Mutagenetix > Incidental Mutation

Incidental Mutation 'R9090:Mcoln1'

690900

Institutional Source

Beutler Lab

Gene Symbol

Mcoln1

Ensembl Gene

ENSMUSG00000004567

Gene Name

mucolipin 1

Synonyms

TRPML1, mucolipidin, 2210015I05Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.199) question?

Stock #

R9090 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

3500457-3515232 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 3505771 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 22 (Y22C)

Ref Sequence

ENSEMBL: ENSMUSP00000004683 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004683] [ENSMUST00000160338] [ENSMUST00000208306]

AlphaFold

Q99J21

Predicted Effect

probably damaging
Transcript: ENSMUST00000004683
AA Change: Y22C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000004683
Gene: ENSMUSG00000004567
AA Change: Y22C

Domain	Start	End	E-Value	Type
low complexity region	30	39	N/A	INTRINSIC
transmembrane domain	70	92	N/A	INTRINSIC
transmembrane domain	299	321	N/A	INTRINSIC
transmembrane domain	348	370	N/A	INTRINSIC
Pfam:PKD_channel	378	524	2.1e-12	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000160338
AA Change: Y22C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123717
Gene: ENSMUSG00000004567
AA Change: Y22C

Domain	Start	End	E-Value	Type
low complexity region	30	39	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000208306
AA Change: Y22C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a memberof the transient receptor potential (TRP) cation channel gene family. The transmembrane protein localizes to intracellular vesicular membranes including lysosomes, and functions in the late endocytic pathway and in the regulation of lysosomal exocytosis. The channel is permeable to Ca(2+), Fe(2+), Na(+), K(+), and H(+), and is modulated by changes in Ca(2+) concentration. Mutations in this gene result in mucolipidosis type IV. [provided by RefSeq, Oct 2009]
PHENOTYPE: Mice homozygous for a null allele exhibit premature death around 8 months of age preceeded by weight loss, weakness, lethargy, bladder and stomach distension, and retinal degradation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 106 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aatk	A	T	11: 120,011,114 (GRCm38)	S819T	probably damaging	Het
Abca13	A	T	11: 9,291,698 (GRCm38)	D1187V	probably damaging	Het
AF366264	T	C	8: 13,836,697 (GRCm38)	T465A	possibly damaging	Het
Ak9	C	A	10: 41,424,627 (GRCm38)	T1611K	unknown	Het
Als2	G	T	1: 59,203,030 (GRCm38)	T622K	probably benign	Het
Ankrd40	G	A	11: 94,334,436 (GRCm38)	A98T	probably benign	Het
Ap1b1	T	C	11: 5,023,174 (GRCm38)	L339P	probably damaging	Het
Appl1	A	C	14: 26,947,127 (GRCm38)	H363Q	probably benign	Het
Atf6	T	C	1: 170,794,676 (GRCm38)	N459D	probably damaging	Het
Ccdc129	G	T	6: 55,967,066 (GRCm38)	R417L	probably benign	Het
Ccdc6	A	T	10: 70,189,163 (GRCm38)	Q432L	unknown	Het
Ccl21a	T	A	4: 42,773,486 (GRCm38)	Q84L	probably damaging	Het
Cct4	A	G	11: 23,001,389 (GRCm38)	I348V	probably benign	Het
