Het |
| Mrps30 |
A |
T |
13: 118,517,134 (GRCm39) |
S362T |
probably damaging |
Het |
| Mug1 |
C |
T |
6: 121,815,683 (GRCm39) |
S29L |
possibly damaging |
Het |
| Myh2 |
G |
A |
11: 67,069,174 (GRCm39) |
D328N |
probably damaging |
Het |
| Or10j3b |
C |
A |
1: 173,043,973 (GRCm39) |
H252N |
probably damaging |
Het |
| Or5b98 |
A |
G |
19: 12,931,823 (GRCm39) |
Y290C |
probably damaging |
Het |
| Or5j1 |
T |
C |
2: 86,878,942 (GRCm39) |
T213A |
probably benign |
Het |
| Or8g54 |
T |
A |
9: 39,706,710 (GRCm39) |
I13N |
probably benign |
Het |
| Otx1 |
C |
A |
11: 21,947,037 (GRCm39) |
A91S |
probably damaging |
Het |
| Pira13 |
T |
A |
7: 3,825,251 (GRCm39) |
M464L |
probably benign |
Het |
| Pus7l |
G |
A |
15: 94,425,746 (GRCm39) |
P552S |
probably benign |
Het |
| Rest |
A |
G |
5: 77,428,844 (GRCm39) |
K421R |
probably damaging |
Het |
| Rttn |
C |
A |
18: 89,032,735 (GRCm39) |
H668N |
probably damaging |
Het |
| Scn9a |
T |
C |
2: 66,393,686 (GRCm39) |
I228V |
possibly damaging |
Het |
| Scp2 |
G |
T |
4: 107,948,513 (GRCm39) |
Q155K |
probably damaging |
Het |
| Sec61a2 |
G |
A |
2: 5,881,219 (GRCm39) |
R18* |
probably null |
Het |
| Serpinb8 |
T |
A |
1: 107,525,321 (GRCm39) |
M41K |
probably damaging |
Het |
| Sgsm2 |
A |
T |
11: 74,756,204 (GRCm39) |
W382R |
probably damaging |
Het |
| Slc26a10 |
G |
T |
10: 127,009,530 (GRCm39) |
T606N |
possibly damaging |
Het |
| Slfn5 |
G |
A |
11: 82,847,204 (GRCm39) |
E30K |
possibly damaging |
Het |
| Sorcs2 |
C |
A |
5: 36,555,154 (GRCm39) |
R79L |
probably benign |
Het |
| Tmc5 |
G |
A |
7: 118,268,527 (GRCm39) |
S865N |
probably damaging |
Het |
| Tmprss11c |
T |
A |
5: 86,437,119 (GRCm39) |
M1L |
possibly damaging |
Het |
| Trpv5 |
C |
G |
6: 41,630,288 (GRCm39) |
E601Q |
probably damaging |
Het |
| Ttc39b |
A |
T |
4: 83,158,285 (GRCm39) |
|
probably benign |
Het |
| Ttll6 |
T |
A |
11: 96,029,689 (GRCm39) |
C201S |
probably damaging |
Het |
| Vezt |
A |
G |
10: 93,832,859 (GRCm39) |
V204A |
probably benign |
Het |
| Vmn1r45 |
T |
A |
6: 89,910,985 (GRCm39) |
|
probably benign |
Het |
| Zfp433 |
A |
T |
10: 81,556,722 (GRCm39) |
H408L |
probably damaging |
Het |
| Zfp865 |
T |
C |
7: 5,032,450 (GRCm39) |
I145T |
possibly damaging |
Het |
|
| Other mutations in Slc30a6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01336:Slc30a6
|
APN |
17 |
74,715,834 (GRCm39) |
splice site |
probably benign |
|
|
IGL01592:Slc30a6
|
APN |
17 |
74,726,523 (GRCm39) |
splice site |
probably benign |
|
|
IGL02556:Slc30a6
|
APN |
17 |
74,711,054 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03033:Slc30a6
|
APN |
17 |
74,716,373 (GRCm39) |
nonsense |
probably null |
|
|
IGL03149:Slc30a6
|
APN |
17 |
74,730,018 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0355:Slc30a6
|
UTSW |
17 |
74,730,198 (GRCm39) |
missense |
probably benign |
|
|
R0791:Slc30a6
|
UTSW |
17 |
74,722,640 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R0792:Slc30a6
|
UTSW |
17 |
74,722,640 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R1507:Slc30a6
|
UTSW |
17 |
74,715,857 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1517:Slc30a6
|
UTSW |
17 |
74,715,842 (GRCm39) |
missense |
probably benign |
0.25 |
|
R1585:Slc30a6
|
UTSW |
17 |
74,725,610 (GRCm39) |
splice site |
probably benign |
|
|
R1944:Slc30a6
|
UTSW |
17 |
74,715,858 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2925:Slc30a6
|
UTSW |
17 |
74,708,999 (GRCm39) |
splice site |
probably benign |
|
|
R3891:Slc30a6
|
UTSW |
17 |
74,726,541 (GRCm39) |
missense |
probably benign |
0.19 |
|
R4840:Slc30a6
|
UTSW |
17 |
74,712,716 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4863:Slc30a6
|
UTSW |
17 |
74,719,649 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R5330:Slc30a6
|
UTSW |
17 |
74,730,190 (GRCm39) |
missense |
probably benign |
0.24 |
|
R5331:Slc30a6
|
UTSW |
17 |
74,730,190 (GRCm39) |
missense |
probably benign |
0.24 |
|
R5562:Slc30a6
|
UTSW |
17 |
74,719,700 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R6458:Slc30a6
|
UTSW |
17 |
74,730,108 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7419:Slc30a6
|
UTSW |
17 |
74,730,424 (GRCm39) |
missense |
probably benign |
|
|
R7457:Slc30a6
|
UTSW |
17 |
74,714,233 (GRCm39) |
missense |
probably benign |
0.05 |
|
R7596:Slc30a6
|
UTSW |
17 |
74,722,664 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7844:Slc30a6
|
UTSW |
17 |
74,711,088 (GRCm39) |
splice site |
probably null |
|
|
R8043:Slc30a6
|
UTSW |
17 |
74,730,018 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8097:Slc30a6
|
UTSW |
17 |
74,719,693 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8465:Slc30a6
|
UTSW |
17 |
74,722,661 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8557:Slc30a6
|
UTSW |
17 |
74,712,685 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R8878:Slc30a6
|
UTSW |
17 |
74,730,112 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9035:Slc30a6
|
UTSW |
17 |
74,726,586 (GRCm39) |
missense |
probably benign |
0.23 |
|
R9432:Slc30a6
|
UTSW |
17 |
74,719,699 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R9632:Slc30a6
|
UTSW |
17 |
74,730,059 (GRCm39) |
missense |
probably benign |
0.01 |
|
T0722:Slc30a6
|
UTSW |
17 |
74,719,319 (GRCm39) |
critical splice donor site |
probably null |
|
|
X0003:Slc30a6
|
UTSW |
17 |
74,719,319 (GRCm39) |
critical splice donor site |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AGGGAACTCGATTGATGATGATTTG -3'
(R):5'- TTTTCAAGAGGAGGCCAGCAG -3'
Sequencing Primer
(F):5'- TTGGTTAGATGTAGAAAACGTGCCAC -3'
(R):5'- TGGAACTCACTCTGTAGACCAGG -3'
|
| Posted On |
2018-07-23 |
Incidental Mutation