Mutagenetix > Incidental Mutation

Incidental Mutation 'R9620:Nlrc5'

724718

Institutional Source

Beutler Lab

Gene Symbol

Nlrc5

Ensembl Gene

ENSMUSG00000074151

Gene Name

NLR family, CARD domain containing 5

Synonyms

AI451557

MMRRC Submission

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R9620 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

94434356-94527272 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 94476406 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 378 (Y378F)

Ref Sequence

ENSEMBL: ENSMUSP00000138322 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053085] [ENSMUST00000182409] [ENSMUST00000211816]

AlphaFold

C3VPR6

PDB Structure

The solution NMR structure of the NLRC5 caspase recruitment domain (CARD) [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000053085
AA Change: Y378F

PolyPhen 2 Score 0.440 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000138322
Gene: ENSMUSG00000074151
AA Change: Y378F

Domain	Start	End	E-Value	Type
low complexity region	136	151	N/A	INTRINSIC
Pfam:NACHT	223	386	1.8e-32	PFAM
LRR	716	743	6.89e1	SMART
LRR	744	771	9.86e1	SMART
LRR	772	796	1.22e2	SMART
LRR	844	870	2.16e2	SMART
LRR	871	898	1.76e-1	SMART
LRR	1006	1033	1.9e0	SMART
LRR	1034	1061	4.51e1	SMART
low complexity region	1141	1169	N/A	INTRINSIC
LRR	1240	1267	2.67e1	SMART
LRR	1273	1295	1.22e1	SMART
low complexity region	1341	1351	N/A	INTRINSIC
LRR	1519	1546	5.48e1	SMART
LRR	1547	1574	3.36e1	SMART
LRR	1575	1602	1.69e1	SMART
LRR	1603	1630	8.99e-1	SMART
LRR	1631	1654	5.26e0	SMART
LRR	1659	1686	2.81e0	SMART
LRR	1687	1714	1.6e-4	SMART
LRR	1715	1742	1.06e0	SMART
LRR	1743	1768	8e0	SMART
LRR	1793	1820	2.06e1	SMART
LRR	1821	1848	5.42e-2	SMART
LRR	1849	1876	3.54e0	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000182409
AA Change: Y378F

PolyPhen 2 Score 0.646 (Sensitivity: 0.87; Specificity: 0.91)