Cd300ld2	A	G	11: 115,013,724 (GRCm38)	Y106H	probably damaging	Het
Cdh19	C	T	1: 110,949,217 (GRCm38)	E131K	probably damaging	Het
Cdon	A	G	9: 35,491,879 (GRCm38)	D1095G	probably damaging	Het
Cep85l	T	A	10: 53,281,574 (GRCm38)	R678*	probably null	Het
Chst3	T	A	10: 60,185,643 (GRCm38)	S461C	probably damaging	Het
Clk1	A	G	1: 58,420,153 (GRCm38)	I149T	possibly damaging	Het
Clvs2	T	A	10: 33,513,305 (GRCm38)	D313V	possibly damaging	Het
Dap3	T	C	3: 88,933,606 (GRCm38)	T75A	probably benign	Het
Dnaaf1	T	A	8: 119,597,653 (GRCm38)	F631L	probably benign	Het
Dnah14	A	T	1: 181,769,760 (GRCm38)	N3549I	probably benign	Het
Dnah17	A	T	11: 118,041,044 (GRCm38)	Y3701N	probably damaging	Het
Dock6	A	G	9: 21,841,500 (GRCm38)	V339A	possibly damaging	Het
Dpp6	T	A	5: 27,598,834 (GRCm38)	C259*	probably null	Het
Dqx1	A	G	6: 83,059,043 (GRCm38)	T119A	probably benign	Het
Dync1h1	G	T	12: 110,616,876 (GRCm38)	R469L	probably benign	Het
Eno4	C	T	19: 58,962,828 (GRCm38)	A424V	probably benign	Het
Fads1	T	A	19: 10,185,798 (GRCm38)	D146E	probably damaging	Het
Fam171a1	C	T	2: 3,223,506 (GRCm38)	T303M	probably damaging	Het
Fam189a2	A	T	19: 23,994,857 (GRCm38)	I161N	possibly damaging	Het
Fam71a	A	G	1: 191,162,956 (GRCm38)	S497P	probably damaging	Het
Fbxw20	C	T	9: 109,221,355 (GRCm38)	D401N	probably benign	Het
Fcho1	T	A	8: 71,710,424 (GRCm38)	T654S	possibly damaging	Het
Flad1	C	A	3: 89,408,551 (GRCm38)	E235*	probably null	Het
Flrt2	G	T	12: 95,779,133 (GRCm38)	A82S	probably benign	Het
Gabrg3	A	T	7: 57,179,638 (GRCm38)	S124T	probably benign	Het
Galt	C	T	4: 41,756,777 (GRCm38)	T139I	probably benign	Het
Gfod1	T	C	13: 43,303,385 (GRCm38)	E38G	possibly damaging	Het
Gm10330	A	G	12: 23,779,991 (GRCm38)	I63T	possibly damaging	Het
Gm15448	T	A	7: 3,816,998 (GRCm38)	E640V	unknown	Het
Gm49359	A	G	13: 62,455,053 (GRCm38)	V111A	probably benign	Het
Gpank1	C	T	17: 35,121,758 (GRCm38)		probably benign	Het
Hck	T	C	2: 153,131,265 (GRCm38)	L156P	probably damaging	Het
Hcn3	G	T	3: 89,149,960 (GRCm38)	R444S	probably damaging	Het
Hephl1	T	C	9: 15,076,940 (GRCm38)	N624S	probably damaging	Het
Hmcn1	A	G	1: 150,756,558 (GRCm38)	I876T	probably damaging	Het
Ifi207	CTGTTGATGAAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATACAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATAGAGTTGCATATGGAGCCAGGAGGATGCTATATGTTGTTGATGAAGTTGCATGTGGAGCCAGGAG	CTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGTTGTTGATAGAGTTGCATGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATACAGTTGCTTGTGGAGCCAGGAGGTTGCTAGATGCTGTTGATAGAGTTGCATATGGAGCCAGGAGGATGCTATATGTTGTTGATGAAGTTGCATGTGGAGCCAGGAG	1: 173,729,196 (GRCm38)		probably benign	Het
Itga9	T	A	9: 118,671,791 (GRCm38)	D377E	possibly damaging	Het
Itpr3	G	A	17: 27,118,677 (GRCm38)		probably benign	Het
Klk11	C	T	7: 43,776,530 (GRCm38)	L32F	probably benign	Het
Lta4h	A	G	10: 93,474,550 (GRCm38)	S427G	probably benign	Het
Lxn	T	A	3: 67,461,318 (GRCm38)	I122F	probably damaging	Het
Lyz1	A	G	10: 117,288,587 (GRCm38)	V148A	possibly damaging	Het
Mael	G	T	1: 166,204,855 (GRCm38)	Q326K	probably benign	Het
