Mutagenetix > Incidental Mutation

Incidental Mutation 'R1928:Grik1'

215107

Institutional Source

Beutler Lab

Gene Symbol

Grik1

Ensembl Gene

ENSMUSG00000022935

Gene Name

glutamate receptor, ionotropic, kainate 1

Synonyms

Glur-5, GluK5, A830007B11Rik, Glurbeta1, D16Ium24, D16Ium24e, Glur5

MMRRC Submission

039946-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1928 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

87692788-88087153 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 87848241 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 176 (V176M)

Ref Sequence

ENSEMBL: ENSMUSP00000153786 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023652] [ENSMUST00000072256] [ENSMUST00000114137] [ENSMUST00000211444] [ENSMUST00000227986] [ENSMUST00000228188] [ENSMUST00000228034]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000023652
AA Change: V176M

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000023652
Gene: ENSMUSG00000022935
AA Change: V176M

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	14	357	4.7e-69	PFAM
Pfam:Peripla_BP_6	48	347	5.1e-11	PFAM
PBPe	394	762	2.4e-130	SMART
Lig_chan-Glu_bd	404	468	6.34e-31	SMART
Blast:PBPe	770	815	2e-16	BLAST
low complexity region	829	850	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000072256
AA Change: V176M

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000072107
Gene: ENSMUSG00000022935
AA Change: V176M

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	14	357	2.6e-72	PFAM
Pfam:Peripla_BP_6	49	347	3.4e-10	PFAM
PBPe	394	762	2.4e-130	SMART
Lig_chan-Glu_bd	404	468	6.34e-31	SMART
Blast:PBPe	770	817	1e-17	BLAST
low complexity region	858	879	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000114137
AA Change: V105M

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000109773
Gene: ENSMUSG00000022935
AA Change: V105M

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	1	325	5.4e-63	PFAM
Pfam:Peripla_BP_6	18	315	5.1e-11	PFAM
PBPe	362	730	2.4e-130	SMART
Lig_chan-Glu_bd	372	436	6.34e-31	SMART
Blast:PBPe	738	783	2e-16	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000210910

Predicted Effect

probably damaging
Transcript: ENSMUST00000211444
AA Change: V176M

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000211635

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226447

Predicted Effect

probably damaging
Transcript: ENSMUST00000227986
AA Change: V176M

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

Predicted Effect

probably damaging
Transcript: ENSMUST00000228188
AA Change: V176M

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

Predicted Effect

probably damaging
Transcript: ENSMUST00000228034
AA Change: V176M

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

Meta Mutation Damage Score

0.2023

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.6%

Validation Efficiency

98% (120/123)