Predicted Effect

probably benign
Transcript: ENSMUST00000211816
AA Change: Y378F

PolyPhen 2 Score 0.440 (Sensitivity: 0.89; Specificity: 0.90)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the caspase recruitment domain-containing NLR family. This gene plays a role in cytokine response and antiviral immunity through its inhibition of NF-kappa-B activation and negative regulation of type I interferon signaling pathways. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal cytokine production induced by virus and bacteria infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630095E13Rik	A	G	9: 36,637,202		probably null	Het
Abhd3	G	T	18: 10,704,605	T151K	possibly damaging	Het
Acsf2	C	T	11: 94,572,586	W130*	probably null	Het
Aldh16a1	G	A	7: 45,147,989	R132*	probably null	Het
Amer3	C	T	1: 34,588,962	P761S	probably benign	Het
Amotl1	G	T	9: 14,548,673	D886E	probably damaging	Het
Cacna1s	T	C	1: 136,108,171	F1383S	probably damaging	Het
Casc4	T	C	2: 121,906,761	V261A	probably benign	Het
Col14a1	T	A	15: 55,362,385	V148E	unknown	Het
Col9a2	T	A	4: 121,053,206		probably null	Het
Cyp2a5	T	A	7: 26,837,211	M205K	possibly damaging	Het
Dcst2	A	T	3: 89,370,518	Q466L	possibly damaging	Het
Ecel1	T	C	1: 87,153,131	I350V	possibly damaging	Het
Enthd1	G	A	15: 80,452,700	T511I	probably benign	Het
Exoc6b	T	A	6: 85,011,320	K92*	probably null	Het
Fam181a	T	G	12: 103,316,332	Y165*	probably null	Het
Fam205c	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG	4: 42,871,823		probably benign	Het
Fam71d	A	C	12: 78,715,303	D247A	probably damaging	Het
Fbxo34	A	G	14: 47,531,268	Y746C	probably damaging	Het
Fgfr4	T	A	13: 55,161,181	S372T	possibly damaging	Het
Fmo1	A	G	1: 162,833,821	F298L	probably benign	Het
Gad1	A	C	2: 70,574,276	D170A	possibly damaging	Het
Golgb1	T	C	16: 36,919,449	S2758P	probably benign	Het
H2afv	A	T	11: 6,429,094		probably null	Het
Ilkap	A	G	1: 91,376,251	C163R		Het
Krt9	A	T	11: 100,188,360	D735E	unknown	Het
Lipo3	A	T	19: 33,582,229	C80*	probably null	Het
Lpcat3	C	T	6: 124,703,580	P478L	probably damaging	Het
Luc7l3	G	A	11: 94,321,719	R24C	unknown	Het
Mafa	T	A	15: 75,747,312	H204L	probably benign	Het
Mapk10	A	C	5: 102,966,607	V305G	probably damaging	Het
Mgat1	T	C	11: 49,261,295	F202L	probably benign	Het
Micalcl	A	T	7: 112,381,196	T126S	probably benign	Het
Mill1	G	A	7: 18,263,102	R206H	probably benign	Het
Nlrp9a	G	T	7: 26,551,044	R78L	probably damaging	Het
Olfr1358	G	T	10: 78,520,294	A229S	probably benign	Het
Olfr150	A	T	9: 39,736,991	M59L		Het
Olfr556	A	T	7: 102,670,804	I295F	possibly damaging	Het
Orc6	A	T	8: 85,299,801		probably benign	Het
Pcdhgb5	C	T	18: 37,731,433	Q94*	probably null	Het
Pcnx	A	G	12: 81,950,186	D952G	probably damaging	Het
Ppfia2	A	T	10: 106,913,658	H1135L		Het
Prmt2	A	T	10: 76,225,379	I91N	probably damaging	Het
Ptprm	A	G	17: 66,809,489	Y932H	probably damaging	Het
Qrich2	T	C	11: 116,447,120	K154R	probably damaging	Het
Rapgef4	A	G	2: 72,205,707	T515A	probably benign	Het
Rgmb	G	A	17: 15,821,017	R103*	probably null	Het
Ripk1	T	G	13: 34,026,823	S334A	possibly damaging	Het
Rnf5	C	T	17: 34,601,747	G147S	possibly damaging	Het
Ryr1	T	C	7: 29,015,713	Y4662C	unknown	Het
Secisbp2l	A	G	2: 125,747,474	M718T	probably damaging	Het
Slc16a6	T	C	11: 109,463,496	T100A	probably benign	Het
Slc27a6	T	A	18: 58,609,815	M525K	probably damaging	Het
Slco2a1	G	C	9: 103,084,866	C579S	probably damaging	Het
Snx14	A	G	9: 88,381,741	S864P	probably damaging	Het
Sptbn2	T	C	19: 4,750,507	L2250P	probably damaging	Het
Tlr6	A	T	5: 64,954,803	S254T	possibly damaging	Het
Trap1	A	T	16: 4,040,219	Y675*	probably null	Het
Ttc9b	C	A	7: 27,654,087	A54E	probably damaging	Het
Unc45a	A	C	7: 80,325,655	Y934D	probably damaging	Het
Usp17ld	A	G	7: 103,250,972	L251P	possibly damaging	Het
Usp42	A	G	5: 143,717,399	V489A	probably damaging	Het
Vars	A	G	17: 35,016,025	T1277A	unknown	Het
Vmn2r117	A	G	17: 23,478,476	S81P	probably damaging	Het
Vmn2r69	T	A	7: 85,412,296	I157F	probably benign	Het
Zfp697	A	G	3: 98,427,866	S316G	probably damaging	Het
Zfp729b	T	A	13: 67,591,668	H826L	probably damaging	Het