Magi3	T	C	3: 104,015,948 (GRCm38)	D1151G	possibly damaging	Het
Map3k9	C	A	12: 81,722,487 (GRCm38)	G929V	probably benign	Het
Mier3	G	T	13: 111,691,336 (GRCm38)	M45I	probably benign	Het
Mrpl1	T	C	5: 96,223,887 (GRCm38)	V91A	probably damaging	Het
Myo7a	T	C	7: 98,091,074 (GRCm38)	H571R	probably benign	Het
Myom1	T	A	17: 71,067,330 (GRCm38)	W601R	probably damaging	Het
Myom3	C	T	4: 135,778,168 (GRCm38)	T456I	probably benign	Het
Nags	A	T	11: 102,146,758 (GRCm38)	H225L	probably benign	Het
Ncaph	C	A	2: 127,116,634 (GRCm38)	K488N	probably damaging	Het
Nkain3	C	T	4: 20,484,897 (GRCm38)	R60H	probably damaging	Het
Nlrp9a	A	T	7: 26,562,519 (GRCm38)	M698L	probably benign	Het
Nmur2	A	C	11: 56,040,482 (GRCm38)	I134M	probably benign	Het
Nrp2	A	C	1: 62,745,511 (GRCm38)	E273A	probably benign	Het
Nup85	A	G	11: 115,577,961 (GRCm38)	D210G	possibly damaging	Het
Obscn	A	G	11: 59,115,817 (GRCm38)	F1173S	probably damaging	Het
Olfr206	A	T	16: 59,344,782 (GRCm38)	C306*	probably null	Het
Otogl	T	A	10: 107,817,113 (GRCm38)	E1126V	probably null	Het
Pfkl	T	C	10: 77,997,592 (GRCm38)	I259V	probably benign	Het
Phkg1	A	T	5: 129,865,022 (GRCm38)	Y291N	probably benign	Het
Piezo2	C	A	18: 63,075,719 (GRCm38)	V1408L	probably damaging	Het
Piezo2	T	G	18: 63,030,379 (GRCm38)	H2156P	probably damaging	Het
Plekhg3	A	G	12: 76,575,920 (GRCm38)	T646A	probably benign	Het
Plk5	C	G	10: 80,357,996 (GRCm38)	R40G	probably damaging	Het
Ppp1r12a	T	C	10: 108,262,363 (GRCm38)	S838P	probably damaging	Het
Rarb	A	T	14: 16,435,235 (GRCm38)	Y270*	probably null	Het
Rbm15	T	C	3: 107,331,996 (GRCm38)	E362G	possibly damaging	Het
Rcan1	A	G	16: 92,465,853 (GRCm38)	F76L		Het
Rdh19	T	C	10: 127,860,273 (GRCm38)	L298P	probably damaging	Het
Rims1	T	A	1: 22,428,522 (GRCm38)	H57L		Het
Rlf	T	C	4: 121,147,554 (GRCm38)	T1520A	probably benign	Het
Rnase1	T	A	14: 51,145,507 (GRCm38)	H130L	possibly damaging	Het
Samd8	T	A	14: 21,792,501 (GRCm38)	M360K	probably damaging	Het
Samhd1	A	G	2: 157,114,285 (GRCm38)	L329P	probably damaging	Het
Scube1	C	T	15: 83,610,193 (GRCm38)	E878K	probably damaging	Het
Sema3b	T	C	9: 107,598,955 (GRCm38)	Y689C	probably damaging	Het
Sh3pxd2b	A	T	11: 32,423,361 (GRCm38)	N843Y	possibly damaging	Het
Slco1a6	C	T	6: 142,089,849 (GRCm38)	C583Y	probably damaging	Het
Smg1	A	C	7: 118,212,563 (GRCm38)	V88G	unknown	Het
Spata24	T	A	18: 35,657,001 (GRCm38)	N146Y	probably damaging	Het
Tcf3	C	A	10: 80,417,357 (GRCm38)	V258L	probably benign	Het
Tiam2	T	C	17: 3,414,736 (GRCm38)	Y247H	probably damaging	Het
Ticrr	T	C	7: 79,660,856 (GRCm38)	F173L	possibly damaging	Het
Tpp2	A	G	1: 43,954,651 (GRCm38)	E232G	probably damaging	Het
Trank1	T	A	9: 111,345,479 (GRCm38)	V138E	probably damaging	Het
Ttll3	T	C	6: 113,392,635 (GRCm38)	S47P	probably benign	Het
Utp4	C	T	8: 106,906,225 (GRCm38)	T280M	probably damaging	Het
Vmn1r123	A	T	7: 21,162,869 (GRCm38)	N229Y	probably benign	Het
Vmn1r85	A	T	7: 13,085,015 (GRCm38)	Y67*	probably null	Het
Zbtb12	T	A	17: 34,895,344 (GRCm38)	V35E	possibly damaging	Het
Zmym6	T	A	4: 127,124,061 (GRCm38)	F1212I	probably damaging	Het

