Mutagenetix > Incidental Mutation

Incidental Mutation 'R7752:Dcp1b'

597292

Institutional Source

Beutler Lab

Gene Symbol

Dcp1b

Ensembl Gene

ENSMUSG00000041477

Gene Name

decapping mRNA 1B

Synonyms

B930050E02Rik

MMRRC Submission

045808-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.630) question?

Stock #

R7752 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

119152214-119198575 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 119152318 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 22 (R22L)

Ref Sequence

ENSEMBL: ENSMUSP00000108397 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000073909] [ENSMUST00000112777] [ENSMUST00000186889] [ENSMUST00000187474] [ENSMUST00000187940] [ENSMUST00000190285]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000073909
AA Change: R22L

PolyPhen 2 Score 0.112 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000073568
Gene: ENSMUSG00000041477
AA Change: R22L

Domain	Start	End	E-Value	Type
low complexity region	2	8	N/A	INTRINSIC
Pfam:DCP1	10	131	1.3e-53	PFAM
low complexity region	250	260	N/A	INTRINSIC
low complexity region	451	462	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112777
AA Change: R22L

PolyPhen 2 Score 0.645 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000108397
Gene: ENSMUSG00000041477
AA Change: R22L

Domain	Start	End	E-Value	Type
low complexity region	2	8	N/A	INTRINSIC
Pfam:DCP1	13	129	3e-46	PFAM
low complexity region	250	260	N/A	INTRINSIC
low complexity region	451	462	N/A	INTRINSIC
low complexity region	515	526	N/A	INTRINSIC
Pfam:mRNA_decap_C	536	578	2.1e-20	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000186889

SMART Domains

Protein: ENSMUSP00000140056
Gene: ENSMUSG00000051331

Domain	Start	End	E-Value	Type
low complexity region	56	69	N/A	INTRINSIC
Pfam:Ion_trans	191	434	1.5e-59	PFAM
PDB:4DEY\|B	435	533	5e-63	PDB
low complexity region	534	548	N/A	INTRINSIC
Pfam:Ion_trans	588	782	5.6e-46	PFAM
low complexity region	797	807	N/A	INTRINSIC
low complexity region	827	839	N/A	INTRINSIC
low complexity region	875	882	N/A	INTRINSIC
transmembrane domain	926	948	N/A	INTRINSIC
Pfam:Ion_trans	965	1195	2.7e-51	PFAM
Pfam:PKD_channel	1261	1512	1.3e-9	PFAM
Pfam:Ion_trans	1283	1505	1.7e-69	PFAM
Blast:EFh	1526	1554	5e-9	BLAST
Ca_chan_IQ	1640	1674	3.28e-15	SMART
low complexity region	1794	1804	N/A	INTRINSIC
low complexity region	1974	1988	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000187474

SMART Domains

Protein: ENSMUSP00000140961
Gene: ENSMUSG00000051331

Domain	Start	End	E-Value	Type
low complexity region	56	69	N/A	INTRINSIC
Pfam:Ion_trans	191	434	7.6e-60	PFAM
PDB:4DEY\|B	435	533	4e-63	PDB
low complexity region	534	548	N/A	INTRINSIC
Pfam:Ion_trans	588	782	2.8e-46	PFAM
low complexity region	797	807	N/A	INTRINSIC
low complexity region	827	839	N/A	INTRINSIC
low complexity region	875	882	N/A	INTRINSIC
transmembrane domain	926	948	N/A	INTRINSIC
Pfam:Ion_trans	965	1195	5.6e-51	PFAM
Pfam:PKD_channel	1261	1512	7.3e-10	PFAM
Pfam:Ion_trans	1283	1505	8.3e-70	PFAM
Blast:EFh	1526	1554	5e-9	BLAST
Ca_chan_IQ	1640	1674	3.28e-15	SMART
low complexity region	1794	1804	N/A	INTRINSIC
low complexity region	1974	1988	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000187940

SMART Domains

Protein: ENSMUSP00000141033
Gene: ENSMUSG00000051331

Domain	Start	End	E-Value	Type
low complexity region	56	69	N/A	INTRINSIC
Pfam:Ion_trans	191	434	7.6e-60	PFAM
PDB:4DEY\|B	435	533	4e-63	PDB
low complexity region	534	548	N/A	INTRINSIC
Pfam:Ion_trans	588	782	2.8e-46	PFAM
low complexity region	797	807	N/A	INTRINSIC
low complexity region	827	839	N/A	INTRINSIC
low complexity region	875	882	N/A	INTRINSIC
transmembrane domain	926	948	N/A	INTRINSIC
Pfam:Ion_trans	965	1195	5.6e-51	PFAM
Pfam:PKD_channel	1260	1512	5.8e-11	PFAM
Pfam:Ion_trans	1283	1505	1.2e-66	PFAM
Blast:EFh	1526	1554	5e-9	BLAST
Ca_chan_IQ	1640	1674	3.28e-15	SMART
low complexity region	1794	1804	N/A	INTRINSIC
low complexity region	1974	1988	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000190285

