Mutagenetix > Incidental Mutation

Incidental Mutation 'R6923:Hdac1-ps'

539758

Institutional Source

Beutler Lab

Gene Symbol

Hdac1-ps

Ensembl Gene

ENSMUSG00000061062

Gene Name

histone deacetylase 1, pseudogene

Synonyms

EG15181, Gm10093

MMRRC Submission

045381-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.908) question?

Stock #

R6923 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

78799011-78800454 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 78800343 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 445 (T445A)

Ref Sequence

ENSEMBL: ENSMUSP00000078339 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079363]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000079363
AA Change: T445A

PolyPhen 2 Score 0.907 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000078339
Gene: ENSMUSG00000061062
AA Change: T445A

Domain	Start	End	E-Value	Type
Pfam:Hist_deacetyl	18	320	3.2e-84	PFAM
low complexity region	390	402	N/A	INTRINSIC
low complexity region	417	430	N/A	INTRINSIC
low complexity region	443	471	N/A	INTRINSIC

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.2%
20x: 97.4%

Validation Efficiency

100% (59/59)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Albfm1	A	G	5: 90,725,652 (GRCm39)	N288S	probably benign	Het
Ap4b1	T	A	3: 103,719,530 (GRCm39)	D81E	probably benign	Het
Atg16l1	A	T	1: 87,702,078 (GRCm39)		probably null	Het
Atp11a	A	G	8: 12,906,949 (GRCm39)	T459A	probably damaging	Het
Bloc1s5	T	A	13: 38,815,040 (GRCm39)	I40F	probably damaging	Het
Bltp2	T	A	11: 78,165,452 (GRCm39)	S1323T	possibly damaging	Het
Capn5	T	A	7: 97,778,461 (GRCm39)	Q386L	probably damaging	Het
Cbfa2t2	C	T	2: 154,376,903 (GRCm39)	H529Y	probably damaging	Het
Cd3d	T	C	9: 44,897,157 (GRCm39)		probably benign	Het
Cenpa	A	G	5: 30,829,806 (GRCm39)		probably null	Het
Chit1	A	T	1: 134,077,163 (GRCm39)	Y322F	probably null	Het
Cntnap5c	T	A	17: 58,399,345 (GRCm39)	N399K	possibly damaging	Het
Dock8	A	T	19: 25,072,970 (GRCm39)	T417S	probably benign	Het
Firrm	A	G	1: 163,814,454 (GRCm39)		probably null	Het
Fkbp2	A	G	19: 6,956,537 (GRCm39)			Het
Fsip1	G	A	2: 118,080,394 (GRCm39)	R121C	probably benign	Het
Gbp2b	T	C	3: 142,306,320 (GRCm39)	I131T	probably benign	Het
Gm12695	T	C	4: 96,658,053 (GRCm39)	N39D	probably benign	Het
Gm4922	T	C	10: 18,659,616 (GRCm39)	R369G	probably damaging	Het
Gpatch3	C	T	4: 133,309,836 (GRCm39)	L390F	probably damaging	Het
Gpd2	G	A	2: 57,245,800 (GRCm39)	M443I	probably damaging	Het
Gpt2	G	A	8: 86,244,681 (GRCm39)	E325K	probably benign	Het
Jph3	A	G	8: 122,480,110 (GRCm39)	T263A	possibly damaging	Het
Me3	C	A	7: 89,495,093 (GRCm39)	A337E	probably damaging	Het
Mndal	A	C	1: 173,712,264 (GRCm39)		probably null	Het
Msantd5l	C	T	11: 51,144,808 (GRCm39)	D158N	probably damaging	Het
Muc6	C	T	7: 141,217,453 (GRCm39)	E2342K	possibly damaging	Het
Neb	A	G	2: 52,076,076 (GRCm39)	V5659A	probably damaging	Het
Nkapd1	T	A	9: 50,521,610 (GRCm39)	I104L	probably benign	Het
Nrxn1	G	A	17: 91,395,661 (GRCm39)	A165V	probably benign	Het
Or5b94	T	A	19: 12,652,409 (GRCm39)	I280N	possibly damaging	Het
Or5b97	T	C	19: 12,878,676 (GRCm39)	N156S	probably benign	Het
Orc2	A	G	1: 58,539,534 (GRCm39)	L35S	probably benign	Het
Pax4	A	G	6: 28,447,118 (GRCm39)		probably null	Het
Pcdhb7	C	T	18: 37,475,522 (GRCm39)		probably null	Het
Pla2r1	C	T	2: 60,345,310 (GRCm39)	E349K	probably benign	Het
Polr2a	C	T	11: 69,626,787 (GRCm39)	A1516T	probably benign	Het
Pramel23	A	T	4: 143,425,676 (GRCm39)	I89N	probably benign	Het
Prpf38a	G	T	4: 108,427,401 (GRCm39)	D187E	possibly damaging	Het
Rdh16f1	T	A	10: 127,624,737 (GRCm39)		probably null	Het
S100z	T	A	13: 95,615,090 (GRCm39)	D25V	probably damaging	Het
Scamp2	T	G	9: 57,488,895 (GRCm39)	F199V	probably damaging	Het
Semp2l2b	C	A	10: 21,943,654 (GRCm39)	G109C	probably damaging	Het
Senp2	T	G	16: 21,830,326 (GRCm39)		probably benign	Het
Sltm	T	A	9: 70,481,892 (GRCm39)	S365T	probably damaging	Het
Smg6	C	G	11: 74,820,169 (GRCm39)	P147A	possibly damaging	Het
Spem2	T	A	11: 69,708,603 (GRCm39)	R121W	probably damaging	Het
Sufu	A	G	19: 46,439,405 (GRCm39)		probably null	Het
Syt2	T	C	1: 134,674,501 (GRCm39)	V313A	possibly damaging	Het
Tet2	C	T	3: 133,185,102 (GRCm39)		probably null	Het
Tfeb	T	A	17: 48,097,908 (GRCm39)	I232N	probably benign	Het
Ticrr	T	G	7: 79,341,601 (GRCm39)	I1062M	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Vrk2	G	A	11: 26,439,893 (GRCm39)	A226V	probably damaging	Het
Wnk1	A	T	6: 119,942,639 (GRCm39)		probably benign	Het
Xpo4	G	T	14: 57,841,168 (GRCm39)	T505K	probably benign	Het
Yy1	A	T	12: 108,759,594 (GRCm39)	I86F	probably benign	Het
Zc3h15	A	G	2: 83,487,400 (GRCm39)	D73G	possibly damaging	Het