MGI Phenotype

FUNCTION: Glutamate receptors are the predominant excitatory neurotransmitter receptors in the mammalian brain and are activated in a variety of normal neurophysiologic processes. This gene product belongs to the kainate family of glutamate receptors, which are composed of four subunits and function as ligand-activated ion channels. The subunit encoded by this gene is subject to RNA editing (CAG->CGG; Q->R) within the second transmembrane domain, which is thought to alter the properties of ion flow. Alternative splicing, resulting in transcript variants encoding different isoforms, has been noted for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for disruptions in this gene display subtile abnormalities in the electrophysiology of neurons in the brain. Response to chemical pain stimuli is also reduced. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 117 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630073D07Rik	T	G	6: 132,603,564 (GRCm39)	Q64P	unknown	Het
Adgrv1	A	T	13: 81,668,905 (GRCm39)	F1830L	probably benign	Het
Anks3	C	T	16: 4,763,918 (GRCm39)		probably null	Het
Aqp12	G	A	1: 92,934,332 (GRCm39)	D70N	probably damaging	Het
B4galnt4	C	T	7: 140,648,061 (GRCm39)	R526*	probably null	Het
Best2	A	G	8: 85,737,882 (GRCm39)	F171S	probably benign	Het
C2cd5	A	T	6: 142,958,956 (GRCm39)	V965D	probably damaging	Het
Cd33	T	C	7: 43,179,303 (GRCm39)	E282G	probably benign	Het
Cep95	C	T	11: 106,681,554 (GRCm39)		probably benign	Het
Chd6	A	T	2: 160,809,920 (GRCm39)		probably benign	Het
Clec4d	A	T	6: 123,244,120 (GRCm39)		probably null	Het
Cntd1	C	T	11: 101,174,678 (GRCm39)	S128L	probably damaging	Het
Col19a1	T	C	1: 24,490,835 (GRCm39)		probably benign	Het
Ctrb1	C	A	8: 112,415,324 (GRCm39)	V117L	probably benign	Het
Dclk1	T	C	3: 55,154,942 (GRCm39)	V124A	possibly damaging	Het
Dcp2	T	C	18: 44,538,638 (GRCm39)		probably null	Het
Dctn1	C	A	6: 83,176,166 (GRCm39)		probably benign	Het
Dennd11	A	G	6: 40,388,648 (GRCm39)	F238L	probably benign	Het
Ephb3	T	A	16: 21,041,045 (GRCm39)	M701K	possibly damaging	Het
Ero1b	A	G	13: 12,616,648 (GRCm39)	E359G	probably damaging	Het
Exosc8	G	T	3: 54,636,266 (GRCm39)	A255E	probably damaging	Het
Fhip1a	G	A	3: 85,595,838 (GRCm39)	P349L	probably damaging	Het
Fndc3c1	C	T	X: 105,477,128 (GRCm39)	A824T	probably benign	Het
Gja10	G	A	4: 32,601,812 (GRCm39)	Q191*	probably null	Het
Gm1587	C	T	14: 78,036,288 (GRCm39)	R6Q	unknown	Het
Gm3409	A	G	5: 146,476,418 (GRCm39)	I190V	probably benign	Het
Gm4952	G	T	19: 12,600,973 (GRCm39)	M64I	probably damaging	Het
Gramd1b	C	T	9: 40,217,765 (GRCm39)	M595I	possibly damaging	Het
Grin2b	A	G	6: 136,021,044 (GRCm39)	C86R	probably damaging	Het