SMART Domains

Protein: ENSMUSP00000141015
Gene: ENSMUSG00000051331

Domain	Start	End	E-Value	Type
low complexity region	56	69	N/A	INTRINSIC
transmembrane domain	155	177	N/A	INTRINSIC
Pfam:Ion_trans	191	434	4e-58	PFAM
PDB:4DEY\|B	435	558	2e-57	PDB
low complexity region	559	573	N/A	INTRINSIC
transmembrane domain	579	598	N/A	INTRINSIC
Pfam:Ion_trans	613	807	1.5e-44	PFAM
low complexity region	822	832	N/A	INTRINSIC
low complexity region	852	864	N/A	INTRINSIC
low complexity region	900	907	N/A	INTRINSIC
transmembrane domain	951	973	N/A	INTRINSIC
Pfam:Ion_trans	990	1220	3e-49	PFAM
Pfam:PKD_channel	1285	1537	1.4e-7	PFAM
Pfam:Ion_trans	1308	1530	4.4e-68	PFAM
Blast:EFh	1551	1579	5e-9	BLAST
Ca_chan_IQ	1665	1699	2.5e-19	SMART
low complexity region	1819	1829	N/A	INTRINSIC
low complexity region	1999	2013	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a family of proteins that function in removing the 5' cap from mRNAs, which is a step in regulated mRNA decay. This protein localizes to cytoplasmic foci which are the site of mRNA breakdown and turnover. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Agfg2	A	T	5: 137,665,966 (GRCm39)	F98I	probably damaging	Het
Akap13	T	A	7: 75,327,006 (GRCm39)	N668K	possibly damaging	Het
Aox4	G	A	1: 58,293,107 (GRCm39)	V868I	not run	Het
Ccdc39	T	C	3: 33,886,766 (GRCm39)	R281G	possibly damaging	Het
Ccnt1	A	T	15: 98,441,797 (GRCm39)	D490E	probably benign	Het
Cfhr2	T	A	1: 139,741,322 (GRCm39)	I218F	probably damaging	Het
Clcn4	T	C	7: 7,296,936 (GRCm39)	K234R	probably benign	Het
Col4a2	A	T	8: 11,479,358 (GRCm39)	D747V	probably benign	Het
Cplane1	A	G	15: 8,299,190 (GRCm39)	E3126G	unknown	Het
Csf1r	T	A	18: 61,243,368 (GRCm39)	L128Q	probably damaging	Het
Ddx6	T	G	9: 44,538,960 (GRCm39)	F256C	probably damaging	Het
Diras1	C	T	10: 80,857,895 (GRCm39)	V119M	probably damaging	Het
Ect2l	T	A	10: 18,017,712 (GRCm39)	D681V	possibly damaging	Het
Eme1	G	T	11: 94,541,645 (GRCm39)	P59Q	probably damaging	Het
Farp1	G	C	14: 121,495,359 (GRCm39)	E605Q	probably damaging	Het
Frem1	G	T	4: 82,877,614 (GRCm39)	T1321K	probably benign	Het
Gcn1	T	A	5: 115,753,627 (GRCm39)	L2326Q	probably damaging	Het
Gpld1	T	A	13: 25,146,758 (GRCm39)	V240E	probably damaging	Het
Gpr4	C	A	7: 18,956,340 (GRCm39)	H87Q	probably damaging	Het
Ifi213	A	T	1: 173,394,784 (GRCm39)	S584T	probably benign	Het
Il36b	C	T	2: 24,048,826 (GRCm39)	T77M	possibly damaging	Het
Inf2	A	G	12: 112,576,118 (GRCm39)	E865G	unknown	Het
Klk1b1	T	C	7: 43,620,669 (GRCm39)	I253T	probably damaging	Het
Lcmt1	G	T	7: 122,969,030 (GRCm39)	M8I	unknown	Het
Mrs2	T	A	13: 25,202,549 (GRCm39)	D64V	possibly damaging	Het
Ms4a20	A	G	19: 11,079,224 (GRCm39)	I148T	probably benign	Het
Muc4	A	G	16: 32,589,108 (GRCm39)	Y755C		Het
Ncoa3	T	A	2: 165,907,688 (GRCm39)	L1099*	probably null	Het
Nlrp6	T	C	7: 140,507,353 (GRCm39)	V873A	possibly damaging	Het
Nup155	C	T	15: 8,145,926 (GRCm39)	P159L	possibly damaging	Het
Or10v1	A	T	19: 11,873,898 (GRCm39)	H171L	probably benign	Het
Or1ak2	A	T	2: 36,827,630 (GRCm39)	L166F	probably damaging	Het
Or4m1	A	T	14: 50,557,573 (GRCm39)	S240T	probably damaging	Het
Pex5	A	G	6: 124,380,860 (GRCm39)	S255P	probably damaging	Het
Pex5	T	C	6: 124,390,977 (GRCm39)	T58A	probably benign	Het
Phip	T	G	9: 82,772,203 (GRCm39)	M1115L	probably benign	Het
Ppl	T	G	16: 4,920,166 (GRCm39)	S410R	probably benign	Het
Ppp1r17	G	A	6: 55,999,441 (GRCm39)	D25N	probably damaging	Het
Pramel51	T	C	12: 88,142,769 (GRCm39)	E478G	probably damaging	Het
Prox2	T	A	12: 85,134,815 (GRCm39)	I489F	probably damaging	Het
Ptprb	C	G	10: 116,205,333 (GRCm39)	P1896A	probably benign	Het
Rgl2	T	C	17: 34,154,799 (GRCm39)	L601P	possibly damaging	Het
Sash1	C	T	10: 8,656,328 (GRCm39)	W221*	probably null	Het
Skint1	A	C	4: 111,876,399 (GRCm39)	T107P	probably damaging	Het
Slc41a2	A	G	10: 83,091,905 (GRCm39)	S453P	possibly damaging	Het
Sox11	A	T	12: 27,391,439 (GRCm39)	N323K	probably damaging	Het
Taf4	G	A	2: 179,573,822 (GRCm39)	T682M	probably damaging	Het
Thbd	C	A	2: 148,248,894 (GRCm39)	V325L	probably damaging	Het
Tmco5	T	C	2: 116,722,743 (GRCm39)	F288S	probably damaging	Het
Traj16	T	C	14: 54,440,645 (GRCm39)	Y19H	unknown	Het
Trip11	A	G	12: 101,853,233 (GRCm39)	V454A	probably benign	Het
Tsg101	G	T	7: 46,563,183 (GRCm39)	Q24K	probably benign	Het
Ttn	T	C	2: 76,555,370 (GRCm39)	E30545G	probably damaging	Het
Unkl	T	C	17: 25,437,627 (GRCm39)	S200P	probably damaging	Het
Vwa2	T	A	19: 56,897,672 (GRCm39)	I659N	probably damaging	Het
Wipf3	A	G	6: 54,458,896 (GRCm39)	I84V	probably benign	Het
Zfp592	T	G	7: 80,674,469 (GRCm39)	S478A	probably benign	Het
Zfp664	A	T	5: 124,962,839 (GRCm39)	K78*	probably null	Het
Zfp738	A	T	13: 67,821,110 (GRCm39)	L79*	probably null	Het
Zfyve28	C	T	5: 34,382,326 (GRCm39)	R258Q	probably damaging	Het