Other mutations in Mcoln1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01362:Mcoln1	APN	8	3,507,558 (GRCm38)	missense	possibly damaging	0.89
IGL01621:Mcoln1	APN	8	3,510,910 (GRCm38)	missense	probably damaging	1.00
IGL02147:Mcoln1	APN	8	3,508,379 (GRCm38)	missense	probably benign
IGL02156:Mcoln1	APN	8	3,512,657 (GRCm38)	nonsense	probably null
R0616:Mcoln1	UTSW	8	3,515,025 (GRCm38)	missense	probably benign	0.00
R1498:Mcoln1	UTSW	8	3,512,861 (GRCm38)	missense	probably damaging	1.00
R2102:Mcoln1	UTSW	8	3,511,731 (GRCm38)	missense	probably damaging	1.00
R2155:Mcoln1	UTSW	8	3,511,787 (GRCm38)	missense	probably damaging	1.00
R2178:Mcoln1	UTSW	8	3,508,766 (GRCm38)	missense	probably damaging	1.00
R2218:Mcoln1	UTSW	8	3,505,813 (GRCm38)	missense	possibly damaging	0.50
R3828:Mcoln1	UTSW	8	3,500,601 (GRCm38)	missense	possibly damaging	0.93
R3875:Mcoln1	UTSW	8	3,508,355 (GRCm38)	missense	probably benign
R3971:Mcoln1	UTSW	8	3,507,408 (GRCm38)	missense	probably benign	0.01
R4621:Mcoln1	UTSW	8	3,505,923 (GRCm38)	missense	probably damaging	1.00
R4622:Mcoln1	UTSW	8	3,505,923 (GRCm38)	missense	probably damaging	1.00
R4659:Mcoln1	UTSW	8	3,510,840 (GRCm38)	missense	probably damaging	1.00
R4873:Mcoln1	UTSW	8	3,507,422 (GRCm38)	missense	probably benign	0.00
R4875:Mcoln1	UTSW	8	3,507,422 (GRCm38)	missense	probably benign	0.00
R4914:Mcoln1	UTSW	8	3,507,483 (GRCm38)	nonsense	probably null
R5114:Mcoln1	UTSW	8	3,510,697 (GRCm38)	unclassified	probably benign
R5586:Mcoln1	UTSW	8	3,510,389 (GRCm38)	missense	probably damaging	1.00
R5876:Mcoln1	UTSW	8	3,510,910 (GRCm38)	missense	probably damaging	1.00
R5946:Mcoln1	UTSW	8	3,508,701 (GRCm38)	missense	probably damaging	1.00
R6520:Mcoln1	UTSW	8	3,505,855 (GRCm38)	missense	probably damaging	1.00
R7449:Mcoln1	UTSW	8	3,507,285 (GRCm38)	missense	probably damaging	0.98
R7712:Mcoln1	UTSW	8	3,505,873 (GRCm38)	missense	probably damaging	0.99
R7904:Mcoln1	UTSW	8	3,508,356 (GRCm38)	missense	probably benign
R7936:Mcoln1	UTSW	8	3,505,924 (GRCm38)	missense	probably damaging	1.00
R8058:Mcoln1	UTSW	8	3,508,378 (GRCm38)	missense	probably benign
R8082:Mcoln1	UTSW	8	3,507,420 (GRCm38)	missense	probably benign	0.01
R8093:Mcoln1	UTSW	8	3,508,740 (GRCm38)	missense	possibly damaging	0.95
R9271:Mcoln1	UTSW	8	3,505,771 (GRCm38)	missense	probably damaging	1.00
R9689:Mcoln1	UTSW	8	3,507,436 (GRCm38)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CTCCTTTCTCCCCAAGACAGA -3'
(R):5'- GCACAGTGACCACCAAGATCT -3'

Sequencing Primer
(F):5'- GCTGGAATTTCAGATGTGCACCAC -3'
(R):5'- GATCTTGACCACCTGCAGC -3'

Posted On

2021-12-30