Incidental Mutation 'R7773:Chid1'
ID 598713
Institutional Source Beutler Lab
Gene Symbol Chid1
Ensembl Gene ENSMUSG00000025512
Gene Name chitinase domain containing 1
Synonyms 3110023E09Rik
MMRRC Submission 045829-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.072) question?
Stock # R7773 (G1)
Quality Score 225.009
Status Validated
Chromosome 7
Chromosomal Location 141073049-141119770 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 141109518 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 123 (M123V)
Ref Sequence ENSEMBL: ENSMUSP00000130360 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026586] [ENSMUST00000118694] [ENSMUST00000143561] [ENSMUST00000153191] [ENSMUST00000166082] [ENSMUST00000209452]
AlphaFold Q922Q9
Predicted Effect probably benign
Transcript: ENSMUST00000026586
AA Change: M123V

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
SMART Domains Protein: ENSMUSP00000026586
Gene: ENSMUSG00000025512
AA Change: M123V

DomainStartEndE-ValueType
PDB:3BXW|A 4 240 1e-142 PDB
Blast:Glyco_18 82 302 1e-139 BLAST
SCOP:d1e9la1 84 240 1e-15 SMART
Predicted Effect
SMART Domains Protein: ENSMUSP00000065953
Gene: ENSMUSG00000025512
AA Change: M121V

DomainStartEndE-ValueType
PDB:3BXW|A 3 236 1e-143 PDB
Blast:Glyco_18 81 268 1e-121 BLAST
SCOP:d1e9la1 83 236 2e-16 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000118694
AA Change: M120V

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
SMART Domains Protein: ENSMUSP00000112891
Gene: ENSMUSG00000025512
AA Change: M120V

DomainStartEndE-ValueType
PDB:3BXW|A 1 237 1e-142 PDB
Blast:Glyco_18 79 299 1e-139 BLAST
SCOP:d1e9la1 81 237 1e-15 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000143561
AA Change: M120V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000115174
Gene: ENSMUSG00000025512
AA Change: M120V

DomainStartEndE-ValueType
low complexity region 22 32 N/A INTRINSIC
Pfam:Glyco_hydro_18 79 263 4e-11 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000153191
AA Change: M120V

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000114693
Gene: ENSMUSG00000025512
AA Change: M120V

DomainStartEndE-ValueType
low complexity region 22 32 N/A INTRINSIC
Glyco_18 79 385 3.54e-27 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000166082
AA Change: M123V

PolyPhen 2 Score 0.019 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000130360
Gene: ENSMUSG00000025512
AA Change: M123V

DomainStartEndE-ValueType
low complexity region 25 35 N/A INTRINSIC
Glyco_18 82 388 3.54e-27 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000209452
AA Change: M120V