Other mutations in Dcp1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01296:Dcp1b	APN	6	119,192,319 (GRCm39)	missense	probably damaging	0.96
IGL01320:Dcp1b	APN	6	119,192,036 (GRCm39)	missense	probably benign	0.29
IGL01348:Dcp1b	APN	6	119,160,679 (GRCm39)	missense	probably damaging	1.00
IGL01635:Dcp1b	APN	6	119,183,498 (GRCm39)	missense	probably damaging	1.00
IGL02888:Dcp1b	APN	6	119,197,048 (GRCm39)	utr 3 prime	probably benign
IGL03280:Dcp1b	APN	6	119,157,019 (GRCm39)	intron	probably benign
R1672:Dcp1b	UTSW	6	119,194,872 (GRCm39)	missense	probably benign
R2395:Dcp1b	UTSW	6	119,192,025 (GRCm39)	missense	probably benign
R2421:Dcp1b	UTSW	6	119,192,227 (GRCm39)	missense	probably benign	0.28
R2512:Dcp1b	UTSW	6	119,183,473 (GRCm39)	missense	possibly damaging	0.69
R2870:Dcp1b	UTSW	6	119,191,735 (GRCm39)	missense	probably benign
R2870:Dcp1b	UTSW	6	119,191,735 (GRCm39)	missense	probably benign
R4450:Dcp1b	UTSW	6	119,183,437 (GRCm39)	missense	probably benign	0.01
R5394:Dcp1b	UTSW	6	119,152,328 (GRCm39)	missense	probably damaging	1.00
R5688:Dcp1b	UTSW	6	119,194,872 (GRCm39)	missense	probably benign
R7734:Dcp1b	UTSW	6	119,192,244 (GRCm39)	missense	probably benign	0.00
R7847:Dcp1b	UTSW	6	119,192,256 (GRCm39)	missense	probably benign
R8274:Dcp1b	UTSW	6	119,160,612 (GRCm39)	missense	probably damaging	1.00
R8325:Dcp1b	UTSW	6	119,192,397 (GRCm39)	nonsense	probably null
R9424:Dcp1b	UTSW	6	119,196,993 (GRCm39)	nonsense	probably null
R9576:Dcp1b	UTSW	6	119,196,993 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TGAGCTTCCTGTTGCCAAG -3'
(R):5'- TTCTGATCTCAAAGCCCGTGG -3'

Sequencing Primer
(F):5'- TTGCCAAGGCGACGATC -3'
(R):5'- AGCCGGCCACACCTTCTG -3'

Posted On

2019-11-26