Mutagenetix > Incidental Mutation

Incidental Mutation 'R7713:Nepn'

594737

Institutional Source

Beutler Lab

Gene Symbol

Nepn

Ensembl Gene

ENSMUSG00000038624

Gene Name

nephrocan

Synonyms

periolin, Npn, 5730521E12Rik

MMRRC Submission

045771-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7713 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

52265068-52280721 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 52277274 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Isoleucine at position 337 (F337I)

Ref Sequence

ENSEMBL: ENSMUSP00000070130 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067085] [ENSMUST00000219730]

AlphaFold

Q9CQ76

Predicted Effect

probably benign
Transcript: ENSMUST00000067085
AA Change: F337I

PolyPhen 2 Score 0.160 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000070130
Gene: ENSMUSG00000038624
AA Change: F337I

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LRRNT	20	51	1.11e1	SMART
LRR	94	117	7.79e0	SMART
LRR	139	162	2.67e-1	SMART
LRR	163	183	3.27e2	SMART
LRR	185	208	5.72e-1	SMART
LRR	209	232	5.88e0	SMART
LRR	254	275	2.47e1	SMART
LRR_TYP	276	299	4.4e-2	SMART
LRR	321	344	2.84e1	SMART
low complexity region	346	360	N/A	INTRINSIC
LRR_TYP	390	413	6.23e-2	SMART
Blast:LRRCT	425	474	3e-28	BLAST
low complexity region	480	497	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000219730

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 41 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700113H08Rik	T	C	10: 87,066,173 (GRCm39)	S119P	possibly damaging	Het
Agtpbp1	T	A	13: 59,661,966 (GRCm39)	I282F	probably damaging	Het
Armh1	A	T	4: 117,071,425 (GRCm39)	M355K	possibly damaging	Het
Cep128	A	T	12: 90,986,096 (GRCm39)	D1013E	probably benign	Het
Clock	A	T	5: 76,393,267 (GRCm39)		probably null	Het
Cspg4b	T	G	13: 113,483,075 (GRCm39)	V1559G		Het
D630003M21Rik	G	A	2: 158,058,698 (GRCm39)	Q401*	probably null	Het
Dnah17	C	A	11: 117,915,997 (GRCm39)	V4302L	probably benign	Het
Drc3	A	G	11: 60,261,386 (GRCm39)	Y179C	probably benign	Het
Erbb3	T	C	10: 128,410,318 (GRCm39)	T647A	probably benign	Het
Esrp2	T	C	8: 106,860,908 (GRCm39)	T205A	probably benign	Het
Fbxw7	T	C	3: 84,874,872 (GRCm39)		probably null	Het
Fmn1	C	T	2: 113,356,159 (GRCm39)	P965S	unknown	Het
Fndc7	C	T	3: 108,777,979 (GRCm39)	V412M	possibly damaging	Het
G2e3	C	A	12: 51,415,839 (GRCm39)	A525E	probably damaging	Het
Gcfc2	C	T	6: 81,918,371 (GRCm39)	R354C	probably damaging	Het
Ggt1	T	A	10: 75,421,508 (GRCm39)	N510K	probably damaging	Het
Gnas	C	T	2: 174,140,820 (GRCm39)	T389I	unknown	Het
Hapln3	C	T	7: 78,767,121 (GRCm39)	R306H	probably benign	Het
Hydin	T	C	8: 111,320,444 (GRCm39)	L4496P	possibly damaging	Het
Iqgap2	T	A	13: 95,867,952 (GRCm39)	I219L	probably benign	Het
Kcnj2	T	C	11: 110,963,309 (GRCm39)	S234P	probably benign	Het
Lipf	T	A	19: 33,950,465 (GRCm39)	S286T	probably damaging	Het
Lrrc32	G	T	7: 98,148,545 (GRCm39)	G442W	probably damaging	Het
Megf10	GGCAGCAACAGCACCAGCAGCAACAGCACCAGCAGCA	GGCAGCAACAGCACCAGCAGCA	18: 57,427,071 (GRCm39)		probably benign	Het
Mtmr4	T	C	11: 87,488,550 (GRCm39)	V68A	probably damaging	Het
Mug2	T	C	6: 122,055,754 (GRCm39)	S1146P	possibly damaging	Het
Naa35	T	C	13: 59,745,919 (GRCm39)	I75T	probably benign	Het
Nf1	A	G	11: 79,316,432 (GRCm39)	M496V	probably benign	Het
Nthl1	A	T	17: 24,857,631 (GRCm39)	I277F	possibly damaging	Het
Or10a3	A	C	7: 108,479,889 (GRCm39)	I308S	probably damaging	Het
Or4p8	T	C	2: 88,728,122 (GRCm39)		probably benign	Het
Osr1	A	T	12: 9,629,253 (GRCm39)	Y42F	probably damaging	Het
Rad54l2	G	A	9: 106,594,422 (GRCm39)	R369W	probably damaging	Het
Ryr3	T	A	2: 112,465,691 (GRCm39)	T4828S	probably benign	Het
Slc25a54	T	A	3: 109,010,133 (GRCm39)	C211S	probably damaging	Het
Ube4b	C	T	4: 149,483,238 (GRCm39)	R10Q	possibly damaging	Het
Usp9y	G	A	Y: 1,304,411 (GRCm39)	Q2440*	probably null	Het
Yars1	G	T	4: 129,104,291 (GRCm39)	V312L	probably benign	Het
Zfp26	G	A	9: 20,352,630 (GRCm39)	T145I	probably benign	Het
Zic5	T	C	14: 122,701,525 (GRCm39)	N402S	unknown	Het