Gtse1	C	T	15: 85,746,264 (GRCm39)		probably benign	Het
Hectd2	T	C	19: 36,589,719 (GRCm39)	Y615H	probably damaging	Het
Hydin	T	C	8: 111,229,579 (GRCm39)	F1552S	possibly damaging	Het
Ifi207	A	G	1: 173,557,211 (GRCm39)	V516A	possibly damaging	Het
Igfbp5	G	T	1: 72,913,184 (GRCm39)	P39T	probably damaging	Het
Il23r	T	A	6: 67,400,719 (GRCm39)	D537V	possibly damaging	Het
Invs	A	G	4: 48,390,095 (GRCm39)	Y251C	probably damaging	Het
Isl1	G	T	13: 116,444,953 (GRCm39)	H25Q	probably damaging	Het
Kif13a	A	G	13: 46,966,221 (GRCm39)	L399P	probably damaging	Het
Klhl1	A	G	14: 96,584,225 (GRCm39)	V335A	probably benign	Het
Klhl14	C	A	18: 21,784,843 (GRCm39)	A195S	probably damaging	Het
Lepr	A	G	4: 101,639,927 (GRCm39)		probably benign	Het
Map1b	A	C	13: 99,567,454 (GRCm39)	S1756A	unknown	Het
Med23	C	T	10: 24,785,710 (GRCm39)	A877V	probably benign	Het
Mfsd4b2	T	C	10: 39,797,458 (GRCm39)	Y299C	probably damaging	Het
Mipol1	T	A	12: 57,379,205 (GRCm39)	M221K	probably damaging	Het
Muc4	A	T	16: 32,569,350 (GRCm39)	S137C	probably damaging	Het
Mutyh	T	C	4: 116,673,855 (GRCm39)	Y189H	probably damaging	Het
Nabp2	T	C	10: 128,245,182 (GRCm39)	T21A	possibly damaging	Het
Nalf1	T	C	8: 9,820,217 (GRCm39)	T268A	probably benign	Het
Nell1	T	A	7: 50,350,943 (GRCm39)	V530E	possibly damaging	Het
Npc1	G	C	18: 12,346,435 (GRCm39)	P254A	possibly damaging	Het
Nup153	A	G	13: 46,854,502 (GRCm39)	V530A	probably damaging	Het
Nxpe2	T	C	9: 48,237,914 (GRCm39)	T114A	probably damaging	Het
Or10j5	T	C	1: 172,784,881 (GRCm39)	V173A	probably damaging	Het
Or11h4b	A	G	14: 50,918,872 (GRCm39)	V73A	probably benign	Het
Or7e177	T	C	9: 20,212,354 (GRCm39)	V287A	probably benign	Het
Pabpc1l	T	A	2: 163,874,174 (GRCm39)	I193N	possibly damaging	Het
Pabpc4l	A	G	3: 46,401,066 (GRCm39)	Y193H	probably damaging	Het
Pank1	T	C	19: 34,856,281 (GRCm39)	S66G	probably benign	Het
Pcdhb1	A	T	18: 37,399,233 (GRCm39)	K395*	probably null	Het
Pcna	A	G	2: 132,093,817 (GRCm39)		probably benign	Het
Pgr	T	A	9: 8,903,630 (GRCm39)	Y550*	probably null	Het
Phf11a	A	G	14: 59,519,316 (GRCm39)		probably benign	Het
Pkhd1	A	T	1: 20,151,524 (GRCm39)		probably benign	Het
Pofut2	T	A	10: 77,096,642 (GRCm39)	Y122*	probably null	Het
Pole	A	G	5: 110,475,644 (GRCm39)	M1818V	probably benign	Het
Rapgef3	A	G	15: 97,647,914 (GRCm39)	L696P	probably damaging	Het
Rasal3	T	C	17: 32,616,327 (GRCm39)	D310G	probably damaging	Het
Rhoq	A	G	17: 87,302,486 (GRCm39)	K141E	probably benign	Het
Rilpl1	A	G	5: 124,652,813 (GRCm39)		probably benign	Het
Rnaseh1	T	C	12: 28,703,088 (GRCm39)	S91P	probably benign	Het
Rsf1	G	GACGGCGGCT	7: 97,229,116 (GRCm39)		probably benign	Het
Saa1	C	A	7: 46,391,856 (GRCm39)	G31W	probably null	Het