Other mutations in Hdac1-ps

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01936:Hdac1-ps	APN	17	78,799,558 (GRCm39)	missense	probably damaging	1.00
IGL01983:Hdac1-ps	APN	17	78,800,282 (GRCm39)	missense	probably benign
IGL02543:Hdac1-ps	APN	17	78,799,303 (GRCm39)	missense	probably damaging	0.97
buttress	UTSW	17	78,800,343 (GRCm39)	missense	possibly damaging	0.91
Chartre	UTSW	17	78,799,969 (GRCm39)	missense	probably damaging	0.99
R1174:Hdac1-ps	UTSW	17	78,799,507 (GRCm39)	missense	probably benign	0.01
R1605:Hdac1-ps	UTSW	17	78,799,537 (GRCm39)	missense	probably damaging	0.98
R2416:Hdac1-ps	UTSW	17	78,799,945 (GRCm39)	missense	probably damaging	1.00
R2919:Hdac1-ps	UTSW	17	78,800,275 (GRCm39)	missense	probably damaging	0.98
R2920:Hdac1-ps	UTSW	17	78,800,275 (GRCm39)	missense	probably damaging	0.98
R3846:Hdac1-ps	UTSW	17	78,800,401 (GRCm39)	missense	possibly damaging	0.91
R4544:Hdac1-ps	UTSW	17	78,800,388 (GRCm39)	missense	probably benign	0.02
R4546:Hdac1-ps	UTSW	17	78,800,388 (GRCm39)	missense	probably benign	0.02
R5223:Hdac1-ps	UTSW	17	78,799,867 (GRCm39)	missense	probably benign	0.02
R5297:Hdac1-ps	UTSW	17	78,800,187 (GRCm39)	missense	probably benign
R6164:Hdac1-ps	UTSW	17	78,799,716 (GRCm39)	missense	probably damaging	0.99
R6568:Hdac1-ps	UTSW	17	78,800,017 (GRCm39)	missense	probably damaging	1.00
R6726:Hdac1-ps	UTSW	17	78,800,287 (GRCm39)	missense	probably damaging	0.99
R6901:Hdac1-ps	UTSW	17	78,800,089 (GRCm39)	missense	probably benign	0.07
R7838:Hdac1-ps	UTSW	17	78,799,447 (GRCm39)	missense	probably damaging	1.00
R8002:Hdac1-ps	UTSW	17	78,799,716 (GRCm39)	missense	probably damaging	0.99
R8728:Hdac1-ps	UTSW	17	78,800,332 (GRCm39)	missense	probably benign	0.01
R8821:Hdac1-ps	UTSW	17	78,799,969 (GRCm39)	missense	probably damaging	0.99
R8920:Hdac1-ps	UTSW	17	78,799,171 (GRCm39)	missense	probably benign	0.37
R9618:Hdac1-ps	UTSW	17	78,799,114 (GRCm39)	missense	probably damaging	1.00
R9649:Hdac1-ps	UTSW	17	78,799,075 (GRCm39)	missense	probably benign	0.03
X0060:Hdac1-ps	UTSW	17	78,799,557 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ATGCCATCCCAGAAGAGAGTG -3'
(R):5'- TTCTTTCCACGCAAATGGGG -3'

Sequencing Primer
(F):5'- CCAGAAGAGAGTGGGGATGAAGATG -3'
(R):5'- ATGGACAAGGTCGCTCTGG -3'

Posted On

2018-11-06