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.3%
Validation Efficiency 98% (55/56)
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700006A11Rik A G 3: 124,206,180 (GRCm39) I336T probably benign Het
4930519P11Rik T C 2: 154,455,107 (GRCm39) Y84C unknown Het
4930568D16Rik C T 2: 35,244,606 (GRCm39) G249S probably damaging Het
AAdacl4fm3 A T 4: 144,430,047 (GRCm39) L314Q probably damaging Het
Adprhl1 C T 8: 13,298,682 (GRCm39) V83I probably damaging Het
Agbl1 T A 7: 76,348,585 (GRCm39) V894E unknown Het
Amigo3 T C 9: 107,931,867 (GRCm39) L430P probably benign Het
Aoc1 A G 6: 48,883,146 (GRCm39) I341V probably benign Het
Bod1l A G 5: 41,990,055 (GRCm39) S223P probably benign Het
Cacnb3 T C 15: 98,537,819 (GRCm39) probably null Het
Ccdc63 G T 5: 122,247,335 (GRCm39) N503K probably damaging Het
Ccdc83 T A 7: 89,879,120 (GRCm39) I225F probably damaging Het
Cd200r1 A G 16: 44,610,050 (GRCm39) T90A possibly damaging Het
Cd8a A G 6: 71,350,799 (GRCm39) N88S probably benign Het
Cep170 A G 1: 176,567,642 (GRCm39) V152A Het
Cnnm4 T C 1: 36,538,603 (GRCm39) V595A probably benign Het
Coro7 A G 16: 4,449,870 (GRCm39) L630P probably damaging Het
Cpvl A G 6: 53,908,890 (GRCm39) probably null Het
Edem3 A T 1: 151,687,347 (GRCm39) K762* probably null Het
Elp6 T A 9: 110,141,627 (GRCm39) probably null Het
Emilin3 A T 2: 160,752,718 (GRCm39) Y77* probably null Het
Fam234b T A 6: 135,220,912 (GRCm39) I641N probably benign Het
Farsa T C 8: 85,590,781 (GRCm39) probably null Het
Foxf2 T C 13: 31,811,182 (GRCm39) S374P probably benign Het
Gm11596 A T 11: 99,683,667 (GRCm39) I151N unknown Het
Gm9817 C T 13: 45,232,427 (GRCm39) Q77* probably null Het
Gon4l A G 3: 88,803,102 (GRCm39) K1238E probably benign Het
H13 A G 2: 152,537,431 (GRCm39) Y292C probably damaging Het
Hip1r A G 5: 124,139,504 (GRCm39) N928S probably benign Het
Iqcf4 T C 9: 106,445,812 (GRCm39) N112D probably benign Het
Jak3 A C 8: 72,131,686 (GRCm39) T125P probably benign Het
Krt7 A C 15: 101,311,913 (GRCm39) K124Q possibly damaging Het
Ldc1 T C 4: 130,114,169 (GRCm39) N83D probably damaging Het
Lrrc66 G A 5: 73,764,664 (GRCm39) S793F probably damaging Het
Mycbp2 C T 14: 103,485,840 (GRCm39) V1074I probably damaging Het
Nckap5 T C 1: 125,954,581 (GRCm39) D657G probably benign Het
Nt5el A G 13: 105,218,793 (GRCm39) I42M probably damaging Het
Or5b113 T A 19: 13,342,598 (GRCm39) V202E probably benign Het
Or8k21 T C 2: 86,145,034 (GRCm39) I199V probably benign Het
Osbpl7 A G 11: 96,941,548 (GRCm39) S24G probably benign Het
Pcm1 G T 8: 41,762,610 (GRCm39) E1385* probably null Het
Poc5 A G 13: 96,547,143 (GRCm39) T469A probably damaging Het
Ppp3ca A G 3: 136,596,222 (GRCm39) T296A probably benign Het
Prl6a1 T C 13: 27,502,125 (GRCm39) I164T probably damaging Het
Psmd6 GCAGAGCGGGCAGGGCATCTCACTGACCCTGTCACCTACCCAGAGCGGGCAGGGCATCTCACTGACCCTGTCACCTACCCAGAGCGGGCAGGGCATCTCACTGACC GCAGAGCGGGCAGGGCATCTCACTGACCCTGTCACCTACCCAGAGCGGGCAGGGCATCTCACTGACC 14: 14,119,882 (GRCm38) probably null Het
Rnf149 A C 1: 39,604,299 (GRCm39) M188R possibly damaging Het
Rpl10l T C 12: 66,331,041 (GRCm39) I31V probably benign Het
Serinc5 T C 13: 92,797,592 (GRCm39) S32P probably damaging Het
Sirt1 T A 10: 63,162,562 (GRCm39) K137M possibly damaging Het
Smc4 A G 3: 68,923,496 (GRCm39) Y251C probably damaging Het
Sod3 A C 5: 52,525,643 (GRCm39) E114A possibly damaging Het
Tgfbr3 A G 5: 107,288,368 (GRCm39) V431A probably benign Het
Tlr4 T C 4: 66,757,836 (GRCm39) S210P probably damaging Het
Trub2 G T 2: 29,676,520 (GRCm39) T70N probably benign Het
Tsga10 A T 1: 37,874,323 (GRCm39) C159S unknown Het
Vmn1r15 A T 6: 57,235,644 (GRCm39) I171F probably benign Het
Vmn2r50 T A 7: 9,771,562 (GRCm39) H713L possibly damaging Het
Zcchc14 T C 8: 122,378,514 (GRCm39) S43G unknown Het
Zfp638 T C 6: 83,956,196 (GRCm39) I1601T probably damaging Het
Other mutations in Chid1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00425:Chid1 APN 7 141,102,609 (GRCm39) missense probably damaging 1.00
IGL01095:Chid1 APN 7 141,110,142 (GRCm39) missense probably damaging 1.00
IGL01382:Chid1 APN 7 141,110,166 (GRCm39) missense probably damaging 1.00
IGL01505:Chid1 APN 7 141,093,807 (GRCm39) splice site probably null
IGL02108:Chid1 APN 7 141,112,841 (GRCm39) start codon destroyed probably null 0.98
IGL02216:Chid1 APN 7 141,076,506 (GRCm39) splice site probably benign
IGL02574:Chid1 APN 7 141,076,603 (GRCm39) splice site probably benign
R0006:Chid1 UTSW 7 141,076,339 (GRCm39) splice site probably benign
R0006:Chid1 UTSW 7 141,076,339 (GRCm39) splice site probably benign
R0711:Chid1 UTSW 7 141,076,590 (GRCm39) missense probably benign
R1518:Chid1 UTSW 7 141,108,384 (GRCm39) missense probably damaging 0.98
R1836:Chid1 UTSW 7 141,106,409 (GRCm39) splice site probably null
R5026:Chid1 UTSW 7 141,093,749 (GRCm39) missense probably damaging 0.99
R5516:Chid1 UTSW 7 141,076,059 (GRCm39) missense probably damaging 1.00
R5811:Chid1 UTSW 7 141,110,166 (GRCm39) missense probably damaging 1.00
R6009:Chid1 UTSW 7 141,109,493 (GRCm39) missense probably damaging 1.00
R6182:Chid1 UTSW 7 141,108,415 (GRCm39) missense probably benign 0.08
R6238:Chid1 UTSW 7 141,076,049 (GRCm39) missense probably benign 0.03
R6966:Chid1 UTSW 7 141,076,297 (GRCm39) missense possibly damaging 0.89
R7106:Chid1 UTSW 7 141,102,573 (GRCm39) missense probably benign 0.01
R7278:Chid1 UTSW 7 141,109,401 (GRCm39) splice site probably null
R8714:Chid1 UTSW 7 141,093,678 (GRCm39) nonsense probably null
R9169:Chid1 UTSW 7 141,093,722 (GRCm39) missense probably damaging 1.00
R9536:Chid1 UTSW 7 141,093,755 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- ACATTCACACTGCTACTCATTAGTC -3'
(R):5'- CATGTCCAGAGCATCAGGTGAC -3'

Sequencing Primer
(F):5'- TAATACACAACCTGGCTAGCTGTGG -3'
(R):5'- AGCATCAGGTGACAGCATC -3'
Posted On 2019-11-26