Saxo5	T	A	8: 3,536,947 (GRCm39)	I431K	possibly damaging	Het
Scaf8	A	G	17: 3,218,352 (GRCm39)	T241A	unknown	Het
Scarb2	C	T	5: 92,592,125 (GRCm39)	A473T	possibly damaging	Het
Scnn1b	T	C	7: 121,509,670 (GRCm39)	F273S	probably damaging	Het
Sdccag8	T	C	1: 176,656,536 (GRCm39)	V136A	probably damaging	Het
Sdr16c6	A	T	4: 4,069,926 (GRCm39)	V138E	probably damaging	Het
Sf3a3	G	A	4: 124,615,886 (GRCm39)	A180T	possibly damaging	Het
Slc16a5	T	A	11: 115,360,842 (GRCm39)	S342T	probably damaging	Het
Slc18a1	A	G	8: 69,526,464 (GRCm39)	S75P	probably benign	Het
Slc7a6	T	A	8: 106,920,120 (GRCm39)		probably benign	Het
Smco3	G	A	6: 136,808,845 (GRCm39)	Q10*	probably null	Het
Spem2	T	C	11: 69,708,290 (GRCm39)	Q225R	probably benign	Het
Ssb	G	T	2: 69,697,901 (GRCm39)		probably null	Het
Stx8	T	C	11: 68,000,106 (GRCm39)	I182T	probably damaging	Het
Synj2	T	A	17: 6,040,542 (GRCm39)	I121N	probably damaging	Het
Tbc1d1	T	C	5: 64,502,643 (GRCm39)	Y1055H	probably damaging	Het
Thbs3	G	T	3: 89,125,067 (GRCm39)	R52L	probably damaging	Het
Tmem101	C	T	11: 102,044,222 (GRCm39)	V222I	probably benign	Het
Tnks2	C	T	19: 36,823,068 (GRCm39)	Q112*	probably null	Het
Tnrc6b	T	A	15: 80,764,924 (GRCm39)	W809R	probably damaging	Het
Trib2	T	A	12: 15,865,454 (GRCm39)	R16S	probably damaging	Het
Trim12a	T	C	7: 103,956,331 (GRCm39)	N70D	probably damaging	Het
Trim55	T	A	3: 19,716,046 (GRCm39)		probably null	Het
Tspyl5	T	A	15: 33,687,153 (GRCm39)	D264V	probably damaging	Het
Ttn	A	G	2: 76,555,388 (GRCm39)	V30539A	probably damaging	Het
Tubgcp3	A	G	8: 12,713,988 (GRCm39)	F43S	possibly damaging	Het
Tut7	A	G	13: 59,964,548 (GRCm39)	L209P	probably damaging	Het
Ube3d	A	G	9: 86,305,056 (GRCm39)	L262P	probably damaging	Het
Ugt1a7c	T	C	1: 88,023,651 (GRCm39)	V270A	probably benign	Het
Vav3	T	A	3: 109,413,738 (GRCm39)	F225L	possibly damaging	Het
Vmn1r21	G	T	6: 57,821,077 (GRCm39)	Y122*	probably null	Het
Vmn1r225	C	A	17: 20,723,071 (GRCm39)	Q171K	probably benign	Het
Vmn2r103	T	C	17: 20,032,029 (GRCm39)	V601A	possibly damaging	Het
Vmn2r19	T	A	6: 123,308,589 (GRCm39)	N555K	probably damaging	Het
Vps33a	G	A	5: 123,696,684 (GRCm39)	A323V	probably benign	Het
Wdr77	C	T	3: 105,874,618 (GRCm39)	P337S	probably benign	Het
Wnk1	A	T	6: 119,929,884 (GRCm39)	I93N	probably damaging	Het
Zbtb9	T	A	17: 27,193,612 (GRCm39)	I339N	probably damaging	Het
Zfp202	T	A	9: 40,121,083 (GRCm39)	D241E	probably damaging	Het
Zfp235	T	A	7: 23,840,563 (GRCm39)	Y327*	probably null	Het
Zfp820	A	C	17: 22,038,316 (GRCm39)	D337E	probably benign	Het
Zfp944	T	C	17: 22,560,065 (GRCm39)	T14A	probably damaging	Het
Zfy1	A	G	Y: 729,733 (GRCm39)	V303A	unknown	Het
Zfyve26	C	T	12: 79,286,744 (GRCm39)	W2281*	probably null	Het