Other mutations in Nepn

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01122:Nepn	APN	10	52,267,911 (GRCm39)	missense	probably damaging	1.00
IGL01731:Nepn	APN	10	52,276,660 (GRCm39)	missense	probably benign	0.00
R0099:Nepn	UTSW	10	52,277,181 (GRCm39)	missense	probably damaging	0.96
R0123:Nepn	UTSW	10	52,276,533 (GRCm39)	missense	probably damaging	0.96
R0134:Nepn	UTSW	10	52,276,533 (GRCm39)	missense	probably damaging	0.96
R0225:Nepn	UTSW	10	52,276,533 (GRCm39)	missense	probably damaging	0.96
R0613:Nepn	UTSW	10	52,277,353 (GRCm39)	missense	probably damaging	1.00
R1482:Nepn	UTSW	10	52,276,512 (GRCm39)	missense	probably damaging	1.00
R2969:Nepn	UTSW	10	52,276,983 (GRCm39)	nonsense	probably null
R3731:Nepn	UTSW	10	52,280,110 (GRCm39)	missense	probably damaging	1.00
R3790:Nepn	UTSW	10	52,276,626 (GRCm39)	missense	probably damaging	1.00
R3958:Nepn	UTSW	10	52,276,804 (GRCm39)	missense	probably benign
R4423:Nepn	UTSW	10	52,267,911 (GRCm39)	missense	probably damaging	1.00
R5002:Nepn	UTSW	10	52,267,850 (GRCm39)	missense	probably benign
R5294:Nepn	UTSW	10	52,276,896 (GRCm39)	missense	probably benign	0.02
R5580:Nepn	UTSW	10	52,280,398 (GRCm39)	missense	probably damaging	0.98
R5607:Nepn	UTSW	10	52,277,233 (GRCm39)	missense	probably benign	0.10
R5986:Nepn	UTSW	10	52,280,168 (GRCm39)	missense	probably damaging	1.00
R7135:Nepn	UTSW	10	52,267,815 (GRCm39)	missense	probably damaging	1.00
R7256:Nepn	UTSW	10	52,277,089 (GRCm39)	missense	probably benign	0.01
R8213:Nepn	UTSW	10	52,267,855 (GRCm39)	missense	probably benign	0.00
R8432:Nepn	UTSW	10	52,267,880 (GRCm39)	missense	probably benign	0.15
R8463:Nepn	UTSW	10	52,276,896 (GRCm39)	missense	probably benign	0.23
R9315:Nepn	UTSW	10	52,267,869 (GRCm39)	missense	probably benign	0.02
R9684:Nepn	UTSW	10	52,276,801 (GRCm39)	missense	probably benign	0.34

Predicted Primers

PCR Primer
(F):5'- AACAACTCTGGAGGTTTCCC -3'
(R):5'- CTGGGAATTCTAAACCACTGCTTG -3'

Sequencing Primer
(F):5'- ACTCTGGAGGTTTCCCAAAAC -3'
(R):5'- AAACCACTGCTTGAAGCTTCTG -3'

Posted On

2019-11-12