Other mutations in Nlrc5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00158:Nlrc5	APN	8	94502211	splice site	probably benign
IGL00232:Nlrc5	APN	8	94484623	critical splice donor site	probably null
IGL00324:Nlrc5	APN	8	94521479	missense	probably damaging	1.00
IGL02715:Nlrc5	APN	8	94474668	missense	probably damaging	1.00
IGL02992:Nlrc5	APN	8	94506573	missense	possibly damaging	0.69
IGL03095:Nlrc5	APN	8	94521908	splice site	probably benign
IGL03389:Nlrc5	APN	8	94521474	missense	probably damaging	1.00
IGL03406:Nlrc5	APN	8	94476855	missense	probably benign	0.01
cassis	UTSW	8	94476393	nonsense	probably null
cowberry	UTSW	8	94491525	missense	possibly damaging	0.83
lingon	UTSW	8	94481860	missense	probably damaging	1.00
R0037:Nlrc5	UTSW	8	94489535	missense	probably benign	0.00
R0048:Nlrc5	UTSW	8	94474656	missense	possibly damaging	0.81
R0092:Nlrc5	UTSW	8	94489594	splice site	probably benign
R0506:Nlrc5	UTSW	8	94493125	splice site	probably benign
R0548:Nlrc5	UTSW	8	94521783	missense	probably null	0.09
R2014:Nlrc5	UTSW	8	94525510	splice site	probably benign
R3051:Nlrc5	UTSW	8	94476715	missense	probably benign	0.01
R3776:Nlrc5	UTSW	8	94472839	missense	possibly damaging	0.48
R3837:Nlrc5	UTSW	8	94511301	splice site	probably benign
R4012:Nlrc5	UTSW	8	94475992	missense	possibly damaging	0.92
R4367:Nlrc5	UTSW	8	94476564	missense	probably damaging	1.00
R4400:Nlrc5	UTSW	8	94494353	missense	probably benign	0.08
R4469:Nlrc5	UTSW	8	94520839	missense	probably damaging	1.00
R4561:Nlrc5	UTSW	8	94477146	missense	probably damaging	1.00
R4584:Nlrc5	UTSW	8	94477275	missense	probably damaging	0.96
R4758:Nlrc5	UTSW	8	94512328	missense	possibly damaging	0.70
R4834:Nlrc5	UTSW	8	94505485	missense	probably benign	0.00
R4896:Nlrc5	UTSW	8	94521216	unclassified	probably benign
R5004:Nlrc5	UTSW	8	94521216	unclassified	probably benign
R5018:Nlrc5	UTSW	8	94525452	missense	probably damaging	1.00
R5115:Nlrc5	UTSW	8	94476819	missense	possibly damaging	0.67
R5116:Nlrc5	UTSW	8	94481860	missense	probably damaging	1.00
R5126:Nlrc5	UTSW	8	94474671	missense	possibly damaging	0.95
R5148:Nlrc5	UTSW	8	94476693	missense	probably damaging	1.00
R5224:Nlrc5	UTSW	8	94494316	missense	probably benign	0.26
R5527:Nlrc5	UTSW	8	94490416	missense	probably damaging	1.00
R5640:Nlrc5	UTSW	8	94475793	missense	probably benign	0.02
R5705:Nlrc5	UTSW	8	94475757	missense	probably benign	0.00
R5778:Nlrc5	UTSW	8	94479526	missense	possibly damaging	0.66
R5830:Nlrc5	UTSW	8	94472914	missense	probably damaging	1.00
R5850:Nlrc5	UTSW	8	94521047	missense	probably benign	0.00
R5978:Nlrc5	UTSW	8	94488593	missense	probably damaging	0.98
R6335:Nlrc5	UTSW	8	94502274	missense	probably benign	0.01
R6372:Nlrc5	UTSW	8	94479750	missense	probably damaging	0.98
R6486:Nlrc5	UTSW	8	94521299	splice site	probably null
R6765:Nlrc5	UTSW	8	94490368	missense	probably benign	0.20
R6861:Nlrc5	UTSW	8	94521229	unclassified	probably benign
R6869:Nlrc5	UTSW	8	94521955	missense	probably benign	0.00
R7134:Nlrc5	UTSW	8	94479722	missense	probably damaging	0.99
R7204:Nlrc5	UTSW	8	94491525	missense	possibly damaging	0.83
R7231:Nlrc5	UTSW	8	94521805	critical splice donor site	probably null
R7309:Nlrc5	UTSW	8	94474042	missense	probably benign	0.01
R7368:Nlrc5	UTSW	8	94476393	nonsense	probably null
R7497:Nlrc5	UTSW	8	94521970	missense	probably damaging	1.00
R7606:Nlrc5	UTSW	8	94477117	missense	possibly damaging	0.67
R7611:Nlrc5	UTSW	8	94512648	critical splice donor site	probably null
R7685:Nlrc5	UTSW	8	94521400	splice site	probably null
R7810:Nlrc5	UTSW	8	94505144	missense	possibly damaging	0.85
R7829:Nlrc5	UTSW	8	94521769	missense	probably damaging	1.00
R7910:Nlrc5	UTSW	8	94493092	missense	probably benign	0.00
R7921:Nlrc5	UTSW	8	94487664	missense	probably damaging	1.00
R8131:Nlrc5	UTSW	8	94481792	missense	probably damaging	1.00
R8237:Nlrc5	UTSW	8	94526125	missense	unknown
R8493:Nlrc5	UTSW	8	94523220	missense	probably damaging	1.00
R8888:Nlrc5	UTSW	8	94525490	missense	probably benign	0.04
R8964:Nlrc5	UTSW	8	94505488	missense	possibly damaging	0.54
R9053:Nlrc5	UTSW	8	94490385	missense	probably benign	0.00
R9058:Nlrc5	UTSW	8	94512310	missense	possibly damaging	0.86
R9161:Nlrc5	UTSW	8	94486646	missense	probably damaging	0.97
R9278:Nlrc5	UTSW	8	94511280	missense	probably benign	0.00
R9285:Nlrc5	UTSW	8	94472976	missense	probably damaging	1.00
R9405:Nlrc5	UTSW	8	94473024	missense	probably damaging	0.98
R9591:Nlrc5	UTSW	8	94522681	missense	probably damaging	1.00
RF021:Nlrc5	UTSW	8	94476888	missense	probably benign	0.16
Z1088:Nlrc5	UTSW	8	94504464	missense	possibly damaging	0.48
Z1177:Nlrc5	UTSW	8	94506580	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TGAGGCTCTCCATGCTGATTC -3'
(R):5'- CTGCAGGTACAACTGGGTTATG -3'

Sequencing Primer
(F):5'- CTGTGGGTACTGACAATGCAG -3'
(R):5'- ACAACTGGGTTATGGTGGGCAG -3'

Posted On

2022-09-12