Other mutations in Grik1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01143:Grik1	APN	16	87,754,488 (GRCm39)	splice site	probably null
IGL01347:Grik1	APN	16	87,754,481 (GRCm39)	missense	probably benign	0.00
IGL01612:Grik1	APN	16	87,743,623 (GRCm39)	missense	probably damaging	1.00
IGL02010:Grik1	APN	16	87,848,396 (GRCm39)	missense	possibly damaging	0.96
IGL02059:Grik1	APN	16	87,852,937 (GRCm39)	missense	possibly damaging	0.95
IGL02068:Grik1	APN	16	87,737,539 (GRCm39)	missense	possibly damaging	0.80
IGL02200:Grik1	APN	16	87,737,453 (GRCm39)	missense	probably damaging	1.00
IGL02206:Grik1	APN	16	87,732,808 (GRCm39)	missense	probably damaging	1.00
IGL02375:Grik1	APN	16	87,743,444 (GRCm39)	missense	probably damaging	1.00
IGL02598:Grik1	APN	16	87,744,872 (GRCm39)	missense	probably damaging	1.00
IGL02686:Grik1	APN	16	87,806,649 (GRCm39)	splice site	probably null
IGL02890:Grik1	APN	16	87,693,690 (GRCm39)	intron	probably benign
R0096:Grik1	UTSW	16	87,831,114 (GRCm39)	missense	possibly damaging	0.55
R0096:Grik1	UTSW	16	87,831,114 (GRCm39)	missense	possibly damaging	0.55
R0387:Grik1	UTSW	16	87,831,238 (GRCm39)	splice site	probably benign
R0613:Grik1	UTSW	16	87,848,221 (GRCm39)	critical splice donor site	probably null
R1087:Grik1	UTSW	16	87,803,265 (GRCm39)	missense	probably benign	0.00
R1694:Grik1	UTSW	16	87,746,956 (GRCm39)	missense	probably damaging	0.96
R1905:Grik1	UTSW	16	87,693,754 (GRCm39)	nonsense	probably null
R2157:Grik1	UTSW	16	87,853,012 (GRCm39)	missense	probably damaging	1.00
R3122:Grik1	UTSW	16	87,803,361 (GRCm39)	missense	probably damaging	1.00
R3906:Grik1	UTSW	16	87,803,337 (GRCm39)	missense	probably benign	0.00
R4194:Grik1	UTSW	16	87,743,616 (GRCm39)	missense	probably benign	0.45
R4343:Grik1	UTSW	16	87,693,140 (GRCm39)	missense	probably benign	0.00
R4349:Grik1	UTSW	16	87,754,431 (GRCm39)	missense	probably damaging	1.00
R4416:Grik1	UTSW	16	87,848,349 (GRCm39)	missense	probably benign	0.00
R4423:Grik1	UTSW	16	87,720,088 (GRCm39)	missense	probably benign	0.10
R4660:Grik1	UTSW	16	87,720,019 (GRCm39)	missense	probably damaging	1.00
R4804:Grik1	UTSW	16	87,754,457 (GRCm39)	missense	probably damaging	0.99
R5052:Grik1	UTSW	16	87,746,986 (GRCm39)	missense	probably benign	0.01
R5126:Grik1	UTSW	16	87,744,747 (GRCm39)	missense	probably damaging	1.00
R5334:Grik1	UTSW	16	87,720,082 (GRCm39)	frame shift	probably null
R5335:Grik1	UTSW	16	87,720,082 (GRCm39)	frame shift	probably null
R5337:Grik1	UTSW	16	87,720,082 (GRCm39)	frame shift	probably null
R5479:Grik1	UTSW	16	87,732,914 (GRCm39)	missense	probably damaging	1.00
R6141:Grik1	UTSW	16	87,693,760 (GRCm39)	missense	probably benign	0.00
R6188:Grik1	UTSW	16	87,852,959 (GRCm39)	missense	probably benign	0.06
R6335:Grik1	UTSW	16	87,744,794 (GRCm39)	missense	probably damaging	1.00
R6610:Grik1	UTSW	16	87,831,200 (GRCm39)	missense	probably damaging	1.00
R6737:Grik1	UTSW	16	87,848,279 (GRCm39)	missense	probably damaging	1.00
R7275:Grik1	UTSW	16	87,709,708 (GRCm39)	missense	probably benign	0.06
R7876:Grik1	UTSW	16	87,720,121 (GRCm39)	missense
R8021:Grik1	UTSW	16	87,711,110 (GRCm39)	missense
R8027:Grik1	UTSW	16	87,732,893 (GRCm39)	missense
R8096:Grik1	UTSW	16	87,803,355 (GRCm39)	missense
R8266:Grik1	UTSW	16	87,744,867 (GRCm39)	missense	probably benign
R8515:Grik1	UTSW	16	87,720,170 (GRCm39)	nonsense	probably null
R8922:Grik1	UTSW	16	87,693,167 (GRCm39)	missense	unknown
R9097:Grik1	UTSW	16	87,732,796 (GRCm39)	missense
R9125:Grik1	UTSW	16	87,852,956 (GRCm39)	missense
R9273:Grik1	UTSW	16	87,848,379 (GRCm39)	missense
R9286:Grik1	UTSW	16	87,848,315 (GRCm39)	missense
R9491:Grik1	UTSW	16	87,746,995 (GRCm39)	missense
RF016:Grik1	UTSW	16	87,831,074 (GRCm39)	missense
RF022:Grik1	UTSW	16	87,693,225 (GRCm39)	missense
X0018:Grik1	UTSW	16	87,743,484 (GRCm39)	missense	probably damaging	1.00
Z1177:Grik1	UTSW	16	87,743,572 (GRCm39)	missense

Predicted Primers

PCR Primer
(F):5'- GGGCTGGCAAATGGAGAAATTT -3'
(R):5'- TGCTGTACAGTCTATTTGCAATG -3'

Sequencing Primer
(F):5'- GATGAGGGTCTTAAAGTCCATACCC -3'
(R):5'- GCAATGCTCTGGAAGTTCCAC -3'

Posted On

2014-07-14